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1.
J R Soc Interface ; 20(208): 20230349, 2023 11.
Article in English | MEDLINE | ID: mdl-38016640

ABSTRACT

An instrumental discovery in comparative and developmental biology is the existence of assembly archetypes that synthesize the vast diversity of organisms' body plans-from legs and wings to human arms-into simple, interpretable and general design principles. Here, we combine a novel mathematical formalism based on category theory with experimental data to show that similar 'assembly archetypes' exist at the larger organization scale of ecological communities when assembling a species pool across diverse environmental contexts, particularly when species interactions are highly structured. We applied our formalism to clinical data discovering two assembly archetypes that differentiate between healthy and unhealthy human gut microbiota. The concept of assembly archetypes and the methods to synthesize them can pave the way to discovering the general assembly principles of the ecological communities we observe in nature.


Subject(s)
Biota , Gastrointestinal Microbiome , Animals , Humans
2.
Math Biosci Eng ; 18(4): 4628-4647, 2021 05 27.
Article in English | MEDLINE | ID: mdl-34198457

ABSTRACT

This paper proposes a model that considers the action and timing of insulin and glucagon in glucose homeostasis after an oral stimulus. We use the Bayesian paradigm to infer kinetic rates, namely insulin and glucagon secretion, gastrointestinal emptying, and basal glucose concentration in blood. We identify two insulin scores related to glucose concentration in both blood and the gastrointestinal tract. The scores allow us to suggest a classification for individuals with impaired insulin sensitivity.


Subject(s)
Diabetes Mellitus, Type 2 , Glucose , Bayes Theorem , Blood Glucose , Glucose Tolerance Test , Humans , Insulin
3.
Math Biosci Eng ; 17(4): 4165-4183, 2020 06 15.
Article in English | MEDLINE | ID: mdl-32987574

ABSTRACT

In this paper we develop a compartmental epidemic model to study the transmission dynamics of the COVID-19 epidemic outbreak, with Mexico as a practical example. In particular, we evaluate the theoretical impact of plausible control interventions such as home quarantine, social distancing, cautious behavior and other self-imposed measures. We also investigate the impact of environmental cleaning and disinfection, and government-imposed isolation of infected individuals. We use a Bayesian approach and officially published data to estimate some of the model parameters, including the basic reproduction number. Our findings suggest that social distancing and quarantine are the winning strategies to reduce the impact of the outbreak. Environmental cleaning can also be relevant, but its cost and effort required to bring the maximum of the outbreak under control indicate that its cost-efficacy is low.


Subject(s)
Betacoronavirus , Coronavirus Infections/transmission , Models, Biological , Pandemics , Pneumonia, Viral/transmission , Basic Reproduction Number/statistics & numerical data , Bayes Theorem , COVID-19 , Computer Simulation , Coronavirus Infections/epidemiology , Coronavirus Infections/prevention & control , Disinfection/statistics & numerical data , Epidemics/prevention & control , Epidemics/statistics & numerical data , Humans , Infection Control/methods , Infection Control/statistics & numerical data , Mathematical Concepts , Mexico/epidemiology , Pandemics/prevention & control , Pandemics/statistics & numerical data , Patient Isolation/statistics & numerical data , Pneumonia, Viral/epidemiology , Pneumonia, Viral/prevention & control , Quarantine/statistics & numerical data , SARS-CoV-2
5.
Europace ; 17(10): 1533-40, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25935163

ABSTRACT

AIMS: Left atrial appendage (LAA) is the source of thrombi in up to 90% of patients with non-valvular atrial fibrillation (AF). Catheter ablation (CA) is an effective treatment for symptomatic AF and, in selected cases, LAA occlusion devices have been introduced as an alternative to oral anticoagulants (OACs). The safety and feasibility of combining CA and percutaneous LAA closure (LAAC) are unknown. METHODS AND RESULTS: Patients with symptomatic drug-refractory AF, CHADS2 score of ≥1, and CHA2DS2-VASc score ≥2 were included. Catheter ablation consisted in pulmonary vein isolation with or without roof line with radiofrequency and LAA was occluded with the Watchman or Amplatzer Cardiac Plug (ACP) devices guided by angiography and transoesophageal echocardiography. A total of 35 patients were included (71% male; 70 years). Median score was 3 on both CHA2DS2-VASc and HAS-BLED, 9% had prior stroke under OAC, and 48% had bleeding complications. Successful CA and device implantation were achieved in 97% of cases. The Watchman device was used in 29 patients and ACP in 6 patients. Periprocedural complications included three cases of cardiac tamponade. At 3 months, all patients met the criteria for successful sealing of the LAA. After a mean follow-up of 13 months (3-75), 78% of patients were free of arrhythmia recurrences and OAC was withheld in 97% of patients. CONCLUSIONS: The combination of CA and percutaneous LAAC in a single procedure is technically feasible in patients with symptomatic drug-refractory AF, high risk of stroke, and contraindications to OACs, although it is associated with a significant risk of major complications.


Subject(s)
Atrial Appendage/surgery , Atrial Fibrillation/surgery , Catheter Ablation , Pulmonary Veins/surgery , Septal Occluder Device , Aged , Anticoagulants/therapeutic use , Echocardiography, Transesophageal , Female , Follow-Up Studies , Humans , Male , Middle Aged , Treatment Outcome
7.
Europace ; 16(12): 1857-9, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25125571

ABSTRACT

AIMS: In up to 10-15% of cases, the traditional epicardial approach for left ventricular (LV) lead placement is not feasible and surgical implantation is considered the alternative. We present the implantation of a transseptal LV lead through a left subclavian access. METHODS AND RESULTS: Through the left subclavian vein access and using a system which includes a guiding catheter, a puncture screw catheter and a puncture stylet, access to the LV was achieved and the LV stimulation lead was successfully implanted. CONCLUSION: We describe the implantation of a transseptal LV stimulation lead through a left subclavian access.


Subject(s)
Defibrillators, Implantable , Electrodes, Implanted , Heart Failure/prevention & control , Heart Septum/surgery , Heart Ventricles/surgery , Prosthesis Implantation/methods , Subclavian Vein/surgery , Aged , Humans , Treatment Outcome
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