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1.
Metas enferm ; 25(2): 7-16, Mar 2022. tab
Article in Spanish | IBECS | ID: ibc-206351

ABSTRACT

Objetivo: identificar realidades sobre la salud afectiva sexual y reproductiva (SASR) de mujeres inmigrantes en Barcelona, y sus propuestas de herramientas para promoverla a través de un proceso Investigación-Acción-Participativa (IAP). Método: estudio cualitativo, descriptivo-interpretativo. Basado en la IAP, según el modelo de Kemmis y McTaggart, y coordinado por un grupo motor (GIAP). Se realizaron grupos de discusión y entrevistas a inmigrantes y profesionales siguiendo un guion (conceptos sobre SASR, conocimientos y experiencias sobre métodos de anticoncepción y de prevención, acceso a recursos, y propuestas de herramientas). El análisis narrativo de contenido se realizó con ATLAS-Ti. Resultados: se constituyó un Grupo Motor (GIAP) con 13 miembros. Se realizaron 10 grupos de discusión y tres entrevistas, con 51 inmigrantes de múltiples orígenes y 10 profesionales. La SASR se relaciona con la cultura de origen según la edad, el género, el estado civil, la familia, la religión y la educación recibida. Faltan conocimientos respecto a la anticoncepción y la prevención de infecciones de transmisión sexual y los servicios de atención a la SASR. Se proponen herramientas interactivas que incluyen juegos, dinamizadas por profesionales con competencias culturales. La escuela emergió como un espacio importante para trabajar con esta herramienta. Conclusión: el proceso IAP ha permitido identificar realidades de las mujeres inmigrantes y propuestas concretas para promover la equidad en SASR.(AU)


Objective: to identify real facts about the sexual and reproductive emotional health (SRH) in immigrant women in Barcelona, and their proposals for tools of promotion through a Participatory Action-Research (PAR) process. Method: a qualitative, descriptive-interpretative study, based on PAR, according to the model by Kemmis and McTaggart, and coordinated by a motor group (PARG). The study involved discussion groups and interviews with immigrants and professionals, following a script (SRH concepts, knowledge and experience about contraception and prevention methods, access to resources, and proposals for tools). The narrative content analysis was conducted through ATLAS-Ti. Results: a Motor Group (PARG) was formed with 13 members; 10 discussion groups and three interviews were conducted, with 51 immigrants from multiple origins and 10 professionals. SRH was associated with their culture of origin according to age, gender, marital status, family, religion, and education received. There was lack of knowledge regarding contraception and prevention of sexually-transmitted infections, and about support services for SRH. Interactive tools were suggested, including games, activated by professionals with cultural skills. The school appeared as an important space to work with this tool. Conclusion: the PAR process allowed to identify the realities of immigrant women, as well as specific proposals to promote equity in SRH.(AU)


Subject(s)
Humans , Health Promotion , 50242 , Emigrants and Immigrants , Women , Awareness , Contraception , Women's Health , Communicable Disease Control , 57433 , 25783 , Epidemiology, Descriptive , Focus Groups , Surveys and Questionnaires
3.
Genet Med ; 22(2): 336-344, 2020 02.
Article in English | MEDLINE | ID: mdl-31534211

ABSTRACT

PURPOSE: The ability of a single technology, next-generation sequencing, to provide both sequence and copy number variant (CNV) results has driven the merger of clinical cytogenetics and molecular genetics. Consequently, the distinction between the definition of a sequence variant and a CNV is blurry. As the 2015 American College of Medical Genetics and Genomics/Association for Molecular Pathology (ACMG/AMP) standards and guidelines for interpretation of sequence variants address CNV classification only sparingly, this study focused on adapting ACMG/AMP criteria for single-gene CNV interpretation. METHODS: CNV-specific modifications of the 2015 ACMG/AMP criteria were developed and their utility was independently tested by three diagnostic laboratories. Each laboratory team interpreted the same 12 single-gene CNVs using three systems: (1) without ACMG/AMP guidance, (2) with ACMG/AMP criteria, and (3) with new modifications. A replication study of 12 different CNVs validated the modified criteria. RESULTS: The adapted criteria system presented here showed improved concordance and usability for single-gene CNVs compared with using the ACMG/AMP interpretation guidelines focused on sequence variants. CONCLUSION: These single-gene CNV criteria modifications could be used as a supplement to the ACMG/AMP guidelines for sequence variants, allowing for a streamlined workflow and a step toward a uniform classification system for both sequence and copy number alterations.


