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1.
FEBS J ; 275(23): 5885-98, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19021764

ABSTRACT

Small heat shock proteins (sHsps) are intracellular molecular chaperones that prevent the aggregation and precipitation of partially folded and destabilized proteins. sHsps comprise an evolutionarily conserved region of 80-100 amino acids, denoted the alpha-crystallin domain, which is flanked by regions of variable sequence and length: the N-terminal domain and the C-terminal extension. Although the two domains are known to be involved in the organization of the quaternary structure of sHsps and interaction with their target proteins, the role of the C-terminal extension is enigmatic. Despite the lack of sequence similarity, the C-terminal extension of mammalian sHsps is typically a short, polar segment which is unstructured and highly flexible and protrudes from the oligomeric structure. Both the polarity and flexibility of the C-terminal extension are important for the maintenance of sHsp solubility and for complexation with its target protein. In this study, mutants of murine Hsp25 were prepared in which the glutamic acid residues in the C-terminal extension at positions 190, 199 and 204 were each replaced with alanine. The mutants were found to be structurally altered and functionally impaired. Although there were no significant differences in the environment of tryptophan residues in the N-terminal domain or in the overall secondary structure, an increase in exposed hydrophobicity was observed for the mutants compared with wild-type Hsp25. The average molecular masses of the E199A and E204A mutants were comparable with that of the wild-type protein, whereas the E190A mutant was marginally smaller. All mutants displayed markedly reduced thermostability and chaperone activity compared with the wild-type. It is concluded that each of the glutamic acid residues in the C-terminal extension is important for Hsp25 to act as an effective molecular chaperone.


Subject(s)
Glutamic Acid/chemistry , Heat-Shock Proteins/chemistry , Neoplasm Proteins/chemistry , Amino Acid Substitution , Amino Acids/analysis , Anilino Naphthalenesulfonates/chemistry , Animals , Chromatography, Gel , Circular Dichroism , Dithiothreitol/chemistry , Heat-Shock Proteins/biosynthesis , Heat-Shock Proteins/genetics , Hot Temperature , Humans , Hydrophobic and Hydrophilic Interactions , Insulin/chemistry , Mice , Molecular Chaperones , Molecular Weight , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Oxidation-Reduction , Protein Denaturation , Protein Stability , Protein Structure, Secondary , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Sequence Analysis, Protein , Spectrometry, Fluorescence , Tryptophan/chemistry
2.
Biochim Biophys Acta ; 1596(1): 6-15, 2002 Apr 01.
Article in English | MEDLINE | ID: mdl-11983416

ABSTRACT

Recent results indicate that covalent modification of proteins by tryptophan-derived UV filters may explain the age-dependent coloration of human lenses, and play a role in age-related cataract. The sites of attachment of the UV filters to the lens crystallins, however, have not been determined. This study utilized a database of predicted masses of UV filter-modified tryptic peptides to target sites of UV filter attachment. Proteins were isolated from old normal lenses and digested with trypsin at pH 6, in order to preserve the integrity of the sites of modification. Peptides were separated by high-performance liquid chromatography and characterized by mass spectrometry. Major colored and fluorescent peaks in the digest were found to correspond to cysteine-containing peptides in which the sulfur atom of the sidechain was linked to the major UV filter compound, 3-hydroxykynurenine glucoside. Three of the peptides originated from gammaS-crystallin and one from betaB1-crystallin. These results show that a predicted mass database can be used to facilitate the identification of sites of UV filter modification in human lens crystallins. Furthermore, this work represents the first evidence that UV filters bind to specific residues on lens proteins in vivo, and suggests that sulfhydryl groups may be important sites for the attachment of UV filters.


Subject(s)
Eye Proteins/chemistry , Lens, Crystalline/chemistry , Aged , Binding Sites , Chromatography, High Pressure Liquid , Humans , Male , Mass Spectrometry/methods , Peptide Fragments/chemistry , Trypsin , Ultraviolet Rays
3.
FEBS Lett ; 509(1): 6-10, 2001 Nov 30.
Article in English | MEDLINE | ID: mdl-11734196

ABSTRACT

A new UV filter compound, 4-(2-amino-3-hydroxyphenyl)-4-oxobutanoic acid O-diglucoside, has been identified in human lenses. The structure suggests that it is a further metabolic product of the second most abundant UV filter compound, 4-(2-amino-3-hydroxyphenyl)-4-oxobutanoic acid O-glucoside. Quantification studies on the new compound show that it decreases towards zero in both the nucleus and cortex as a function of age. The discovery of this novel disaccharide completes the identification of the major UV filter compounds present in the human lens.


