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1.
J Comput Chem ; 42(23): 1632-1642, 2021 Sep 05.
Article in English | MEDLINE | ID: mdl-34117796

ABSTRACT

We present CHAMPION (Chalmers hierarchical atomic, molecular, polymeric, and ionic analysis toolkit): a software developed to automatically detect time-dependent bonds between atoms based on their dynamics, classify the local graph topology around them, and analyze the physicochemical properties of these topologies by statistical physics. In stark contrast to methodologies where bonds are detected based on static conditions such as cut-off distances, CHAMPION considers pairs of atoms to be bound only if they move together and act as a bound pair over time. Furthermore, the time-dependent global bond graph is possible to split into dynamically shifting connected components or subgraphs around a certain chemical motif and thereby allow the physicochemical properties of each such topology to be analyzed by statistical physics. Applicable to condensed matter and liquids in general, and electrolytes in particular, this allows both quantitative and qualitative descriptions of local structure, as well as dynamical processes such as speciation and diffusion. We present here a detailed overview of CHAMPION, including its underlying methodology, implementation, and capabilities.

2.
Eur J Appl Physiol ; 120(5): 961-968, 2020 May.
Article in English | MEDLINE | ID: mdl-32236753

ABSTRACT

PURPOSE: To investigate the gross efficiency (GE) and delta efficiency (DE) during cycling and running in elite triathletes. METHODS: Five male and five female elite triathletes completed two incremental treadmill tests with an inclination of 2.5° to determine their GE and DE during cycling and running. The speed increments between the 5-min stages were 2.4 and 0.6 km h-1 during the cycling and running tests, respectively. For each test, GE was calculated as the ratio between the mechanical work rate (MWR) and the metabolic rate (MR) at an intensity corresponding to a net increase in blood-lactate concentration of 1 mmol l-1. DE was calculated by dividing the delta increase in MWR by the delta increase in MR for each test. Pearson correlations and paired-sample t tests were used to investigate the relationships and differences, respectively. RESULTS: There was a correlation between GEcycle and GErun (r = 0.66; P = 0.038; R2 = 0.44), but the correlation between DEcycle and DErun was not statistically significant (r = - 0.045; P = 0.90; R2 = 0.0020). There were differences between GEcycle and GErun (t = 80.8; P < 0.001) as well as between DEcycle and DErun (t = 27.8; P < 0.001). CONCLUSIONS: Elite triathletes with high GE during running also have high GE during cycling, when exercising at a treadmill inclination of 2.5°. For a moderate uphill incline, elite triathletes are more energy efficient during cycling than during running, independent of work rate.


Subject(s)
Athletic Performance/physiology , Bicycling/physiology , Lactic Acid/blood , Oxygen Consumption , Physical Endurance/physiology , Running , Swimming/physiology , Adult , Energy Metabolism , Exercise Test/methods , Female , Healthy Volunteers , Humans , Male
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