Novel delivery systems for controlled release of bacterial therapeutics.

As more is learned about the benefits of microbes, their potential to prevent and treat disease is expanding. Microbial therapeutics are less burdensome and costly to produce than traditional molecular drugs, often with superior efficacy. Yet, as with most medicines, controlled dosing and delivery to the area of need remain key challenges for microbes. Advances in materials to control small-molecule delivery are expected to translate to microbes, enabling similar control with equivalent benefits. In this perspective, recent advances in living biotherapeutics are discussed within the context of new methods for their controlled release. The integration of these advances provides a roadmap for the design, synthesis, and analysis of controlled microbial therapeutic delivery systems.

Alkyl-templated cocrystallization of long-chain 1-bromoalkanes by lipid-like ionic liquids.

The serendipitous discovery of an unorthodox ionic cocrystallization system using 2-mercaptothiazolium-based ionic liquids as a crystallization milieu paves the way for the first report of crystal structures of long-chain 1-bromoalkanes. We used single crystal X-ray diffraction to determine the structures of 1-bromo-hexadecane and 1-octadecane with the aid of ionic liquids with alkyl side chains of equivalent length to the bromoalkane at room temperature. Long alkyl chains in combination with σ-hole interactions from strategically placed sulfur motifs synergistically function to crystallize the 1-bromoalkanes.

Anticancer Agents as Design Archetypes: Insights into the Structure-Property Relationships of Ionic Liquids with a Triarylmethyl Moiety.

A fundamental challenge underlying the design principles of ionic liquids (ILs) entails a lack of understanding into how tailored properties arise from the molecular framework of the constituent ions. Herein, we present detailed analyses of novel functional ILs containing a triarylmethyl (trityl) motif. Combining an empirically driven molecular design, thermophysical analysis, X-ray crystallography, and computational modeling, we achieved an in-depth understanding of structure-property relationships, establishing a coherent correlation with distinct trends between the thermophysical properties and functional diversity of the compound library. We observe a coherent relationship between melting (T m) and glass transition (T g) temperatures and the location and type of chemical modification of the cation. Furthermore, there is an inverse correlation between the simulated dipole moment and the T m/T g of the salts. Specifically, chlorination of the ILs both reduces and reorients the dipole moment, a key property controlling intermolecular interactions, thus allowing for control over T m/T g values. The observed trends are particularly apparent when comparing the phase transitions and dipole moments, allowing for the development of predictive models. Ultimately, trends in structural features and characterized properties align with established studies in physicochemical relationships for ILs, underpinning the formation and stability of these new lipophilic, low-melting salts.

Bioinspired translation of classical music intode novoprotein structures using deep learning and molecular modeling.

Architected biomaterials, as well as sound and music, are constructed from small building blocks that are assembled across time- and length-scales. Here we present a novel deep learning-enabled integrated algorithmic workflow to merge the two concepts for radical discovery ofde novoprotein materials, exploiting musical creativity as the foundation, and extrapolating through a recursive method to increase protein complexity by successively injecting protein chemistry into the process. Indeed, music is one of the few universal expressions that can create bridges between cultures, find associations between seemingly unrelated concepts, and can be used as a novel way to generate bio-inspired designs that derive functions from the imaginations of the creative mind. Earlier work has offered a pathway to convert proteins into sound, and sound into proteins. Here we build on this paradigm and translate a piece of classical music into matter. Based on Bach's Goldberg variations, we offer a series of case studies to convert the musical data imagined by the composer into protein design, and folded into a 3D structure using deep learning. The quest we seek to address is to identify semblances, or memories, or information content in such musical creation, that offers new insights into pattern relationships between distinct manifestations of information. Using basic local alignment search tool analysis, we find that several fragments of the new proteins display similarities to existing protein sequences found in proteobacteria among other organisms, especially in regions of low complexity and repetitive motifs. The resulting protein forms the basis for iterative musical composition, and an evolutionary paradigm that defines a variational pathway for melodic development, complementing conventional creative or mathematical methods. This paper broadens the concept of what is understood as bio-inspiration to include a broad array of systems created by humans, animals, or other natural mechanisms.