Subject(s)
Glucosides/biosynthesis , Glucosides/chemistry , Glucosides/metabolism , Lens, Crystalline/chemistry , Phenylbutyrates/chemistry , Phenylbutyrates/metabolism , Ultraviolet Rays , Adolescent , Adult , Age Factors , Aged , Aged, 80 and over , Aging , Cell Nucleus/metabolism , Child , Chromatography, High Pressure Liquid , Eye/metabolism , Humans , Linear Models , Mass Spectrometry , Middle Aged , Models, Chemical , Spectrophotometry
4.
Biochem Biophys Res Commun ; 285(5): 1107-13, 2001 Aug 03.
Article in English | MEDLINE | ID: mdl-11478768

ABSTRACT

UV filters, such as kynurenine, are present in the human lens. They are spontaneously unstable at neutral pH and deaminate to form reactive alpha, beta unsaturated ketones. This process becomes more prominent after the lens barrier develops in middle age. Here we show that deaminated kynurenine reacts primarily with histidine residues in alphaB-crystallin: a major lens protein that lacks cysteine. Five of the nine histidines in alphaB-crystallin were found to be conjugated with kynurenine. Furthermore, a major site of covalent modification was at histidine 83, which is found in the putative peptide binding region of alphaB-crystallin; a site crucial for its role as a chaperone. We propose that modification of alphaB-crystallin by UV filters may compromise the chaperone action of this protein.


Subject(s)
Crystallins/chemistry , Kynurenine/chemistry , Aging/metabolism , Animals , Binding Sites/physiology , Cattle , Chromatography, High Pressure Liquid , Crystallins/metabolism , Histidine/chemistry , Hydrogen-Ion Concentration , Kynurenine/metabolism , Mass Spectrometry , Molecular Chaperones , Peptide Fragments/analysis , Peptide Hydrolases/metabolism , Protein Binding/physiology , Sequence Analysis, Protein
5.
Biochemistry ; 39(51): 16176-84, 2000 Dec 26.
Article in English | MEDLINE | ID: mdl-11123946

ABSTRACT

3-Hydroxykynurenine (3OHKyn) is present in the mammalian lens as a UV filter and is formed from kynurenine in the tryptophan metabolic pathway. 3OHKyn is a readily autoxidized o-aminophenol which binds to proteins in vitro. The lens, particularly its central region, the nucleus, becomes increasingly oxidized with age. Under such conditions, the oxidation products of 3OHKyn may bind to lens proteins and contribute to nuclear cataract formation. The purpose of this study was to determine the structures of in vitro reaction products of 3OHKyn with model peptides as a general model for 3OHKyn modification of proteins. 3OHKyn was incubated with the dipeptide glycylglycine (GG) and the tetrapeptide tuftsin (sequence TKPR) under oxidizing conditions, and the reaction products were characterized by a variety of spectroscopic techniques. The major 3OHKyn-GG reaction product involves formation of a benzimidazole moiety between the GG N-terminus and the oxidized amino and/or phenol groups of 3OHKyn. In contrast, tuftsin, which has an N-terminal threonine, forms predominantly a cross-linked dimer with oxidized 3OHKyn. This product is analogous in structure to the dimeric reaction product, quinilinobenzoxamine, formed between oxidized 3OHKyn and glycyllysine [Aquilina, J. A., et al. (1999) Biochemistry 38, 11455-11464], which contains a benzoxazole moiety. The identification of a tuftsin dimer suggests that 3OHKyn can react with any peptide having a free alpha-amino group, via a general side chain elimination mechanism. The identification of both benzimidazole and benzoxazole adducts in peptides with a free N-terminus suggests that peptide amino groups can react initially at either the aromatic amino or hydroxyl group of oxidized 3OHKyn. The proportion of each adduct may change, however, depending on the amino acid sequence at the N-terminus.