Subject(s)
DNA Copy Number Variations/genetics , High-Throughput Nucleotide Sequencing/standards , Sequence Analysis, DNA/classification , Computational Biology/methods , Gene Dosage/genetics , Genetic Testing/methods , Genetic Variation/genetics , Genome, Human/genetics , Genomics/methods , High-Throughput Nucleotide Sequencing/methods , Humans , Laboratories , Mutation/genetics , Sequence Analysis, DNA/methods
5.
Scand J Gastroenterol ; 54(4): 459-464, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30982369

ABSTRACT

Objective: To evaluate the effectiveness and safety of the combination of granulocyte-monocyte apheresis (GMA) after loss of response (LOR) to anti-tumor necrosis factor (TNF) agents in ulcerative colitis (UC). Materials and methods: A retrospective, multicenter study was performed in 11 inflammatory bowel disease (IBD) Units. Clinical remission was defined as a partial Mayo score ≤2. The effectiveness of the treatment was evaluated by the partial Mayo score and the rate of anti-TNF intensification, switch, swap or colectomy. Results: Forty-seven patients with ulcerative colitis were included (mean age 35 years, mean disease duration 52 months, 66% male and 59% extensive colitis). Twenty-three subjects were receiving infliximab, eighteen adalimumab and six golimumab. GMA was combined after a primary non-response (49%) or secondary loss of response (51%) to anti-TNF therapy. We observed a significant decrease in partial Mayo score and fecal calprotectin after GMA. Fifteen patients (32%) responded to the combination therapy without anti-TNF intensification, switch, swap or colectomy. Eight patients (17%) underwent colectomy. Two patients (4%) presented adverse events related to the technique. Conclusions: Combination of GMA and anti-tumor necrosis factor is a safe and effective treatment after the loss of response to these biologic agents, with a significant decrease of the clinical disease activity and biomarkers, in a population with limited therapeutic alternatives.


Subject(s)
Blood Component Removal/methods , Colitis, Ulcerative/therapy , Combined Modality Therapy/methods , Granulocytes/cytology , Monocytes/cytology , Adalimumab/therapeutic use , Adult , Antibodies, Monoclonal/therapeutic use , Female , Humans , Infliximab/therapeutic use , Male , Middle Aged , Retrospective Studies , Treatment Outcome , Tumor Necrosis Factor-alpha/antagonists & inhibitors , Young Adult
6.
Summa psicol. UST ; 16(1): 60-67, 2019. tab
Article in Spanish | LILACS | ID: biblio-1127606

ABSTRACT

Este trabajo aborda la discapacidad en el contexto universitario, desde la adecuación a las necesidades y características de la persona. Esta mirada busca que quienes presenten necesidades especiales asociadas a la discapacidad, dispongan de los medios, apoyos y recursos suficientes para asegurar la igualdad real y efectiva de oportunidades dentro de la comunidad universitaria. De acuerdo con ese objetivo, con este artículo se pretende generar una reflexión en el docente universitario, sobre las cuestiones de accesibilidad y adaptación -como aspectos básicos- en la atención a su alumnado con discapacidad. Estos aspectos se relacionan con la búsqueda de desarrollo tecnológico, formativo y personal-social, propio de una Universidad abierta a la sociedad, apuntando hacia valores de normalización, integración e inclusión. En una primera parte, se tratan generalidades sobre el desarrollo tecnológico y usuarios con discapacidad, para pasar a una segunda en la que se abordan cuestiones de la accesibilidad y la discapacidad, continuando con su concreción en el currículum universitario del alumnado con discapacidad.


This work addresses disability in the higher education context, in terms of reasonable and achievable adjustments related to the individual's needs and features. This approach aims to ensure assistive technology, support, and resources as means to guarantee real and effective access to equal opportunities for those members that may present special needs, due to their disability situation, within the university community. Therefore, this paper attempts to generate a reflection for university lecturers about accessibility and adaptation, as basic aspects in their duty of supporting disabled students. These aspects are directly related to technological, educational and socio-personal development, present in those higher education institutions open to society and oriented to values such as integration and inclusion. In the first place, some general information is provided about technological development and users with disabilities. In the second place, certain aspects related to accessibility and disability are addressed, and their materialization in the university curriculum of disabled students.


