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1.
Nature ; 630(8018): 1003-1011, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38926614

ABSTRACT

Transposases drive chromosomal rearrangements and the dissemination of drug-resistance genes and toxins1-3. Although some transposases act alone, many rely on dedicated AAA+ ATPase subunits that regulate site selectivity and catalytic function through poorly understood mechanisms. Using IS21 as a model transposase system, we show how an ATPase regulator uses nucleotide-controlled assembly and DNA deformation to enable structure-based site selectivity, transposase recruitment, and activation and integration. Solution and cryogenic electron microscopy studies show that the IstB ATPase self-assembles into an autoinhibited pentamer of dimers that tightly curves target DNA into a half-coil. Two of these decamers dimerize, which stabilizes the target nucleic acid into a kinked S-shaped configuration that engages the IstA transposase at the interface between the two IstB oligomers to form an approximately 1 MDa transpososome complex. Specific interactions stimulate regulator ATPase activity and trigger a large conformational change on the transposase that positions the catalytic site to perform DNA strand transfer. These studies help explain how AAA+ ATPase regulators-which are used by classical transposition systems such as Tn7, Mu and CRISPR-associated elements-can remodel their substrate DNA and cognate transposases to promote function.


Subject(s)
AAA Domain , Adenosine Triphosphatases , Transposases , Adenosine Triphosphatases/chemistry , Adenosine Triphosphatases/metabolism , Adenosine Triphosphatases/ultrastructure , Catalytic Domain , Cryoelectron Microscopy , DNA/chemistry , DNA/genetics , DNA/metabolism , DNA/ultrastructure , DNA Transposable Elements/genetics , Enzyme Activation , Models, Molecular , Protein Multimerization , Transposases/metabolism , Transposases/chemistry
2.
Nat Commun ; 14(1): 2335, 2023 04 22.
Article in English | MEDLINE | ID: mdl-37087515

ABSTRACT

Transposases are ubiquitous enzymes that catalyze DNA rearrangement events with broad impacts on gene expression, genome evolution, and the spread of drug-resistance in bacteria. Here, we use biochemical and structural approaches to define the molecular determinants by which IstA, a transposase present in the widespread IS21 family of mobile elements, catalyzes efficient DNA transposition. Solution studies show that IstA engages the transposon terminal sequences to form a high-molecular weight complex and promote DNA integration. A 3.4 Šresolution structure of the transposase bound to transposon ends corroborates our biochemical findings and reveals that IstA self-assembles into a highly intertwined tetramer that synapses two supercoiled terminal inverted repeats. The three-dimensional organization of the IstA•DNA cleaved donor complex reveals remarkable similarities with retroviral integrases and classic transposase systems, such as Tn7 and bacteriophage Mu, and provides insights into IS21 transposition.


Subject(s)
DNA Transposable Elements , Transposases , Transposases/genetics , Transposases/metabolism , Base Sequence , DNA Transposable Elements/genetics , Integrases/metabolism , Bacteria/genetics
3.
Biomedicines ; 10(8)2022 Jul 28.
Article in English | MEDLINE | ID: mdl-36009372

ABSTRACT

The global spread of bacterial antimicrobial resistance is associated to millions of deaths from bacterial infections per year, many of which were previously treatable. This, combined with slow antibiotic deployment, has created an urgent need for developing new antibiotics. A still clinically unexploited mode of action consists in suppressing bacterial cell division. FtsZ, an assembling GTPase, is the key protein organizing division in most bacteria and an attractive target for antibiotic discovery. Nevertheless, developing effective antibacterial inhibitors targeting FtsZ has proven challenging. Here we review our decade-long multidisciplinary research on small molecule inhibitors of bacterial division, in the context of global efforts to discover FtsZ-targeting antibiotics. We focus on methods to characterize synthetic inhibitors that either replace bound GTP from the FtsZ nucleotide binding pocket conserved across diverse bacteria or selectively bind into the allosteric site at the interdomain cleft of FtsZ from Bacillus subtilis and the pathogen Staphylococcus aureus. These approaches include phenotype screening combined with fluorescence polarization screens for ligands binding into each site, followed by detailed cytological profiling, and biochemical and structural studies. The results are analyzed to design an optimized workflow to identify effective FtsZ inhibitors, and new approaches for the discovery of FtsZ-targeting antibiotics are discussed.