Covalently linked hydrogen bond donors: The other side of molecular frustration in deep eutectic solvents.

In this work, we investigated the effects of a single covalent link between hydrogen bond donor species on the behavior of deep eutectic solvents (DESs) and shed light on the resulting interactions at molecular scale that influence the overall physical nature of the DES system. We have compared sugar-based DES mixtures, 1:2 choline chloride/glucose [DES(g)] and 1:1 choline chloride/trehalose [DES(t)]. Trehalose is a disaccharide composed of two glucose units that are connected by an α-1,4-glycosidic bond, thus making it an ideal candidate for comparison with glucose containing DES(g). The differential scanning calorimetric analysis of these chemically close DES systems revealed significant difference in their phase transition behavior. The DES(g) exhibited a glass transition temperature of -58 °C and behaved like a fluid at higher temperatures, whereas DES(t) exhibited marginal phase change behavior at -11 °C and no change in the phase behavior at higher temperatures. The simulations revealed that the presence of the glycosidic bond between sugar units in DES(t) hindered free movement of sugar units in trehalose, thus reducing the number of interactions with choline chloride compared to free glucose molecules in DES(g). This was further confirmed using quantum theory of atoms in molecule analysis that involved determination of bond critical points (BCPs) using Laplacian of electron density. The analysis revealed a significantly higher number of BCPs between choline chloride and sugar in DES(g) compared to DES(t). The DES(g) exhibited a higher amount of charge transfer between the choline cation and sugar, and better interaction energy and enthalpy of formation compared to DES(t). This is a result of the ability of free glucose molecules to completely surround choline chloride in DES(g) and form a higher number of interactions. The entropy of formation for DES(t) was slightly higher than that for DES(g), which is a result of fewer interactions between trehalose and choline chloride. In summary, the presence of the glycosidic bond between the sugar units in trehalose limited their movement, thus resulting in fewer interactions with choline chloride. This limited movement in turn diminishes the ability of the hydrogen bond donor to disrupt the molecular packing within the lattice structure of the hydrogen bond acceptor (and vice versa), a crucial factor that lowers the melting point of DES mixtures. This inability to move due to the presence of the glycosidic bond in trehalose significantly influences the physical state of the DES(t) system, making it behave like a semi-solid material, whereas DES(g) behaves like a liquid material at room temperature.

Design Principles of Lipid-like Ionic Liquids for Gene Delivery.

We developed lipid-like ionic liquids, containing 2-mercaptoimidazolium and 2-mercaptothiazolinium headgroups tethered to two long saturated alkyl chains, as carriers for in vitro delivery of plasmid HEK DNA into 293T cells. We employed a combination of modular design, synthesis, X-ray analysis, and computational modeling to rationalize the self-assembly and desired physicochemical and biological properties. The results suggest that thioamide-derived ionic liquids may serve as a modular platform for lipid-mediated gene delivery. This work represents a step toward understanding the structure-function relationships of these amphiphiles with long-range ordering and offering insight into design principles for synthetic vectors based on self-assembly behavior.

Quinine di-hydro-chloride hemihydrate.

Numerous non-covalent inter-actions link together discrete mol-ecules in the crystal structure of the title compound, 2C20H26N2O2 2+·4Cl-·H2O {systematic name: 4-[(5-ethenyl-1-azonia-bicyclo-[2.2.2]octan-2-yl)(hy-droxy)meth-yl]-6-meth-oxy-quinolin-1-ium dichloride hemihydrate}. A combination of hydrogen bonding between acidic H atoms and the anions in the asymmetric unit forms a portion of the observed hydrogen-bonded network. π-π inter-actions between the aromatic portions of the cation appear to play a role in the formation of the long-range ordering. One ethyl-ene double bond was found to be disordered. The disorder extends to the neighboring carbon and hydrogen atoms.