Subject(s)
Humans , Teaching , Universities , Disabled Persons , Architectural Accessibility , Mainstreaming, Education , Educational Technology , Adaptation to Disasters , Curriculum
7.
Summa psicol. UST ; 13(2): 33-44, 2016. tab
Article in Spanish | LILACS | ID: biblio-1178226

ABSTRACT

Los niños y niñas con capacidad intelectual límite presentan unas necesidades específicas de apoyo educativo. Estas están centradas en el desarrollo de la memoria de trabajo con sus asociaciones a lo perceptivo-atencional y al lenguaje, así como en la mejora de los aprendizajes lectoescritor y de razonamiento matemático, debiendo ser reforzado su pensamiento estratégico. En este artículo, se hace un primer acercamiento conceptual y definitorio de la capacidad intelectual límite, situándolo en un ámbito psicopedagógico, estableciendo de forma general sus posibles dificultades de aprendizaje. En una segunda parte, se determinan las necesidades específicas que este alumnado plantea, haciéndose algunas consideraciones sobre la evaluación psicopedagógica las cuales se encuentran fundamentadas en el conocimiento del caso (alumno y contextos), mediante una propuesta de adecuación a ese alumno y con objetivos de compensación y favorecimiento del desarrollo de sus capacidades. Por último, de acuerdo al análisis de la revisión teórica, se concluye que la intervención psicopedagógica en el alumnado con capacidad intelectual límite debe realizarse desde un análisis profundo y riguroso de sus características personales y de contexto. De este modo, los resultados de la evaluación psicopedagógica se convierten en necesidades específicas de apoyo educativo. Todo ello en un ámbito de inclusión social y educativa y desde criterios de normalización.


Children with borderline intellectual functioning present specific needs of educational support. These are focused on the development of work memory associated with perception, attention and language, as well as the improvement of reading and writing skills and mathematic reasoning, enhancing strategic thinking. This paper attempts to provide a general conceptual framework about borderline intellectual functioning, from an educational psychology approach, establishing thus possible learning difficulties from a general perspective. Moreover, the specific needs experienced by these students are determined, taking into account some considerations about psychoeducational assessment that are based on case study (student and contexts), through an educational proposal for this student, which includes compensation objectives and strengthening of their capacities. Finally, according to the literature review, it is concluded that psychoeducational intervention on students with borderline intellectual functioning, must be carried out from a thorough analysis of their personal and contextual characteristics. In this way, the results of psychoeducational assessment become specific needs of educational support, in a framework of socio-educational inclusion and standardization criteria.


Subject(s)
Humans , Male , Female , Psychology, Educational/methods , Needs Assessment , Learning Disabilities/psychology , Intellectual Disability , Child Development , Cognition Disorders/etiology
8.
PLoS Comput Biol ; 9(1): e1002883, 2013.
Article in English | MEDLINE | ID: mdl-23358700

ABSTRACT

We computationally determined miRs that are significantly connected to molecular pathways by utilizing gene expression profiles in different cancer types such as glioblastomas, ovarian and breast cancers. Specifically, we assumed that the knowledge of physical interactions between miRs and genes indicated subsets of important miRs (IM) that significantly contributed to the regression of pathway-specific enrichment scores. Despite the different nature of the considered cancer types, we found strongly overlapping sets of IMs. Furthermore, IMs that were important for many pathways were enriched with literature-curated cancer and differentially expressed miRs. Such sets of IMs also coincided well with clusters of miRs that were experimentally indicated in numerous other cancer types. In particular, we focused on an overlapping set of 99 overall important miRs (OIM) that were found in glioblastomas, ovarian and breast cancers simultaneously. Notably, we observed that interactions between OIMs and leading edge genes of differentially expressed pathways were characterized by considerable changes in their expression correlations. Such gains/losses of miR and gene expression correlation indicated miR/gene pairs that may play a causal role in the underlying cancers.