4.
J Med Chem ; 64(9): 5730-5745, 2021 05 13.
Article in English | MEDLINE | ID: mdl-33908781

ABSTRACT

Bacterial resistance to antibiotics makes previously manageable infections again disabling and lethal, highlighting the need for new antibacterial strategies. In this regard, inhibition of the bacterial division process by targeting key protein FtsZ has been recognized as an attractive approach for discovering new antibiotics. Binding of small molecules to the cleft between the N-terminal guanosine triphosphate (GTP)-binding and the C-terminal subdomains allosterically impairs the FtsZ function, eventually inhibiting bacterial division. Nonetheless, the lack of appropriate chemical tools to develop a binding screen against this site has hampered the discovery of FtsZ antibacterial inhibitors. Herein, we describe the first competitive binding assay to identify FtsZ allosteric ligands interacting with the interdomain cleft, based on the use of specific high-affinity fluorescent probes. This novel assay, together with phenotypic profiling and X-ray crystallographic insights, enables the identification and characterization of FtsZ inhibitors of bacterial division aiming at the discovery of more effective antibacterials.


Subject(s)
Anti-Bacterial Agents/chemistry , Bacterial Proteins/metabolism , Cytoskeletal Proteins/metabolism , Allosteric Site , Anti-Bacterial Agents/metabolism , Anti-Bacterial Agents/pharmacology , Bacillus subtilis/drug effects , Bacillus subtilis/metabolism , Bacterial Proteins/antagonists & inhibitors , Benzamides/chemistry , Benzamides/metabolism , Benzamides/pharmacology , Crystallography, X-Ray , Cytoskeletal Proteins/antagonists & inhibitors , Fluorescence Polarization , Fluorescent Dyes/chemistry , Fluorescent Dyes/metabolism , Ligands , Microbial Sensitivity Tests , Protein Binding , Pyridines/chemistry , Pyridines/metabolism , Pyridines/pharmacology , Small Molecule Libraries/chemistry , Small Molecule Libraries/metabolism , Small Molecule Libraries/pharmacology , Staphylococcus aureus/drug effects , Staphylococcus aureus/metabolism , Structure-Activity Relationship
5.
FEBS J ; 287(18): 4048-4067, 2020 09.
Article in English | MEDLINE | ID: mdl-31997533

ABSTRACT

The essential bacterial division protein FtsZ uses GTP binding and hydrolysis to assemble into dynamic filaments that treadmill around the Z-ring, guiding septal wall synthesis and cell division. FtsZ is a structural homolog of tubulin and a target for discovering new antibiotics. Here, using FtsZ from the pathogen S. aureus (SaFtsZ), we reveal that, prior to assembly, FtsZ monomers require nucleotide binding for folding; this is possibly relevant to other mesophilic FtsZs. Apo-SaFtsZ is essentially unfolded, as assessed by nuclear magnetic resonance and circular dichroism. Binding of GTP (≥ 1 mm) dramatically shifts the equilibrium toward the active folded protein. Supportingly, SaFtsZ refolded with GDP crystallizes in a native structure. Apo-SaFtsZ also folds with 3.4 m glycerol, enabling high-affinity GTP binding (KD 20 nm determined by isothermal titration calorimetry) similar to thermophilic stable FtsZ. Other stabilizing agents that enhance nucleotide binding include ethylene glycol, trimethylamine N-oxide, and several bacterial osmolytes. High salt stabilizes SaFtsZ without bound nucleotide in an inactive twisted conformation. We identified a cavity behind the SaFtsZ-GDP nucleotide-binding pocket that harbors different small compounds, which is available for extended nucleotide-replacing inhibitors. Furthermore, we devised a competition assay to detect any inhibitors that overlap the nucleotide site of SaFtsZ, or Escherichia coli FtsZ, employing osmolyte-stabilized apo-FtsZs and the specific fluorescence anisotropy change in mant-GTP upon dissociation from the protein. This robust assay provides a basis to screening for high-affinity GTP-replacing ligands, which combined with structural studies and phenotypic profiling should facilitate development of a next generation of FtsZ-targeting antibacterial inhibitors.