Subject(s)
Cross-Linking Reagents/chemistry , Cross-Linking Reagents/metabolism , Kynurenine/analogs & derivatives , Kynurenine/chemistry , Kynurenine/metabolism , Peptides/chemistry , Peptides/metabolism , Chromatography, High Pressure Liquid , Dipeptides/chemistry , Glycine/chemistry , Humans , Kynurenine/isolation & purification , Mass Spectrometry , Nuclear Magnetic Resonance, Biomolecular , Oxidation-Reduction , Spectrometry, Fluorescence , Tuftsin/chemistry
6.
Biochem Biophys Res Commun ; 276(1): 216-23, 2000 Sep 16.
Article in English | MEDLINE | ID: mdl-11006109

ABSTRACT

Tryptophan metabolites, such as kynurenine, are spontaneously unstable at neutral pH. They undergo side-chain deamination yielding reactive alpha, beta unsaturated ketones. In the lens, where these compounds act as UV filters, reaction of the breakdown products with lens proteins (crystallins) may be largely responsible for age-dependent colouration of this tissue. In previous research, where high pH (pH 9) was used to promote deamination and conjugation with lens protein, histidine, lysine, and cysteine residues were found to be modified. In this study we show that, at pH 7, site of reaction with the major lens chaperone alpha-crystallin, is the single cysteine residue of the alphaA subunit. This apparent selectivity has important ramifications because the cysteine-kynurenine adduct is itself unstable under physiological conditions.


Subject(s)
Crystallins/chemistry , Kynurenine/chemistry , Animals , Binding Sites , Cattle , Chromatography, High Pressure Liquid , Crystallins/metabolism , Cysteine , Kynurenine/metabolism , Protein Binding
7.
Biochemistry ; 38(35): 11455-64, 1999 Aug 31.
Article in English | MEDLINE | ID: mdl-10471297

ABSTRACT

3-Hydroxykynurenine, a metabolite of tryptophan, is a powerful antioxidant and neurotoxin. The neurotoxicity results from the oxidation of 3-hydroxykynurenine, and hydroxyl radicals, formed via H(2)O(2), may also be implicated [Okuda, S., Nishiyama, N., Saito, H. , and Katsuki, H. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 12553-12558]. Oxidation of o-aminophenols, such as 3-hydroxykynurenine, also results in the formation of highly reactive quinonimines. Thus, one possible consequence of 3-hydroxykynurenine oxidation may be covalent modification of cellular macromolecules. Such a process could contribute to the neurotoxicity and may potentially be important in other tissues, such as the human lens, where 3-hydroxykynurenine functions as a UV filter. In this work, we demonstrate that 3-hydroxykynurenine can bind to protein amino groups and, further, that under oxidative conditions, 3-hydroxykynurenine can function to cross-link polypeptide chains. The structure of the cross-linked moiety, using the peptide glycyllysine, has been elucidated. The cross-link, which is both colored and fluorescent, involves the peptide alpha-amino groups. Proteins modified by 3-hydroxykynurenine become colored and fluorescent as well as cross-linked. LC-MS studies indicate that the cross-link is also present in gamma-crystallin, following incubation of this lens protein in the presence of 3-hydroxykynurenine. Similar posttranslational modifications of lens proteins accompany cataract formation, and knowledge of the precise mode of reaction of 3-hydroxykynurenine with proteins will assist in determining if 3-hydroxykynurenine is involved in degenerative conditions in which oxidation of such aminophenols is implicated.


Subject(s)
Kynurenine/analogs & derivatives , Peptides/metabolism , Animals , Cattle , Cross-Linking Reagents/chemistry , Cross-Linking Reagents/metabolism , Crystallins/chemistry , Crystallins/metabolism , Dipeptides/chemistry , Dipeptides/metabolism , Electrophoresis, Polyacrylamide Gel , Humans , Kynurenine/chemistry , Kynurenine/metabolism , Mass Spectrometry , Nuclear Magnetic Resonance, Biomolecular , Peptides/chemistry , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet
9.
Exp Eye Res ; 64(5): 727-35, 1997 May.
Article in English | MEDLINE | ID: mdl-9245903