Subject(s)
MicroRNAs/metabolism , Neoplasms/genetics , Humans , Neoplasms/classification
9.
Nucleic Acids Res ; 40(17): 8219-26, 2012 Sep 01.
Article in English | MEDLINE | ID: mdl-22743268

ABSTRACT

Collecting representative sets of cancer microRNAs (miRs) from the literature we show that their corresponding families are enriched in sets of highly interacting miR families. Targeting cancer genes on a statistically significant level, such cancer miR families strongly intervene with signaling pathways that harbor numerous cancer genes. Clustering miR family-specific profiles of pathway intervention, we found that different miR families share similar interaction patterns. Resembling corresponding patterns of cancer miRs families, such interaction patterns may indicate a miR family's potential role in cancer. As we find that the number of targeted cancer genes is a naïve proxy for a cancer miR family, we design a simple method to predict candidate miR families based on gene-specific interaction profiles. Assessing the impact of miR families to distinguish between (non-)cancer genes, we predict a set of 84 potential candidate families, including 75% of initially collected cancer miR families. Further confirming their relevance, predicted cancer miR families are significantly indicated in increasing, non-random numbers of tumor types.


Subject(s)
MicroRNAs/metabolism , Neoplasms/genetics , Gene Expression Regulation, Neoplastic , Genes, Neoplasm , Humans , MicroRNAs/classification , MicroRNAs/physiology , Neoplasms/metabolism , Protein Interaction Mapping , RNA, Messenger/metabolism , Signal Transduction/genetics
10.
PLoS One ; 6(2): e14681, 2011 Feb 16.
Article in English | MEDLINE | ID: mdl-21358821

ABSTRACT

Despite progress in the determination of miR interactions, their regulatory role in cancer is only beginning to be unraveled. Utilizing gene expression data from 27 glioblastoma samples we found that the mere knowledge of physical interactions between specific mRNAs and miRs can be used to determine associated regulatory interactions, allowing us to identify 626 associated interactions, involving 128 miRs that putatively modulate the expression of 246 mRNAs. Experimentally determining the expression of miRs, we found an over-representation of over(under)-expressed miRs with various predicted mRNA target sequences. Such significantly associated miRs that putatively bind over-expressed genes strongly tend to have binding sites nearby the 3'UTR of the corresponding mRNAs, suggesting that the presence of the miRs near the translation stop site may be a factor in their regulatory ability. Our analysis predicted a significant association between miR-128 and the protein kinase WEE1, which we subsequently validated experimentally by showing that the over-expression of the naturally under-expressed miR-128 in glioma cells resulted in the inhibition of WEE1 in glioblastoma cells.


Subject(s)
Brain Neoplasms/genetics , Gene Expression Regulation, Neoplastic , Glioma/genetics , MicroRNAs/physiology , Brain Neoplasms/pathology , Cell Cycle Proteins/genetics , Cells, Cultured , Cluster Analysis , Computational Biology , Forecasting/methods , Gene Expression Profiling , Gene Regulatory Networks , Glioma/pathology , Humans , MicroRNAs/genetics , Microarray Analysis , Nuclear Proteins/genetics , Protein-Tyrosine Kinases/genetics , Transfection , Up-Regulation , Validation Studies as Topic
11.
Cancer Genet Cytogenet ; 173(1): 63-7, 2007 Feb.
Article in English | MEDLINE | ID: mdl-17284372

ABSTRACT

Clinical response to Gefitinib (Iressa, ZD1839) has been found to be associated with somatic mutations, primarily of exons 18-21, of the epidermal growth factor receptor gene (EGFR) in non-small cell lung cancer (NSCLC). Evidence of a positive response was also reported recently on a patient with brain metastasis from NSCLC. On the other hand, amplification of EGFR appears to be associated with a poor prognosis. To determine whether EGFR mutations and amplification are involved in the tumorigenesis of brain metastases, we performed polymerase chain reaction/single-strand conformation polymorphism to examine exons 1, 2, and 7-26 of EGFR in a series of 18 brain metastases. The metastases derived from malignant melanoma (three cases), lung carcinoma (six cases), breast carcinoma (three cases), ovarian carcinoma (two cases), and one each from colon, kidney, bladder, and undifferentiated carcinoma. In addition to several sequence polymorphisms, we identified two mutations on E19 consisting of 18-base pair (bp) deletions: 2423-24440del and 2426-2443del. These mutations presented in lesions derived from kidney carcinoma and lung adenocarcinoma. By real-time quantitaive polymerase chain reaction technique, we determined the amplification/overdose status of EGFR by analyzing exons 11 and 25. Amplification (5- to 100-fold) was identified in three tumors, and overdose (low-level gene amplification corresponding to increases of 1- to 5-fold) presented in four additional metastases. These findings suggest that EGFR mutations and polymorphisms are not exclusively present in metastases derived from lung carcinoma. Accordingly, targeting of EGFR to determine molecular alterations of this gene may be useful in the management of patients with brain metastases.