Subject(s)
Bacterial Proteins/chemistry , Cytoskeletal Proteins/chemistry , Nucleotides/chemistry , Protein Folding , Staphylococcus aureus/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cell Division , Circular Dichroism , Crystallography, X-Ray , Cytoskeletal Proteins/genetics , Cytoskeletal Proteins/metabolism , Kinetics , Ligands , Models, Molecular , Nucleotides/metabolism , Osmolar Concentration , Protein Binding , Staphylococcus aureus/genetics
6.
Mol Microbiol ; 111(4): 965-980, 2019 04.
Article in English | MEDLINE | ID: mdl-30636070

ABSTRACT

Cell division in most bacteria is directed by FtsZ, a conserved tubulin-like GTPase that assembles forming the cytokinetic Z-ring and constitutes a target for the discovery of new antibiotics. The developmental regulator MciZ, a 40-amino acid peptide endogenously produced during Bacillus subtilis sporulation, halts cytokinesis in the mother cell by inhibiting FtsZ. The crystal structure of a FtsZ:MciZ complex revealed that bound MciZ extends the C-terminal ß-sheet of FtsZ blocking its assembly interface. Here we demonstrate that exogenously added MciZ specifically inhibits B. subtilis cell division, sporulation and germination, and provide insight into MciZ molecular recognition by FtsZ from different bacteria. MciZ and FtsZ form a complex with sub-micromolar affinity, analyzed by analytical ultracentrifugation, laser biolayer interferometry and isothermal titration calorimetry. Synthetic MciZ analogs, carrying single amino acid substitutions impairing MciZ ß-strand formation or hydrogen bonding to FtsZ, show a gradual reduction in affinity that resembles their impaired activity in bacteria. Gene sequences encoding MciZ spread across genus Bacillus and synthetic MciZ slows down cell division in Bacillus species, including pathogenic Bacillus cereus and Bacillus anthracis. Moreover, B. subtilis MciZ is recognized by the homologous FtsZ from Staphylococcus aureus and inhibits division when it is expressed into S. aureus cells.


Subject(s)
Bacillus subtilis/drug effects , Bacterial Proteins/antagonists & inhibitors , Cell Division/drug effects , Cytoskeletal Proteins/antagonists & inhibitors , Peptides/pharmacology , Amino Acid Substitution , Bacillus subtilis/genetics , Bacterial Proteins/genetics , Binding Sites , Cytoskeletal Proteins/genetics , Gene Expression Regulation, Bacterial , Peptides/chemical synthesis , Protein Binding , Staphylococcus aureus/drug effects , Staphylococcus aureus/genetics
7.
Chem Sci ; 8(2): 1525-1534, 2017 Feb 01.
Article in English | MEDLINE | ID: mdl-28616148

ABSTRACT

FtsZ is a widely conserved tubulin-like GTPase that directs bacterial cell division and a new target for antibiotic discovery. This protein assembly machine cooperatively polymerizes forming single-stranded filaments, by means of self-switching between inactive and actively associating monomer conformations. The structural switch mechanism was proposed to involve a movement of the C-terminal and N-terminal FtsZ domains, opening a cleft between them, allosterically coupled to the formation of a tight association interface between consecutive subunits along the filament. The effective antibacterial benzamide PC190723 binds into the open interdomain cleft and stabilizes FtsZ filaments, thus impairing correct formation of the FtsZ ring for cell division. We have designed fluorescent analogs of PC190723 to probe the FtsZ structural assembly switch. Among them, nitrobenzoxadiazole probes specifically bind to assembled FtsZ rather than to monomers. Probes with several spacer lengths between the fluorophore and benzamide moieties suggest a binding site extension along the interdomain cleft. These probes label FtsZ rings of live Bacillus subtilis and Staphylococcus aureus, without apparently modifying normal cell morphology and growth, but at high concentrations they induce impaired bacterial division phenotypes typical of benzamide antibacterials. During the FtsZ assembly-disassembly process, the fluorescence anisotropy of the probes changes upon binding and dissociating from FtsZ, thus reporting open and closed FtsZ interdomain clefts. Our results demonstrate the structural mechanism of the FtsZ assembly switch, and suggest that the probes bind into the open clefts in cellular FtsZ polymers preferably to unassembled FtsZ in the bacterial cytosol.

