Surface potential of phosphoinositide membranes: comparison between theory and experiment.

Surface potential of lipid membranes made of phosphatidylcholine (PC) and one of the phosphoinositides (PPI); PI, PIP or PIP(2), was studied by using the electrophoretic mobility of these lipid membrane vesicles, and a theoretical model of the surface potential developed for these membranes containing PPIs. By using the measured zeta-potential for the PI/PC membranes and a well-known surface potential theory, the inositol ring of the PI molecule was found to extend into the aqueous phase approximately normal to the membrane surface for various PI/PC ratios investigated. The outer edge of the inositol ring is located at about 5.2A from the phosphate group conjugated with the glycerol of the phospholipids. The inositol group was slightly tilted from the membrane normal direction. For both PIP/PC and PIP(2)/PC membranes, the analyses of surface potential using the measured zeta-potential values and the surface potential theory which was developed for these membranes gave consistent results with respect to the slipping layer distance from the second surface charge layer. The conclusion is that the experimental data can be fairly well resolved by using a linearized Poisson-Boltzmann surface potential equation set up for a PPI/PC membrane model up to a certain concentration of PPI in PC membranes. Our theoretical model made for these membrane surface potentials seems to be reasonable for analysis of electrical surface phenomena for these PPI/PC membranes containing small concentrations of PPI molecules.

Mesoscale variations in acoustic signals induced by atmospheric gravity waves.

The results of acoustic tomographic monitoring of the coherent structures in the lower atmosphere and the effects of these structures on acoustic signal parameters are analyzed in the present study. From the measurements of acoustic travel time fluctuations (periods 1 min-1 h) with distant receivers, the temporal fluctuations of the effective sound speed and wind speed are retrieved along different ray paths connecting an acoustic pulse source and several receivers. By using a coherence analysis of the fluctuations near spatially distanced ray turning points, the internal wave-associated fluctuations are filtered and their spatial characteristics (coherences, horizontal phase velocities, and spatial scales) are estimated. The capability of acoustic tomography in estimating wind shear near ground is shown. A possible mechanism describing the temporal modulation of the near-ground wind field by ducted internal waves in the troposphere is proposed.

Experimental evidence to support a theory of lipid membrane fusion.

Membrane fusion between two lipid membranes with different curvatures was measured by using a fluorescence fusion assay for lipid vesicle systems and was also obtained by measuring lipid monolayer surface tension upon the fusion of vesicles to monolayer membranes. For such membrane systems, it was found that when lysolipid was incorporated only in the membrane with a greater curvature, membrane fusion was more suppressed than those for the case where the same amount (molar ratio of lysolipid to non-lysolipids) of lysolipid was incorporated only in the membrane with a lower curvature. When lysolipid was incorporated only in a flat membrane (e.g., monolayer) and the fusion of small vesicles (SUV) to the monolayer was measured, suppression of membrane fusion by lysolipid was minimal. It is known that lysolipid lowers the surface energy of curved membranes, which stabilizes energetically such membrane surfaces, and thus suppresses membrane fusion. Our results support our theory of lipid membrane fusion where the membrane fusion occurs through the most curved membrane region at the contact area of two interacting membranes.

MALDI-TOF MS in lipidomics.

So far, matrix-assisted laser desorption and ionization time-of-flight mass spectrometry (MALDI-TOF MS) seemed to be nearly a synonym for protein analysis. However, there is growing evidence that this technique is also an useful tool in lipid analysis and lipidomics because of its fast, simple and convenient performance allowing to record mass spectra of cells, crude tissue or body fluid extracts or even intact tissue slices in a few minutes. On the negative side, however, the reproducibility of MALDI-TOF mass spectra depends significantly on the homogeneity of the co-crystals between matrix and analyte and different lipid classes are detected with different sensitivities. This is especially important because lipids with quaternary ammonia groups (e.g., GPCho) may prevent the detection of other lipid classes (e.g., GPEtn). This review starts with a short overview on traditional methods of lipid analysis with the focus on mass spectrometric methods and compares MALDI-TOF MS with other important ionization techniques. Afterwards, some landmarks in the development of MALDI-TOF MS will be introduced and some important examples in the field of tissue and body fluid lipid analysis will be discussed. This review ends with a short outlook and summary focusing on the advantages and drawbacks of MALDI-TOF MS in lipidomics.