Subject(s)
Brain Neoplasms/secondary , ErbB Receptors/genetics , Mutation , Neoplasms/pathology , Polymerase Chain Reaction/methods , Adult , Aged , Amino Acid Sequence , Base Sequence , Brain Neoplasms/genetics , DNA Mutational Analysis , DNA, Neoplasm/chemistry , DNA, Neoplasm/genetics , Female , Gene Dosage , Humans , Male , Middle Aged , Mutagenesis, Insertional , Neoplasms/genetics , Polymorphism, Genetic , Polymorphism, Single-Stranded Conformational , Sequence Deletion
12.
Curr Mol Med ; 6(6): 645-50, 2006 Sep.
Article in English | MEDLINE | ID: mdl-17022734

ABSTRACT

Astrocytomas represent the most common form of glial tumors. The most malignant grade of these tumors, glioblastoma multiforme, may arise as a malignant progression from low-grade astrocytoma through anaplastic astrocytoma to secondary GBM, or else it may arise "de novo" as primary GBM. Both types of glioblastoma are usually histologically indistinguishable. However, distinct molecular alterations have been described between them that potentially allow differentiation between the two mechanisms of origin. Since malignant transformation is a multistep process, we summarize in this review the earliest genetic changes that seem to be involved in the appearance and development of low-grade astrocytic tumors, where early detection and treatment could be possible.


Subject(s)
Astrocytoma/genetics , Brain Neoplasms/genetics , Glioblastoma/genetics , Models, Genetic , Tumor Suppressor Proteins/genetics , Cell Transformation, Neoplastic , Chromosomes, Human, Pair 17 , Gene Amplification , Humans , Mutation , Stem Cells/pathology
13.
Cancer Genet Cytogenet ; 164(1): 39-43, 2006 Jan 01.
Article in English | MEDLINE | ID: mdl-16364761

ABSTRACT

We have studied EGFR gene amplification and allelic status of chromosome 7 in 68 tumors consisting of 34 WHO grade IV glioblastomas (26 primary and 8 secondary), 14 WHO grade III anaplastic astrocytomas, and 20 WHO grade II astrocytomas, by polymerase chain reaction-single-strand conformation polymorphism (PCR-SSCP), quantitative PCR, and microsatellite analysis. EGFR gene amplification was present in 27 of these tumors (40%), and we identified allelic losses at 7p11 approximately p14 in 38 of the 68 cases (56%), including 17 tumors displaying loss for EGFR intragenic markers. The positive correlation (P < 0.05, chi(2)) between tumors with EGFR intragenic loss and EGFR gene amplification, frequently displaying the EGFR vIII form, suggests that EGFR gene rearrangement leading to intragenic loss is a molecular event that participates in the amplification process of this gene.


Subject(s)
Astrocytoma/genetics , Gene Amplification , Genes, erbB-1 , Loss of Heterozygosity , Humans
14.
Diagn Mol Pathol ; 14(4): 224-9, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16319692

ABSTRACT

We have studied gene amplification of genes located in 1q32 (GAC1, ELF3, MDM4, and ren1), 4q11 (PDGFR-alpha), and in 12q13-14 (MDM2 and CDK4) using quantitative real-time PCR in a group of 86 tumors consisting of 44 WHO grade IV glioblastomas (GBM) (34 primary and 10 secondary tumors), 21 WHO grade III anaplastic astrocytomas (AA), and 21 WHO grade II astrocytomas (AII). Gene amplification was present in 56 of the 86 samples (65%) in at least 1 gene in our series. GAC1 (51%) and MDM4 (27%) were the most frequently amplified genes within the 1q32 amplicon, and their higher amplification frequency was statistically significant (P<0.05, chi) in the low-grade astrocytomas. Concordant co-amplification was determined for ELF3 and ren1 or ren1 and MDM4 in the grade III-IV tumors. MDM2 amplification was significantly more frequent in primary GBM (16%) than was in secondary GBM (0%). The present study shows that gene amplification in the studied regions is already present in low-grade astrocytic tumors and that amplification of some genes may represent another molecular marker to differentiate primary from secondary GBM.


