U.S. cereal rye winter cover crop growth database.

Winter cover crop performance metrics (i.e., vegetative biomass quantity and quality) affect ecosystem services provisions, but they vary widely due to differences in agronomic practices, soil properties, and climate. Cereal rye (Secale cereale) is the most common winter cover crop in the United States due to its winter hardiness, low seed cost, and high biomass production. We compiled data on cereal rye winter cover crop performance metrics, agronomic practices, and soil properties across the eastern half of the United States. The dataset includes a total of 5,695 cereal rye biomass observations across 208 site-years between 2001-2022 and encompasses a wide range of agronomic, soils, and climate conditions. Cereal rye biomass values had a mean of 3,428 kg ha-1, a median of 2,458 kg ha-1, and a standard deviation of 3,163 kg ha-1. The data can be used for empirical analyses, to calibrate, validate, and evaluate process-based models, and to develop decision support tools for management and policy decisions.

Sustainability of cover cropping practice with changing climate in Illinois.

Climate change could adversely impact the best management practices (BMPs) designed to build a sustainable agro-ecological environment. Cover cropping is a conservation practice capable of reducing nitrate-nitrogen (NO3-N) loadings by consuming water and nitrate from the soil. The objective of this study was to investigate how climate change would impact the proven water quality benefits of cereal rye as a winter cover crop (CC) over the climate divisions of Illinois using the DSSAT model. Moreover, this study explores the sustainability of the CC with the changing climate conditions by using five regional climate models (RCMs) projections of two warming scenarios-rcp45 (a medium emission scenario - radiative forcing of 4.5 W/m2) and rcp85 (a high emission scenario - radiative forcing of 8.5 W/m2)). The CC impact simulated in the warming scenarios for the near-term (2021-2040) and the far-term future (2041-2060) were compared with the baseline scenario (2001-2020). Our results conclude that the climate change may negatively impact [average of CC and no CC (NCC)] maize yield (-6.6%) while positively affecting soybean yield (17.6%) and CC biomass (73.0%) by the mid-century. Increased mineralization caused by rising temperature could increase the nitrate loss via tile flow (NLoss) and nitrate leached (NLeached) up to 26.3% and 7.6% on average by the mid-century in Illinois. Increasing CC biomass could reduce the NLoss more considerably in all the scenarios compared to the baselines. Nevertheless, the NLoss level in the CC treatment can increase from the near-term to far-term future and could get closer to the baseline levels in the NCC treatment. These results suggest that CC alone may not address nitrate loss goals via subsurface drainage (caused by increasing N mineralization) in future. Therefore, more robust and cost-effective BMPs are needed to aid the CC benefits in preventing nutrient loss from the agricultural fields.

Evaluation of long-term impact of cereal rye as a winter cover crop in Illinois.

Extensive tile drainage usage combined with excess nitrogen fertilization has triggered nutrient loss and water quality issues in Illinois, which over time endorsed the hypoxia formation in the Gulf of Mexico. Past research reported that the use of cereal rye as a winter cover crop (CC) could be beneficial in reducing nutrient loss and improving water quality. The extensive use of CC may aid in reducing the hypoxic zone in the Gulf of Mexico. The objective of this study is to analyze the long-term impact of cereal rye on soil water­nitrogen (N) dynamics and cash crops growth in the maize-soybean agroecosystem in the state of Illinois. A gridded simulation approach was developed using the DSSAT model for the CC impact analysis. The CC impacts were estimated for the last two decades (2001-2020) for two fertilization scheduling (FA-SD = Fall and side-dress N and SP-SD = Spring pre-plant and side-dress N) comparing between CC scenario (FA-SD-C/SP-SD-C) with no CC (NCC) scenario (FA-SD-N/SP-SD-N). Our results suggest that the nitrate-N loss (via tile flow) and leaching reduced by 30.6 % and 29.4 %, assuming extensive adaptation of cover crop. The tile flow and deep percolation decreased by 20.8 % and 5.3 %, respectively, due to cereal rye inclusion. The model performance was relatively poor in simulating the CC impact on soil water dynamics in the hilly topography of southern Illinois. Generalizing changes in the soil properties (due to cereal rye inclusion) from the field scale to whole state (regardless of soil type) could be one of the possible limitations in this research. Overall, these findings substantiated the long-term benefits of cereal rye as a winter cover crop and found the spring N fertilizer application reduced nitrate-N loss compared to fall N application. These results could be helpful in promoting the practice in the Upper Mississippi River basin.

Phosphorus sorption and desorption as affected by long-term cover cropping at two soil surface depths.

Phosphorus (P) loss from agricultural land is a persistent environmental challenge, and a better understanding of the impact of continuous cover crops (CCs) growth on soil P sorption and desorption characteristics is needed to inform mitigation strategies. This study investigated the impact of CC species on soil P pools, sorption characteristics, and dissolved reactive P (DRP) after 9 yr. Soil samples were collected at 0-to-2- and 2-to-4-cm soil depths from a silty clay loam Mollisol. Treatments included cereal rye (Secale cereal L.; CR), annual ryegrass (Lolium multiflorum, AR), oats/radish (Avena sativa L./Raphanus sativus L.; OR), and no CC (CN). A sorption experiment was done with varying P concentrations for 24 h equilibration, and sorption parameters were estimated using the Langmuir model. The DRP was estimated using sequential soil extraction by 0.01 M CaCl2 for 5 h. Long-term CC significantly decreased P sorption maximum but increased binding energy relative to CN. Annual ryegrass significantly decreased soil water extractable P, Mehlich 3 P, and degree of P saturation relative to OR and CN at the 0-to-2-cm depth. Annual ryegrass and CR significantly decreased desorbed DRP by an average of 42 and 45% relative to CN and OR, respectively, at the 0-to-2-cm depth. These results demonstrated that long-term grass species decreased the concentrations of labile P pools and desorbed DRP at the soil runoff interaction zone. Therefore, planting of AR and CR should be promoted in fields susceptible to runoff DRP losses.

ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis.

The internally transcribed spacer (ITS) region between the small subunit ribosomal RNA gene and large subunit ribosomal RNA gene is a widely used phylogenetic marker for fungi and other taxa. The eukaryotic ITS contains the conserved 5.8S rRNA and is divided into the ITS1 and ITS2 hypervariable regions. These regions are variable in length and are amplified using primers complementary to the conserved regions of their flanking genes. Previous work has shown that removing the conserved regions results in more accurate taxonomic classification. An existing software program, ITSx, is capable of trimming FASTA sequences by matching hidden Markov model profiles to the ends of the conserved genes using the software suite HMMER. ITSxpress was developed to extend this technique from marker gene studies using Operational Taxonomic Units (OTU's) to studies using exact sequence variants; a method used by the software packages Dada2, Deblur, QIIME 2, and Unoise. The sequence variant approach uses the quality scores of each read to identify sequences that are statistically likely to represent real sequences. ITSxpress enables this by processing FASTQ rather than FASTA files. The software also speeds up the trimming of reads by a factor of 14-23 times on a 4-core computer by temporarily clustering highly similar sequences that are common in amplicon data and utilizing optimized parameters for Hmmsearch. ITSxpress is available as a QIIME 2 plugin and a stand-alone application installable from the Python package index, Bioconda, and Github.

Subsurface Band Application of Poultry Litter and Its Influence on Phosphorus Concentration and Retention after Runoff from Permanent Pastures.

Excessive phosphorus (P) loss from agricultural fields is a major cause of eutrophication to rivers, lakes, and streams. To mitigate P loss after poultry litter (PL) applications, technology is being developed to apply litter below the soil surface. Thus, research was conducted to evaluate the effects of subsurface PL banding on soil P under pasture management. Treatments consisted of surface-broadcasted or subsurface-banded PL (38 cm apart) at 9 Mg ha, surface-broadcasted commercial fertilizer (CF; urea and triple superphosphate blend) at N (330 kg N ha) and P (315 kg N ha) application rates equivalent to PL, and a nonfertilized control. Runoff events lasting 40 min were simulated in bermudagrass ( L.) pastures on common soil types of the Coastal Plain and Piedmont regions. One day later, Mehlich-1 and water-soluble P concentrations in soil were measured at depths of 0 to 5 cm and 5 to 10 cm to determine P distribution and movement. The greatest P concentrations were observed at the shallow depth for all treatments. Phosphorus measurements at the point of application for PL bands were greater than for the surface-applied treatments (PL and CF) and control. Measurements between subsurface PL bands were slightly higher than the control but were statistically similar, suggesting that this application method can abate short-term P movement. Results obtained from this study show that subsurface band applying PL could increase P retention and reduce movement by precluding contact between surface water and litter nutrients.

The development of alum rates to enhance the remediation of phosphorus in fluvial systems following manure spills.

Following the remediation of animal manure spills that reach surface waters, contaminated streambed sediments are often left in place and become a source for internal phosphorus (P) loading within the stream in subsequent flow. The objective of this study was to develop treatment rates and combinations of alum and CaCO(3) to mitigate P from contaminated sediments of different particle size distributions following a manure spill. Sediment specific alum and CaCO(3) treatment rates were developed based upon the resultant alum treatment ranges established for each sediment type. Clay loam sediments required 54% more alum to mitigate P desorption relative to sediments that contain at least 60% sand. Amending sediments with the highest rates of alum/alum + CaCO(3), resulted in a 98-100% reduction in P desorption and a similar water column pH for all sediments types. Observations from this study demonstrated the effectiveness of alum/alum + CaCO(3) to increase P retention in sediments following a manure spill.

Transport and fate of phosphorus during and after manure spill simulations.

Animal manure spills contribute to P loading of surface waters and little is known about the effectiveness of the current manure spill clean-up methods to mitigate P contamination. Manure spill clean-up consists of containing, removing, and land applying the contaminated water column, while P-enriched fluvial sediments remain in place. Therefore, the objectives of this study were to (i) understand how P partitions between the water column and fluvial sediments during a manure spill, and (ii) evaluate the efficacy of current manure spill clean-up methods to remediate manure contaminated sediments. Manure spill simulations were conducted using fluvarium techniques and sediments collected from three drainage areas of two drainage ditches. Sediments with the greatest clay content (33%) resulted in a significantly greater P buffering capacity (10.3 L kg(-1)) and removed P from the water column at the greatest rate during the manure spill simulation relative to sediments with < 6% clay. Phosphorus uptake length for all sediments ranged from 574 to 815 m and the adsorption flux ranged from 8.9 to 16.7 mg m(-2) h(-1). After simulating the current manure spill remediation methods, P desorbed to the water from all sediments exceeded the Environmental Protection Agency total P criteria (0.076 mg L(-1)) for the region by at least 67%. Furthermore, results from this study suggest that the current manure spill remediation method needs refining to mitigate P from the total fluvial system water column and sediment following a spill.