ABSTRACT

3-Hydroxykynurenine (3OHKyn), present as a human lens UV filter, has also been implicated as a carcinogen and neurotoxin. It has been suggested that oxidation of 3OHKyn is involved in each of these effects. In the presence of oxygen, 3OHKyn has been found to react with bovine crystallins, to give brown-coloured products (Stutchbury and Truscott, 1993). In this study the roles of UV-light, pH, glutathione and oxygen were examined, with the objective of determining how these factors may affect the binding of 3OHKyn to crystallins under the conditions found within the lens itself. The presence of oxygen was found to be an important parameter for determining the extent to which 3OHKyn reacts with protein, and when it was totally excluded, little modification was observed. UV-light was not required for activation, but was found to augment the extent of modification and cross-linking, while an elevated pH, which is known to accelerate the rate of 3OHKyn oxidation, did not markedly increase the extent of reaction with the crystallins. 3OHKyn binding was accompanied by crystallin aggregation, pigmentation, and development of non-tryptophan fluorescence, all of which have been associated with cataract formation. The inclusion of glutathione, a ubiquitous antioxidant, in reaction mixtures resulted in a delayed onset of crystallin modification. This effect was apparent at concentrations of glutathione greater than 1 mM. When glutathione levels fell below 1 mM, crystallins became modified by 3OHKyn. Since lens glutathione concentrations decrease with age, and are known to be lower in the lens nucleus than the cortex, this region appears particularly vulnerable to modification by this UV filter. Thus, whilst the other human lens UV filters, kynurenine (Kyn) and 3-hydroxykynurenine glucoside (3HKG), appear to require activation by UV-light in order to react with proteins, 3OHKyn can modify crystallins in the absence of light, under conditions of low oxygen tension, and in the presence of glutathione concentrations found in the nucleus of an aged lens. Its reactivity is increased in the presence of both light and oxygen. The contributions of these parameters to the reactivity of 3OHKyn are discussed, with respect to the aetiology of senile nuclear cataract.


Subject(s)
Crystallins/chemistry , Kynurenine/analogs & derivatives , Animals , Cattle , Fluorescence , Glutathione/chemistry , Hydrogen-Ion Concentration , Kynurenine/chemistry , Oxidation-Reduction , Oxygen/chemistry , Pigmentation , Protein Binding , Sunlight , Ultraviolet Rays
10.
Exp Eye Res ; 63(6): 639-47, 1996 Dec.
Article in English | MEDLINE | ID: mdl-9068371

ABSTRACT

The high-molecular-weight (HMW) protein from the lens is composed mostly of alpha-crystallin in a highly aggregated state. Bovine HMW protein was carefully separated from alpha-crystallin by size-exclusion chromatography. alpha-Crystallin has chaperone-like ability whereby it stabilizes other proteins under conditions of stress (e.g. heat). Comparison of bovine HMW protein and alpha-crystallin shows that the HMW protein has a markedly reduced chaperone ability compared to alpha-crystallin. However, in contrast to the results of other workers, we observe no alteration with age in the ability of alpha-crystallin to act as a chaperone. Using electrospray ionisation mass spectrometry, changes in the phosphorylation of the alpha-crystallin subunits with age have been quantified. Phosphorylation of alpha-crystallin occurs early in life but does not alter in proportion after about three years of age. In addition, phosphorylation of the A subunit of alpha-crystallin has little effect on its chaperone ability. As is found in the artificially prepared HMW complex of alpha- and gamma-crystallin, NMR spectroscopy shows that in the naturally occurring HMW protein, the short C-terminal extension of the alpha B subunit has lost its flexibility whereas the alpha A subunit extension is still flexible. Post-translational modifications therefore seem to have little effect on the chaperone action of alpha-crystallin, but alterations in the quaternary structure of alpha-crystallin via incorporation into the HMW aggregate, lead to major changes in the chaperone ability of the protein. The results are consistent with the notion that one of the contributing factors to cataract formation in the lens is the depletion of alpha-crystallin with age as it is converted into the HMW protein.