Subject(s)
Astrocytoma/genetics , Gene Amplification , Gene Dosage , Proto-Oncogenes/genetics , Biomarkers, Tumor/analysis , Humans , Polymerase Chain Reaction
15.
Am J Clin Pathol ; 123(6): 900-6, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15899783

ABSTRACT

Proto-oncogene amplification is an important alteration that is present in about 45% to 50% of high-grade human gliomas. We studied this mechanism in 8 genes (cyclin-dependent kinase-4 [CDK4], MDM2, MDM4, renin-angiotensin system-1, ELF3, GAC1, human epidermal growth factor receptor-2, and platelet-derived growth factor receptor-A gene) in a series of 40 oligodendrogliomas (World Health Organization (WHO) grade II, 21; WHO grade III, 13; and WHO grade II-III oligoastrocytomas, 6) using real-time quantitative polymerase chain reaction. Amplification of at least 1 of these genes was detected in 58% of samples (23/40). By histopathologic grade, 67% of grade II oligodendrogliomas (14/21), 46% of grade III anaplastic oligodendrogliomas (6/13), and 50% of mixed oligoastrocytomas (3/6) were positive for amplification of at least 1 gene. CDK4, MDM2, and GAC1 were the most frequently involved genes (12/40 [30%], 12/40 [30%], and 13/40 [33%], respectively). Our findings demonstrate gene amplification in low-grade samples indicating that it is an important alteration in the early steps of oligodendroglioma development and, therefore, might be considered a molecular mechanism leading to malignant progression toward anaplastic forms.


Subject(s)
Brain Neoplasms/genetics , Gene Amplification , Gene Dosage , Oligodendroglioma/genetics , Proto-Oncogenes/genetics , Reverse Transcriptase Polymerase Chain Reaction , Biomarkers, Tumor/analysis , Humans , Proto-Oncogene Mas
16.
Oncol Rep ; 13(3): 539-42, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15711769

ABSTRACT

Loss of 1p heterozygosity is one of the most characteristic events in oligodendrogliomas. Several genes located in this region have been previously studied to find the target gene implicated in the development of this tumor without success. Patched-2, RIZ1 and KIF1B are novel oncosuppressor genes located at 1p and involved in different kinds of tumors. We have studied these genes and p18(ink4c) using PCR/SSCP methods to detect sequence variations in a series of 40 oligodendrogliomas in which the allelic status at 1p was analyzed. Polymorphisms or no sequence changes were detected in all four genes analyzed. None of the genes analyzed seem to be the target-gene mapped at 1p involved by mutation in oligodendroglioma development.


Subject(s)
Brain Neoplasms/genetics , Cell Cycle Proteins/genetics , DNA-Binding Proteins/genetics , Kinesins/genetics , Membrane Proteins/genetics , Nerve Tissue Proteins/genetics , Nuclear Proteins/genetics , Oligodendroglioma/genetics , Polymorphism, Genetic , Retinoblastoma Protein/genetics , Transcription Factors/genetics , Tumor Suppressor Proteins/genetics , Brain Neoplasms/physiopathology , Cell Transformation, Neoplastic , Cyclin-Dependent Kinase Inhibitor p18 , DNA Mutational Analysis , Histone-Lysine N-Methyltransferase , Humans , Loss of Heterozygosity , Oligodendroglioma/physiopathology , Patched Receptors , Patched-2 Receptor , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational , Protein Kinase Inhibitors , Receptors, Cell Surface
17.
Genes Chromosomes Cancer ; 42(3): 314-9, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15609345