8.
Front Microbiol ; 7: 1558, 2016.
Article in English | MEDLINE | ID: mdl-27752253

ABSTRACT

Cell division protein FtsZ is the organizer of the cytokinetic ring in almost all bacteria and a target for the discovery of new antibacterial agents that are needed to counter widespread antibiotic resistance. Bacterial cytological profiling, using quantitative microscopy, is a powerful approach for identifying the mechanism of action of antibacterial molecules affecting different cellular pathways. We have determined the cytological profile on Bacillus subtilis cells of a selection of small molecule inhibitors targeting FtsZ on different binding sites. FtsZ inhibitors lead to long undivided cells, impair the normal assembly of FtsZ into the midcell Z-rings, induce aberrant ring distributions, punctate FtsZ foci, membrane spots and also modify nucleoid length. Quantitative analysis of cell and nucleoid length combined, or the Z-ring distribution, allows categorizing FtsZ inhibitors and to distinguish them from antibiotics with other mechanisms of action, which should be useful for identifying new antibacterial FtsZ inhibitors. Biochemical assays of FtsZ polymerization and GTPase activity combined explain the cellular effects of the FtsZ polymer stabilizing agent PC190723 and its fragments. MciZ is a 40-aminoacid endogenous inhibitor of cell division normally expressed during sporulation in B. subtilis. Using FtsZ cytological profiling we have determined that exogenous synthetic MciZ is an effective inhibitor of B. subtilis cell division, Z-ring formation and localization. This finding supports our cell-based approach to screen for FtsZ inhibitors and opens new possibilities for peptide inhibitors of bacterial cell division.

9.
ACS Chem Biol ; 10(3): 834-43, 2015 Mar 20.
Article in English | MEDLINE | ID: mdl-25486266

ABSTRACT

Essential cell division protein FtsZ is considered an attractive target in the search for antibacterials with novel mechanisms of action to overcome the resistance problem. FtsZ undergoes GTP-dependent assembly at midcell to form the Z-ring, a dynamic structure that evolves until final constriction of the cell. Therefore, molecules able to inhibit its activity will eventually disrupt bacterial viability. In this work, we report a new series of small molecules able to replace GTP and to specifically inhibit FtsZ, blocking the bacterial division process. These new synthesized inhibitors interact with the GTP-binding site of FtsZ (Kd = 0.4-0.8 µM), display antibacterial activity against Gram-positive pathogenic bacteria, and show selectivity against tubulin. Biphenyl derivative 28 stands out as a potent FtsZ inhibitor (Kd = 0.5 µM) with high antibacterial activity [MIC (MRSA) = 7 µM]. In-depth analysis of the mechanism of action of compounds 22, 28, 33, and 36 has revealed that they act as effective inhibitors of correct FtsZ assembly, blocking bacterial division and thus leading to filamentous undivided cells. These findings provide a compelling rationale for the development of compounds targeting the GTP-binding site as antibacterial agents and open the door to antibiotics with novel mechanisms of action.


Subject(s)
Anti-Bacterial Agents/chemical synthesis , Bacillus subtilis/drug effects , Bacterial Proteins/antagonists & inhibitors , Biphenyl Compounds/chemical synthesis , Cytoskeletal Proteins/antagonists & inhibitors , Guanosine Triphosphate/chemistry , Methicillin-Resistant Staphylococcus aureus/drug effects , Naphthalenes/chemical synthesis , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Bacillus subtilis/chemistry , Bacillus subtilis/growth & development , Bacterial Proteins/chemistry , Binding Sites , Biphenyl Compounds/chemistry , Biphenyl Compounds/pharmacology , Cytoskeletal Proteins/chemistry , Kinetics , Methicillin-Resistant Staphylococcus aureus/chemistry , Methicillin-Resistant Staphylococcus aureus/growth & development , Microbial Sensitivity Tests , Models, Molecular , Naphthalenes/chemistry , Naphthalenes/pharmacology , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Structure-Activity Relationship
10.
Environ Microbiol ; 16(4): 1193-201, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24373136

ABSTRACT

The increasing use of the 7-valent pneumococcal conjugate vaccine has been accompanied by the rise of non-vaccine serotypes colonizing the human nasopharynx. The vast majority of infections are caused by microorganisms that grow in biofilms. It has recently been shown that the formation of Streptococcus pneumoniae biofilms in vivo and in vitro is hindered by the presence of capsular polysaccharide. The biofilm-forming capacity of pneumococcal clinical isolates with different types of capsular polysaccharide and various isogenic transformants was examined. Strains of serotypes 19A and 19F, but not 19B and 19C, formed ≥ 80% of the quantity of biofilm associated with a non-encapsulated control strain. Strains of serogroup 6 also showed significant biofilm-forming capacity. The capsules of serotypes 19A and 19F, and serogroup 6 contain the disaccharides α-D-Glcp-(1→2)-α-L-Rhap-(1→ and α-D-Glcp-(1→3)-α-L-Rhap-(1→. Serotype 18A and serotypes 18B/18C have very similar capsular disaccharides: α-D-GlcpNAc-(1→3)-ß-L-Rhap-(1→ and α-D-Glcp-(1→3)-ß-L-Rhap-(1→ respectively. However, the strains of serogroup 18 showed impaired biofilm formation. These results indicate that the chemical composition/structure of the capsular polysaccharide is crucial to the biofilm-forming capacity of pneumococcal serotypes. Testing of the in vitro biofilm-forming ability of isogenic transformants expressing different capsular polysaccharides may help predict the emergence of colonizing, non-vaccine serotypes.


