Modeling the Electrical Activity of the Heart via Transfer Functions and Genetic Algorithms.

Although healthcare and medical technology have advanced significantly over the past few decades, heart disease continues to be a major cause of mortality globally. Electrocardiography (ECG) is one of the most widely used tools for the detection of heart diseases. This study presents a mathematical model based on transfer functions that allows for the exploration and optimization of heart dynamics in Laplace space using a genetic algorithm (GA). The transfer function parameters were fine-tuned using the GA, with clinical ECG records serving as reference signals. The proposed model, which is based on polynomials and delays, approximates a real ECG with a root-mean-square error of 4.7% and an R2 value of 0.72. The model achieves the periodic nature of an ECG signal by using a single periodic impulse input. Its simplicity makes it possible to adjust waveform parameters with a predetermined understanding of their effects, which can be used to generate both arrhythmic patterns and healthy signals. This is a notable advantage over other models that are burdened by a large number of differential equations and many parameters.

Microfabrication with Very Low-Average Power of Green Light to Produce PDMS Microchips.

In this article, we show an alternative low-cost fabrication method to obtain poly(dimethyl siloxane) (PDMS) microfluidic devices. The proposed method allows the inscription of micron resolution channels on polystyrene (PS) surfaces, used as a mold for the wanted microchip's production, by applying a high absorption coating film on the PS surface to ablate it with a focused low-power visible laser. The method allows for obtaining micro-resolution channels at powers between 2 and 10 mW and can realize any two-dimensional polymeric devices. The effect of the main processing parameters on the channel's geometry is presented.

Spatio-temporal secondary instabilities near the Turing-Hopf bifurcation.

In this work, we provide a framework to understand and quantify the spatiotemporal structures near the codimension-two Turing-Hopf point, resulting from secondary instabilities of Mixed Mode solutions of the Turing-Hopf amplitude equations. These instabilities are responsible for solutions such as (1) patterns which change their effective wavenumber while they oscillate as well as (2) phase instability combined with a spatial pattern. The quantification of these instabilities is based on the solution of the fourth order polynomial for the dispersion relation, which is solved using perturbation techniques. With the proposed methodology, we were able to identify and numerically corroborate that these two kinds of solutions are generalizations of the well known Eckhaus and Benjamin-Feir-Newell instabilities, respectively. Numerical simulations of the coupled system of real and complex Ginzburg-Landau equations are presented in space-time maps, showing quantitative and qualitative agreement with the predicted stability of the solutions. The relation with spatiotemporal intermittency and chaos is also illustrated.

Cardiac Conduction Model for Generating 12 Lead ECG Signals With Realistic Heart Rate Dynamics.

We present an extended heterogeneous oscillator model of cardiac conduction system for generation of realistic 12 lead ECG waveforms. The model consists of main natural pacemakers represented by modified van der Pol equations, and atrial and ventricular muscles, in which the depolarization and repolarization processes are described by modified FitzHugh-Nagumo equations. We incorporate an artificial RR-tachogram with the specific statistics of a heart rate, the frequency-domain characteristics of heart rate variability produced by Mayer and respiratory sinus arrhythmia waves, normally distributed additive noise and a baseline wander that couple the respiratory frequency. The standard 12 lead ECG is calculated by means of a weighted linear combination of atria and ventricle signals and thus can be fitted to clinical ECG of real subject. The model is capable to simulate accurately realistic ECG characteristics including local pathological phenomena accounting for biophysical properties of the human heart. All these features provide significant advantages over existing nonlinear cardiac models. The proposed model constitutes a useful tool for medical education and for assessment and testing of ECG signal processing software and hardware systems.

Curvature-driven spatial patterns in growing 3D domains: A mechanochemical model for phyllotaxis.

Here we discuss the formation of phyllotactic patterns in the shoot apical meristem (SAM) of plants, where the spatial distribution of the phytohormone auxin determines phyllotaxis in a domain that is growing and changing in time. We assume that the concentration of auxin modifies the mechanical properties of the domain and that the mechanical stress field in the SAM orients the flux of auxin. To study this problem we propose a mechanism for pattern formation in growing domains with variable curvature. The dynamics of chemicals is modeled by a reaction-diffusion system that produces a three dimensional pattern of chemical concentrations that changes the stress field in the domain while growing. The growth process is modeled by a phase-field order parameter which determines the location of the boundaries of the domain. This field is coupled to the chemical concentration through a curvature term that affects the local mechanical stress in the domain. The local stress changes in turn modify the chemical patterns. Our model constitutes a useful and novel approach in theoretical biology, as many developmental processes in organisms seem to be affected by the changes of curvature, size, mechanical stress and other physical aspects. Several patterns seen in many plants are reproduced under certain conditions by our model.

A measure of regularity for polygonal mosaics in biological systems.

BACKGROUND: The quantification of the spatial order of biological patterns or mosaics provides useful information as many properties are determined by the spatial distribution of their constituent elements. These are usually characterised by methods based on nearest neighbours distances, by the number of sides of cells, or by angles defined by the adjacent cells. METHODS: A measure of regularity in polygonal mosaics of different kinds in biological systems is proposed. It is based on the condition of eutacticity, expressed in terms of eutactic stars, which is closely related to regularity of polytopes. Thus it constitutes a natural measure of regularity. The proposed measure is tested with numerical and real data. Numerically is tested with a hexagonal lattice that is distorted progressively and with a non-periodic regular tiling. With real data, the distribution of oak trees in forests from three locations in the State of Querétaro, Mexico, and the spiral pattern of florets in a flowering plant are characterised. RESULTS: The proposed measure performs well and as expected while tested with a numerical experiment, as well as when applied to a known non-periodic tiling of the plane. Concerning real data, the measure is sensitive to the degree of perturbation observed in the distribution of oak trees and detects high regularity in a phyllotactic pattern studied. CONCLUSIONS: The measure here proposed has a clear geometrical meaning, establishing what regularity means, and constitute an advantageous general purposes alternative to analyse spatial distributions, capable to indicate the degree of regularity of a mosaic or an array of points.

Noise-assisted energy transport in electrical oscillator networks with off-diagonal dynamical disorder.

Noise is generally thought as detrimental for energy transport in coupled oscillator networks. However, it has been shown that for certain coherently evolving systems, the presence of noise can enhance, somehow unexpectedly, their transport efficiency; a phenomenon called environment-assisted quantum transport (ENAQT) or dephasing-assisted transport. Here, we report on the experimental observation of such effect in a network of coupled electrical oscillators. We demonstrate that by introducing stochastic fluctuations in one of the couplings of the network, a relative enhancement in the energy transport efficiency of 22.5 ± 3.6% can be observed.

Influence of modularity and regularity on disparity of atelostomata sea urchins.

A modularity approach is used to study disparity rates and evolvability of sea urchins belonging to the Atelostomata superorder. For this purpose, the pentameric sea urchin architecture is partitioned into modular spatial components and the interference between modules is quantified using areas and a measurement of the regularity of the spatial partitions. This information is used to account for the variability through time (disparity) and potential for morphological variation and evolution (evolvability) in holasteroid echinoids. We obtain that regular partitions of the space produce modules with high modular integrity, whereas irregular partitions produce low modular integrity; the former ones are related with high morphological disparity (facilitation hypothesis). Our analysis also suggests that a pentameric body plan with low regularity rates in Atelostomata reflects a stronger modular integration among modules than within modules, which could favors bilaterality against radial symmetry. Our approach constitutes a theoretical platform to define and quantify spatial organization in partitions of the space that can be related to modules in a morphological analysis.