ABSTRACT

The role of the NF2 gene in the development of meningiomas has recently been documented; inactivating mutations plus allelic loss at 22q, the site of this gene (at 22q12), have been identified in both sporadic and neurofibromatosis type 2-associated tumors. Although epigenetic inactivation through aberrant CpG island methylation of the NF2 5' flanking region has been documented in schwannoma (another NF2-associated neoplasm), data on participation of this epigenetic modification in meningiomas are not yet widely available. Using methylation-specific PCR (MSP) plus sequencing, we assessed the presence of aberrant promoter NF2 methylation in a series of 88 meningiomas (61 grade I, 24 grade II, and 3 grade III), in which the allelic constitution at 22q and the NF2 mutational status also were determined by RFLP/microsatellite and PCR-SSCP analyses. Chromosome 22 allelic loss, NF2 gene mutation, and aberrant NF2 promoter methylation were detected in 49%, 24%, and 26% of cases, respectively. Aberrant NF2 methylation with loss of heterozygosity (LOH) at 22q was found in five cases, and aberrant methylation with NF2 mutation in another; LOH 22q and the mutation were found in 16 samples. The aberrant methylation of the NF2 gene also was the sole alteration in 15 samples, most of which were from grade I tumors. These results indicate that aberrant NF2 hypermethylation may participate in the development of a significant proportion of sporadic meningiomas, primarily those of grade I.


Subject(s)
Chromosome Aberrations , Chromosomes, Human, Pair 22 , Genes, Neurofibromatosis 2/physiology , Meningeal Neoplasms/genetics , Meningioma/genetics , CpG Islands , DNA Methylation , Humans , Loss of Heterozygosity , Microsatellite Repeats , Mutation , Polymorphism, Single-Stranded Conformational , Promoter Regions, Genetic/genetics
18.
Int J Oncol ; 25(5): 1489-94, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15492843

ABSTRACT

Primarily involved in cell proliferation and differentiation processes, the plasma membrane-bound ErbB tyrosine kinase receptor family is formed by four members: erbB1/EGFR, erbB2/HER2/Neu, erbB3/HER3 and erbB4/HER4. Calmodulin (CaM) is a Ca2+-binding protein involved in the regulation of multiple intracellular processes that binds directly to EGFR in the presence of Ca2+, inhibiting its tyrosine kinase activity. Two main regions in the receptor have been implicated in this relationship: the calmodulin-binding domain (CaM-BD) and the calmodulin-like domain (CaM-LD); their sequences are highly conserved in other members of this family of receptors. The presence of mutations, amplification and/or overexpression and genomic rearrangement of these domains was investigated for all four erbB family genes in a series of 89 glial tumors, including 44 WHO grade IV glioblastomas, 21 WHO grade III anaplastic astrocytomas, and 24 WHO grade II astrocytomas. Gene alterations were only found in the regions of interest in EGFR. One glioblastoma showed an in frame tandem duplication of the intracellular region including CaM-LD (exons 18-25). CaM-BD gene overdose was evidenced in 18 tumors that showed EGFR amplification in other domains. Over-expression of CaM-BD and CaM-LD was detected in 6 and 17 cases, respectively, of the 19 tumors in which this study was performed. The other three genes coding for the ErbB receptors did not present point mutations, or rearrangements, and only a very low amplification rate was found for erbB2 (1 case) and erbB3 (4 cases). No overexpression of erbB2, erbB3 or erbB4 was detected. These findings suggest that EGFR is the main erbB gene family member non-randomly involved in malignant glioma development, and that the two domains under study, due to their high conservation and wide separation in the EGFR sequence, are good marker regions for evaluating EGFR/erbB1 gene amplification, as well as for analysing the presence of transcripts corresponding to truncated cytosolic forms of the receptor in these tumors.


Subject(s)
Astrocytoma/genetics , Brain Neoplasms/genetics , Calmodulin-Binding Proteins/genetics , Gene Amplification , Genes, erbB/genetics , Glioblastoma/genetics , Astrocytoma/pathology , Biopsy , Brain Neoplasms/pathology , Calmodulin-Binding Proteins/pharmacology , Cell Transformation, Neoplastic , DNA Mutational Analysis , Gene Rearrangement , Glioblastoma/pathology , Humans
19.
Acta Neuropathol ; 108(5): 413-21, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15365725