Subject(s)
Biofilms , Streptococcus pneumoniae/classification , Streptococcus pneumoniae/physiology , Humans , Nasopharynx/microbiology , Pneumococcal Infections/prevention & control , Pneumococcal Vaccines/immunology , Polysaccharides/metabolism , Serotyping , Streptococcus pneumoniae/isolation & purification , Vaccination
11.
PLoS One ; 8(12): e85076, 2013.
Article in English | MEDLINE | ID: mdl-24376868

ABSTRACT

Karyopherins are transporters involved in the bidirectional, selective and active transport of macromolecules through nuclear pores. Importin-ß1 is the paradigm of karyopherins and, together with its cargo-adapter importin-α, mediates the general nuclear import pathway. Here we show the existence of different cellular pools of both importin-α and -ß1 homologues, KapA and KapB, in the coenocytic ascomycete Aspergillus nidulans. Fluorescence analysis of haploid and diploid strains expressing KapB::GFP and/or KapA::mRFP showed patches of both karyopherins concurrently translocating long distances in apically-growing cells. Anterograde and retrograde movements allowed those patches to reach cell tips and distal regions with an average speed in the range of µm/s. This bidirectional traffic required microtubules as well as kinesin and dynein motors, since it is blocked by benomyl and also by the inactivation of the dynein/dynactin complex through nudA1 or nudK317 mutations. Deletion of Kinesin-3 motor UncA, required for the transport through detyrosinated microtubules, strongly inhibited KapA and KapB movement along hyphae. Overall, this is the first report describing the bidirectional dynamics of the main nuclear import system in coenocytic fungi. A functional link is proposed between two key cellular machines of the filamentous fungal cell: nuclear transport and the tip-growth apparatus.


Subject(s)
Aspergillus nidulans/genetics , Cell Nucleus/metabolism , Cytoplasm/physiology , Giant Cells/physiology , Karyopherins/metabolism , Active Transport, Cell Nucleus/physiology , Aspergillus nidulans/physiology , Blotting, Western , Cell Fractionation , Fluorescence , Intracellular Space/metabolism , Microscopy, Fluorescence , Microtubules/physiology , Oligonucleotides/genetics
12.
Food Chem Toxicol ; 50(3-4): 1109-17, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22273696

ABSTRACT

The photoprotective potential against UVB radiation of extracts obtained from 21 commercial macroalgae from the Phyla Ochrophyta and Rhodophyta, was evaluated in vivo, using the zebrafish embryo as a whole model organism. Our results showed that the phenolic extracts from Macrocystis pyrifera and Porphyra columbina exhibited the highest photoprotective activity, close to complete photoprotection (100%), similar to that obtained for the carrageenophytes Sarcothalia radula and Gigartina skottsbergii. Under the assayed conditions, the extracts were safe and non-toxic to the embryos at a concentration of 0.04 mg/ml PGE.


Subject(s)
Marine Biology , Microalgae/chemistry , Plant Extracts/pharmacology , Radiation-Protective Agents/pharmacology , Ultraviolet Rays , Animals , Polyphenols/isolation & purification , Zebrafish/embryology
13.
Mol Biol Cell ; 22(20): 3874-86, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21880896

ABSTRACT

Nuclear transporters mediate bidirectional macromolecule traffic through the nuclear pore complex (NPC), thus participating in vital processes of eukaryotic cells. A systematic functional analysis in Aspergillus nidulans permitted the identification of 4 essential nuclear transport pathways of a hypothetical number of 14. The absence of phenotypes for most deletants indicates redundant roles for these nuclear receptors. Subcellular distribution studies of these carriers show three main distributions: nuclear, nucleocytoplasmic, and in association with the nuclear envelope. These locations are not specific to predicted roles as exportins or importins but indicate that bidirectional transport may occur coordinately in all nuclei of a syncytium. Coinciding with mitotic NPC rearrangements, transporters dynamically modified their localizations, suggesting supplementary roles to nucleocytoplasmic transport specifically during mitosis. Loss of transportin-SR and Mex/TAP from the nuclear envelope indicates absence of RNA transport during the partially open mitosis of Aspergillus, whereas nucleolar accumulation of Kap121 and Kap123 homologues suggests a role in nucleolar disassembly. This work provides new insight into the roles of nuclear transporters and opens an avenue for future studies of the molecular mechanisms of transport among nuclei within a common cytoplasm, using A. nidulans as a model organism.