Subject(s)
Aging/metabolism , Crystallins/chemistry , Lens, Crystalline/chemistry , Alcohol Dehydrogenase/chemistry , Animals , Cattle , Crystallins/metabolism , Crystallins/pharmacology , Lens, Crystalline/physiology , Magnetic Resonance Spectroscopy , Mass Spectrometry , Molecular Weight , Phosphorylation , Structure-Activity Relationship
11.
Exp Eye Res ; 59(5): 607-16, 1994 Nov.
Article in English | MEDLINE | ID: mdl-9492762

ABSTRACT

alpha-, beta- and gamma-crystallins from bovine lens contain flexible terminal extensions which are readily observed by NMR spectroscopy. By monitoring these resonances, NMR spectroscopy therefore offers a means of examining specific protein-protein interactions in crystallin mixtures. In this paper, a 1H NMR spectroscopic study of bovine lens nuclear and cortical homogenates and various crystallin mixtures is presented. In both homogenates, resonances from the flexible C-terminal extensions of alpha-crystallin and the N-terminal extension of beta B2-crystallin are readily observed suggesting that these regions are not involved in crystallin-crystallin interactions. In the cortical homogenate, resonances from the short N-terminal extension of gamma S-crystallin are also present. The cortical homogenate gives rise to more intense resonances than the nuclear homogenate, suggesting that the cortical region has many more mobile crystallin regions. In both homogenates, the C-terminal extension of beta B2-crystallin and the very short C-terminal extension of gamma B-crystallin are not observed. Thus, the C-terminal regions of these proteins are involved in interactions with other crystallins. Similar effects are observed upon mixing of the individual crystallins, e.g. the C-terminal extension of gamma B-crystallin is absent in spectra of mixtures of total gamma-crystallin and high-molecular-weight beta-crystallin aggregates (beta H). Overall, the results are consistent with a short-range order for the crystallins within the lens.


Subject(s)
Crystallins/chemistry , Lens, Crystalline/chemistry , Animals , Cattle , Lens Cortex, Crystalline/chemistry , Lens Nucleus, Crystalline/chemistry , Magnetic Resonance Spectroscopy
12.
Exp Eye Res ; 59(2): 211-20, 1994 Aug.
Article in English | MEDLINE | ID: mdl-7835410

ABSTRACT

Two-dimensional 1H NMR spectroscopic studies are presented on bovine gamma S- and gamma B-crystallin. In gamma S-crystallin, the four N-terminal residues have great flexibility compared with the rest of the molecule and assume a random coil conformation. NMR spectroscopy and electrospray mass spectrometry show that the N-terminal residue is acetylated. Thus, gamma S-crystallin is similar to the acidic beta-crystallins in having a flexible N-terminal extension and an N-terminus that is blocked with an acetyl group but no C-terminal extension. In addition to the short N-terminal extension in gamma S-crystallin, other unassigned resonances are also observed in the NMR spectra. In gamma B-crystallin, however, cross-peaks in the NH to alpha-CH region of the spectrum are essentially restricted to the last three residues of the C-terminal domain. The NMR data imply that gamma S-crystallin has a more flexible structure than gamma B-crystallin. Sedimentation equilibrium studies on gamma S-crystallin are consistent with this proposal. Resonances from the N-terminal extension of gamma S-crystallin are not affected by the presence of alpha-crystallin implying that this region is not involved in interactions between the two molecules. It is concluded that gamma S-crystallin shares structural properties which are intermediate between the beta- and gamma-crystallins.


Subject(s)
Crystallins/chemistry , Protein Structure, Tertiary , Animals , Cattle , Magnetic Resonance Spectroscopy , Mass Spectrometry , Molecular Weight
14.
Biochim Biophys Acta ; 1204(2): 195-206, 1994 Feb 16.
Article in English | MEDLINE | ID: mdl-8142460