ABSTRACT

The purpose of this research was to examine the DNA methylation profile of meningiomas. Accordingly, we examined the DNA methylation status of ten tumor-related genes (RB1, p16(INK4a), p73, MGMT, ER, DAPK, TIMP-3, p14(ARF), THBS1, and Caspase-8) in 98 meningiomas (68 grade I; 27 grade II; and 3 grade III samples) using methylation-specific PCR and sequencing. The most frequently methylated genes were THBS1 (30%), TIMP-3 (24%), p16(INK4a) (17%), MGMT (16%), p73 (15%), ER (15%), and p14(ARF) (13%), whereas methylation was relatively rare in the other genes (<10%). Methylation occurred in at least one gene in 77.5% of the cases and in three or more genes in 25.5%. Methylation was tumor specific since it was absent in the controls: two non-neoplastic meningeal samples and two non-neoplastic brain samples. The frequency of aberrant gene methylation in grade I versus grade II-III tumors showed some differences for TIMP-3, THBS1, MGMT, p16(INK4a) and p73; these differences reached statistical significance for TIMP-3: 18% in grade I versus 40% in grade II-III (P < 0.02). Our previous loss of heterozygosity studies provided the allelic constitution at 1p and 22q for 60 of the 98 meningiomas included in this report. The level of aberrant promoter methylation increased in tumors (30 samples) displaying 1p loss (either isolated or as concurrent deletion at 1p/22q; P = 0.014). These meningiomas primarily accumulated the epigenetic changes of THBS1 (14/30; 47%; P < 0.005), TIMP-3 (12/30; 40%; P < 0.05), p73 (10/30; 26%; P < 0.02) and p14(ARF) /p16(INK4a)(7/30 each one; 23%; not significant). Our findings indicate that aberrant DNA methylation of promoter-associated CpG islands in meningiomas contributes to the development of these tumors.


Subject(s)
CpG Islands/genetics , DNA Methylation , DNA, Neoplasm/genetics , Meningeal Neoplasms/genetics , Meningioma/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Alleles , Female , Humans , Loss of Heterozygosity , Male , Middle Aged , Polymerase Chain Reaction , Promoter Regions, Genetic
20.
Mutat Res ; 554(1-2): 23-32, 2004 Oct 04.
Article in English | MEDLINE | ID: mdl-15450401

ABSTRACT

O6-methylguanine-DNA methyltransferase (MGMT) plays a major role in repairing DNA damage from alkylating agents. By removing alkyl groups from the O6-position in guanine, MGMT can prevent G:C to A:T transition mutations, a type of variation frequently involving TP53 mutations in brain tumors. Promoter hypermethylation of CpG islands in tumor-related genes can lead to their transcriptional inactivation, and this epigenetic mechanism has been shown to participate in MGMT silencing in some cancers, including those affecting the nervous system. Accordingly, a link between both genetic and epigenetic anomalies may exist in these neoplasms. To determine the relevance of defective MGMT function due to aberrant methylation in relation to the presence of TP53 mutations, we studied 469 nervous system tumors (including all major histological subtypes) for MGMT promoter methylation and TP53 mutations at exons 5-8. Overall, aberrant methylation occurred in 38% of the samples (180/469), with values higher than 50% in the more malignant forms such as glioblastomas and anaplastic gliomas including those with astrocytic, oligodendroglial and ependymal differentiation. In contrast, the non-glial tumors displayed an overall aberrant MGMT promoter methylation of 26%, even though this group includes highly malignant tumors such as neuroblastomas, medulloblastomas and brain metastases. Overall, TP53 mutations were found in 25% of the methylated MGMT tumors (45/180), whereas only 10% of the unmethylated MGMT tumors (30/289) showed TP53 changes (P < 0.001). G:C to A:T changes occurred at CpG sites in 9% of methylated tumors, and in 0.7% of the unmethylated samples. This type of transition at non-CpG dinucleotides was also more frequent in the tumors with aberrant MGMT methylation (5%) than the unmethylated tumors (0.7%). These data suggest that MGMT silencing as a result of promoter hypermethylation may lead to G:C to A:T transition mutations in the TP53 gene of some histological nervous system tumor subtypes.


Subject(s)
DNA Methylation , DNA Repair/genetics , Genes, p53 , Nervous System Neoplasms/genetics , O(6)-Methylguanine-DNA Methyltransferase/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Base Sequence , Child , Child, Preschool , DNA Primers , Female , Humans , Infant , Infant, Newborn , Male , Middle Aged , Mutation , Polymerase Chain Reaction , Polymorphism, Single-Stranded Conformational
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