Subject(s)
Active Transport, Cell Nucleus/physiology , Aspergillus nidulans/metabolism , Cell Nucleolus/metabolism , Fungal Proteins/metabolism , Mitosis/physiology , Nuclear Pore Complex Proteins/metabolism , Nuclear Pore/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Aspergillus nidulans/genetics , Aspergillus nidulans/ultrastructure , Blotting, Western , Cell Nucleolus/genetics , Computational Biology , Cytoplasm/metabolism , Fungal Proteins/genetics , Karyopherins/genetics , Karyopherins/metabolism , Microscopy, Fluorescence , Nuclear Pore/genetics , Nuclear Pore/ultrastructure , Nuclear Pore Complex Proteins/genetics , Plasmids , RNA/genetics , RNA/metabolism , Receptors, Cytoplasmic and Nuclear/genetics , Sequence Deletion , Transduction, Genetic , beta Karyopherins/genetics , beta Karyopherins/metabolism
14.
Mol Microbiol ; 73(5): 775-89, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19656299

ABSTRACT

Conidiophore formation in Aspergillus nidulans involves a developmental programme in which vegetative hyphae give rise to an ordered succession of differentiated cells: foot cell, stalk, vesicle, metulae, phialides and conidia. The developmental transition requires factors that are expressed in vegetative hyphae that activate the expression of the main regulator of conidiation, BrlA. One such element is the bZIP-type transcription factor FlbB. We found that flbB(-) mutants show defective branching patterns and are susceptible to autolysis under high sorbitol or sucrose concentrations, revealing a role in vegetative growth. In addition, FlbB plays a role in conidiophore initiation, as its upregulation reduces conidiophore vesicle swelling and generates a reduced number of metulae. FlbB was located at the tip of growing metulae, following a similar pattern as described in vegetative hyphae. In wild-type strains, the transition from metulae to phialides could be reversed to generate vegetative hyphae, indicating the existence of a specific control point at this stage of conidiophore formation. The combined evidence points to FlbB as a key factor in the transition to asexual development, playing a role at various control points in which the process could be reversed.


Subject(s)
Aspergillus nidulans/physiology , Gene Expression Regulation, Fungal , Signal Transduction , Spores, Fungal/growth & development , Transcription Factors/physiology , Amino Acid Sequence , Aspergillus nidulans/chemistry , Aspergillus nidulans/growth & development , Fungal Proteins/genetics , Fungal Proteins/physiology , Gene Deletion , Hyphae/chemistry , Hyphae/physiology , Molecular Sequence Data , Sequence Alignment , Transcription Factors/genetics
15.
Fungal Genet Biol ; 46(6-7): 506-15, 2009.
Article in English | MEDLINE | ID: mdl-19318129

ABSTRACT

In eukaryotes, the principal nuclear import pathway is driven by the importin alpha/beta1 heterodimer. KapA, the Aspergillus nidulans importin alpha, is an essential protein. We generated a conditional allele, kapA31, mimicking the srp1-31 allele in Saccharomyces cerevisiae. KapA31 carries a Ser111Phe amino acid substitution which, at the restrictive temperature of 42 degrees C, reduces nuclear import of cargos containing classical nuclear-localization-sequences, cNLS. Using kapA31, we have demonstrated the role of the importin alpha in the nuclear accumulation of the light-dependent developmental regulator VeA. KapA have additional tasks in the cell, as reported for other members of the importin alpha family. KapA participates at different regulatory stages of asexual and sexual development, being required for the completion of both reproductive cycles with the formation of conidiospores and ascospores, respectively. Finally, KapA also mediates in different pathways of secondary metabolism having a dual role: positively for penicillin production and negatively for mycotoxin biosynthesis.