ABSTRACT

Bovine lens alpha-crystallin has recently been shown to function as a molecular chaperone by stabilizing proteins against heat denaturation (Horwitz, J. (1992) Proc. Natl. Acad. Sci. USA, 89, 10449-10453). An investigation, using a variety of physico-chemical methods, is presented into the mechanism of stabilization. alpha-Crystallin exhibits properties of a surfactant. Firstly, a plot of conductivity of alpha-crystallin versus concentration shows a distinct inflection in its profile, i.e., a critical micelle concentration (cmc), over a concentration range from 0.15 to 0.17 mM. Gel chromatographic and 1H-NMR spectroscopic studies spanning the cmc indicate no change in the aggregated state of alpha-crystallin implying that a change in conformation of the aggregate occurs at the cmc. Secondly, spectrophotometric studies of the rate of heat-induced aggregation and precipitation of alcohol dehydrogenase (ADH), beta L- and gamma-crystallin in the presence of alpha-crystallin and a variety of synthetic surfactants show that stabilization against precipitation results from hydrophobic interactions with alpha-crystallin and monomeric anionic surfactants. Per mole of subunit or monomer, alpha-crystallin is the most efficient at stabilization. alpha-Crystallin, however, does not preserve the activity of ADH after heating. After heat inactivation, gel permeation HPLC indicates that ADH and alpha-crystallin form a high molecular weight aggregate. Similar results are obtained following incubation of beta L- and gamma-crystallin with alpha-crystallin. 1H-NMR spectroscopy of mixtures of alpha- and beta L-crystallin, in their native states, reveals that the C-terminus of beta B2-crystallin is involved in interaction with alpha-crystallin. In the case of gamma- and alpha-crystallin mixtures, a specific interaction occurs between alpha-crystallin and the C-terminal region of gamma B-crystallin, an area which is known from the crystal structure to be relatively hydrophobic and to be involved in intermolecular interactions. The short, flexible C-terminal extensions of alpha-crystallin are not involved in specific interactions with these proteins. It is concluded that alpha-crystallin interacts with native proteins in a weak manner. Once a protein has become denatured, however, the soluble complex with alpha-crystallin cannot be readily dissociated. In the aging lens this finding may have relevance to the formation of high molecular weight crystallin aggregates.


Subject(s)
Crystallins/chemistry , Alcohol Dehydrogenase/chemistry , Animals , Cattle , Chromatography , Electric Conductivity , Hot Temperature , Magnetic Resonance Spectroscopy , Spectrophotometry , Surface Properties
15.
Biochim Biophys Acta ; 1164(1): 22-8, 1993 Jun 24.
Article in English | MEDLINE | ID: mdl-8518294

ABSTRACT

The stability of bovine lens alpha-crystallin with respect to temperature, pH and urea has been investigated by 1H and 31P-NMR spectroscopy. The 1H and 31P-NMR spectra of alpha-crystallin show little change with temperature up to 75 degrees C, indicating that alpha-crystallin has great thermal stability and does not undergo any major change in structure with temperature. 1H spectral studies of alpha-crystallin and its isolated alpha A and alpha B subunits reveal a marked difference in the stability of these species. It is found that, at pH 2.5, alpha A-crystallin adopts a native conformation whereas alpha B-crystallin is denatured. On the other hand, the two subunits when part of the total alpha-crystallin aggregate adopt a native conformation at pH 2.5, but in the presence of 0.1 M glycine the alpha B subunits become denatured. Thus, alpha A-crystallin and total alpha-crystallin are more stable species than alpha B-crystallin and, in total alpha-crystallin, there is an interaction between the compact domains of the alpha A and alpha B subunits that leads to enhanced stability. Finally, changes in the 1H and 31P-NMR spectra of alpha A-crystallin and alpha B-crystallin in the presence of varying concentrations of urea are consistent with a two-domain model for alpha-crystallin subunits with the C-terminal domain being less stable and unfolding first in the presence of urea.


Subject(s)
Crystallins/chemistry , Animals , Cattle , Hydrogen-Ion Concentration , Magnetic Resonance Spectroscopy/methods , Protein Structure, Tertiary , Temperature , Urea
16.
FEBS Lett ; 311(2): 143-9, 1992 Oct 19.
Article in English | MEDLINE | ID: mdl-1397302

ABSTRACT

Two-dimensional 1H NMR spectroscopy of bovine eye lens alpha-crystallin and its isolated alpha A and alpha B subunits reveals that these aggregates have short and very flexible C-terminal extensions of eight (alpha A) and ten (alpha B) amino acids which adopt little preferred conformation in solution. Total alpha-crystallin forms a tighter aggregate than the isolated alpha A and alpha B subunit aggregates. Our results are consistent with a micelle model for alpha-crystallin quaternary structure. The presence of terminal extensions is a general feature of those crystallins, alpha and beta, which form aggregates.


Subject(s)
Crystallins/chemistry , Amino Acid Sequence , Animals , Cattle , Magnetic Resonance Spectroscopy , Molecular Sequence Data , Molecular Weight , Protein Conformation
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