Subject(s)
Active Transport, Cell Nucleus , Aspergillus nidulans/growth & development , Aspergillus nidulans/metabolism , Fungal Proteins/metabolism , alpha Karyopherins/metabolism , Amino Acid Sequence , Aspergillus nidulans/chemistry , Aspergillus nidulans/genetics , Fungal Proteins/chemistry , Fungal Proteins/genetics , Molecular Sequence Data , Reproduction, Asexual , Sequence Alignment , alpha Karyopherins/chemistry , alpha Karyopherins/genetics
16.
Biochem J ; 414(3): 419-29, 2008 Sep 15.
Article in English | MEDLINE | ID: mdl-18471095

ABSTRACT

To investigate cation adaptation and homoeostasis in Aspergillus nidulans, two transcription-factor-encoding genes have been characterized. The A. nidulans orthologue crzA of the Saccharomyces cerevisiae CRZ1 gene, encoding a transcription factor mediating gene regulation by Ca(2+), has been identified and deleted. The crzA deletion phenotype includes extreme sensitivity to alkaline pH, Ca(2+) toxicity and aberrant morphology connected with alterations of cell-wall-related phenotypes such as reduced expression of a chitin synthase gene, chsB. A fully functional C-terminally GFP (green fluorescent protein)-tagged form of the CrzA protein is apparently excluded from nuclei in the absence of added Ca(2+), but rapidly accumulates in nuclei upon exposure to Ca(2+). In addition, the previously identified sltA gene, which has no identifiable homologues in yeasts, was deleted, and the resulting phenotype includes considerably enhanced toxicity by a number of cations other than Ca(2+) and also by alkaline pH. Reduced expression of a homologue of the S. cerevisiae P-type ATPase Na(+) pump gene ENA1 might partly explain the cation sensitivity of sltA-null strains. Up-regulation of the homologue of the S. cerevisiae vacuolar Ca(2+)/H(+) exchanger gene VCX1 might explain the lack of Ca(2+) toxicity to null-sltA mutants, whereas down-regulation of this gene might be responsible for Ca(2+) toxicity to crzA-null mutants. Both crzA and sltA encode DNA-binding proteins, and the latter exerts both positive and negative gene regulation.


Subject(s)
Aspergillus nidulans/metabolism , Cations, Divalent/metabolism , Fungal Proteins/physiology , Transcription Factors/physiology , Amino Acid Sequence , Aspergillus nidulans/drug effects , Aspergillus nidulans/genetics , Calcium/metabolism , Calcium/toxicity , Cations, Divalent/toxicity , DNA-Binding Proteins/analysis , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Electrophoretic Mobility Shift Assay , Fungal Proteins/analysis , Fungal Proteins/genetics , Molecular Sequence Data , Mutation , Phylogeny , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Transcription Factors/analysis , Transcription Factors/genetics , Zinc Fingers
17.
Mol Biol Cell ; 19(4): 1439-49, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18216285

ABSTRACT

Hyphal tip growth in fungi is important because of the economic and medical importance of fungi, and because it may be a useful model for polarized growth in other organisms. We have investigated the central questions of the roles of cytoskeletal elements and of the precise sites of exocytosis and endocytosis at the growing hyphal tip by using the model fungus Aspergillus nidulans. Time-lapse imaging of fluorescent fusion proteins reveals a remarkably dynamic, but highly structured, tip growth apparatus. Live imaging of SYNA, a synaptobrevin homologue, and SECC, an exocyst component, reveals that vesicles accumulate in the Spitzenkörper (apical body) and fuse with the plasma membrane at the extreme apex of the hypha. SYNA is recycled from the plasma membrane by endocytosis at a collar of endocytic patches, 1-2 mum behind the apex of the hypha, that moves forward as the tip grows. Exocytosis and endocytosis are thus spatially coupled. Inhibitor studies, in combination with observations of fluorescent fusion proteins, reveal that actin functions in exocytosis and endocytosis at the tip and in holding the tip growth apparatus together. Microtubules are important for delivering vesicles to the tip area and for holding the tip growth apparatus in position.


Subject(s)
Aspergillus nidulans/growth & development , Actins/antagonists & inhibitors , Actins/genetics , Actins/metabolism , Aspergillus nidulans/drug effects , Aspergillus nidulans/genetics , Aspergillus nidulans/metabolism , Benomyl/pharmacology , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Cytochalasins/pharmacology , Endocytosis , Exocytosis , Fungal Proteins/genetics , Fungal Proteins/metabolism , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Hyphae/drug effects , Hyphae/growth & development , Hyphae/metabolism , Microfilament Proteins/genetics , Microfilament Proteins/metabolism , Microscopy, Fluorescence , Models, Biological , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , SNARE Proteins/genetics , SNARE Proteins/metabolism , Thiazolidines/pharmacology , Tropomyosin/genetics , Tropomyosin/metabolism
18.
Mol Microbiol ; 67(4): 891-905, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18179595

ABSTRACT

AbpA, SlaB and AmpA, three demonstrated components of the endocytic internalization machinery, are strongly polarized in Aspergillus nidulans hyphae, forming a ring that embraces the hyphal tip, leaving an area of exclusion at the apex. AbpA, a prototypic endocytic internalization marker, localizes to highly motile and transient (average half life, 24 +/- 5 s) peripheral punctate structures overlapping with actin patches, which also predominate in the tip. SlaB also localizes to peripheral patches, but these are markedly more abundant and cortical than those of AbpA. In contrast to its polarized distribution in hyphae, endocytic patches show random distribution during the isotropic growth phase preceding polarity establishment, but polarize as soon as a germtube primordium emerges from the swelled conidiospore. Thus, while endocytosis can occur along the hyphae, the apical predominance and the spatial organization of actin patches and of the above endocytic machinery proteins as a slightly subapical ring strongly suggests that tight spatial coupling of apical secretion and subapical compensatory endocytosis underlies hyphal growth. In agreement, the phenotype of a null slaB allele indicates that endocytosis is essential.


Subject(s)
Actins/metabolism , Aspergillus nidulans/metabolism , Cytoskeleton/metabolism , Fungal Proteins/metabolism , Aspergillus nidulans/genetics , Cell Polarity , Endocytosis , Genes, Fungal , Hyphae/metabolism
19.
Fungal Genet Biol ; 45(3): 278-91, 2008 Mar.
Article in English | MEDLINE | ID: mdl-17890114

ABSTRACT

In eukaryotic cells, importin alpha is the major carrier for transport protein cargoes into the nucleus. We characterize here kapA, the single Aspergillus nidulans gene encoding an importin alpha. Using an affinity approach, we identify six potential interactors of KapA(50), a deleted version of KapA lacking the autoinhibitory importin-beta-binding domain. One such interactor is NapB, the A. nidulans orthologue of Saccharomyces cerevisiae Vps75p, a histone chaperone member of the Nap/SET family of proteins that additionally plays a cytosolic role in vacuolar protein sorting. NapB, but not its close relative NapA (the A. nidulans orthologue of yeast Nap1p) interacts directly with KapA(50) in pull down assays, despite the fact that NapB does not contain a classical nuclear localization sequence. NapB is a nuclear protein which exits nuclei at the onset of mitosis when two simultaneous mechanisms might be acting, the partial disassembly of the nuclear pore complexes and as yet unidentified posttranslational modification of NapB. The mitotic cytosolic localization of NapB might facilitate its putative role in the sorting of protein cargoes to the vacuole. In addition, we show that NapB and the mitotic B-type cyclin NimE compete for in vitro binding to KapA.


Subject(s)
Aspergillus nidulans/metabolism , Fungal Proteins/metabolism , Nuclear Proteins/metabolism , alpha Karyopherins/metabolism , Active Transport, Cell Nucleus , Aspergillus nidulans/genetics , Cell Nucleus/metabolism , Chromatography, Affinity , Cytoplasm/metabolism , Electrophoresis, Polyacrylamide Gel , Fungal Proteins/genetics , Mitosis/genetics , Nuclear Proteins/genetics , Protein Binding , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , alpha Karyopherins/genetics
20.
Mol Microbiol ; 63(1): 242-55, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17163983

ABSTRACT

The veA gene is a light-dependent regulator governing development and secondary metabolism in Aspergillus nidulans. We have identified a putative bipartite nuclear localization signal (NLS) motif in the A. nidulans VeA amino acid sequence and demonstrated its functionality when expressed in yeast. Furthermore, migration of VeA to the nucleus was dependent on the importin alpha. This bipartite NLS is also functional when VeA is expressed in A. nidulans. Interestingly, we found that VeA migration to the nucleus is light-dependent. While in the dark VeA is located mainly in the nuclei, under light VeA is found abundantly in the cytoplasm. The VeA1 mutant protein (lacking the first 36 amino acids at the N-terminus) was found predominantly in the cytoplasm independent of illumination. This indicates that the truncated bipartite NLS in VeA1 is not functional and fails to respond to light. These results might explain the lack of the morphological light-dependent response in strains carrying the veA1 allele. We also evaluated the effect of light on production of the mycotoxin sterigmatocystin in a veA wild-type and the veA1 mutant strains and found that the highest amount of toxin was produced by the veA+ strain growing in the dark, condition favouring accumulation of VeA in the nucleus.


Subject(s)
Aspergillus nidulans/metabolism , Cell Nucleus/metabolism , Light , alpha Karyopherins/metabolism , Aspergillus nidulans/physiology , Biological Transport , Fungal Proteins/metabolism , Subcellular Fractions/radiation effects
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