Analysis of extracellular matrix production in artificial cartilage constructs by histology, immunocytochemistry, mass spectrometry, and NMR spectroscopy.

Artificial cartilage constructs based on primary porcine chondrocytes embedded in agarose gel were cultivated for six weeks under static, free swelling conditions. Standard biochemical assays, immunocytochemical staining methods, MALDI-TOF mass spectrometry, and non-invasive 13C solid-state NMR spectroscopy were used to assess cell proliferation, chondrocyte metabolism, extracellular matrix composition, matrix production, and the nanoarchitecture of the macromolecules in the constructs. In particular the production of sulphated glycosaminoglycans such as chondroitin sulphate was investigated quantitatively. Standard methods such as histological and immunocytochemical tools as well as spectrophotometric assays indicated the production of extracellular matrix in the artificial cartilage constructs. In addition, MALDI-TOF mass spectrometric data allowed to clearly identify the production of chondroitin sulphate in the tissue engineered cartilage. While all these methods require invasive sample treatment, 13C NMR spectroscopy allows to study the composition of the artificial cartilage constructs without previous manipulations. Though lower in sensitivity, 13C NMR spectra clearly showed the presence of chondroitin sulphate in the constructs. To increase the sensitivity of the NMR method, a culture medium that contained uniformly 13C labelled glucose but no sodium pyruvate or L-glutamine was used. Thus, further insights into the chondrocyte metabolism ex vivo are possible. Therefore, MALDI-TOF mass spectrometry and 13C solid-state NMR are useful experimental techniques that can assist the quantitative evaluation and quality control of artificially engineered tissues.

The lipidated membrane anchor of full length N-Ras protein shows an extensive dynamics as revealed by solid-state NMR spectroscopy.

Many proteins involved in signal transduction are equipped with covalently attached lipid chains providing a hydrophobic anchor targeting these molecules to membranes. Despite the considerable biological significance of this membrane binding mechanism for 5-10% of all cellular proteins, to date very little is known about structural and dynamical features of lipidated membrane binding domains. Here we report the first comprehensive study of the molecular dynamics of the C-terminus of membrane-associated full-length lipidated Ras protein determined by solid-state NMR. Fully functional lipid-modified N-Ras protein was obtained by chemical-biological synthesis ligating the expressed water soluble N-terminus with a chemically synthesized (2)H or (13)C labeled lipidated heptapeptide. Dynamical parameters for the lipid chain modification at Cys 181 were determined from static (2)H NMR order parameter and relaxation measurements. Order parameters describing the amplitude of motion in the protein backbone and the side chain were determined from site-specific measurements of (1)H-(13)C dipolar couplings for all seven amino acids in the membrane anchor of Ras. Finally, the correlation times of motion were determined from temperature dependent relaxation time measurements and analyzed using a modified Lipari Szabo approach. Overall, the C-terminus of Ras shows a versatile dynamics with segmental fluctuations and axially symmetric overall motions on the membrane surface. In particular, the lipid chain modifications are highly flexible in the membrane.

The signal-to-noise ratio as a measure of HA oligomer concentration: a MALDI-TOF MS study.

MALDI-TOF MS (matrix-assisted laser desorption and ionization time-of-flight mass spectrometry) was used to determine ng amounts of defined hyaluronan (HA) oligomers obtained by enzymatic digestion of high molecular weight HA with testicular hyaluronate lyase. The signal-to-noise (S/N) ratio of the positive and negative ion spectra represents a reliable concentration measure: Amounts of HA down to about 40 fmol could be determined and there is a linear correlation between the S/N ratio and the HA amount between about 0.8 pmol and 40 fmol. However, the detection limits depend considerably on the size of the HA oligomer with larger oligomers being less sensitively detectable. The advantages and drawbacks of the S/N ratio as concentration measure are discussed.

Nitrite reduces the effects of HOCl on unsaturated phosphatidylcholines--a MALDI-TOF MS study.

The concentration of nitrite (NO2-) increases under inflammatory conditions. However, the physiological role of nitrite is so far controversial discussed: it was reported that effects of HOCl (an important inflammation mediator) on phospholipids (PL) may be enhanced but also reduced in the presence of nitrite. In this paper a simple model system was used: unsaturated phosphatidylcholine (PC) vesicles were treated with HOCl in the presence of varying NaNO2 concentrations and the yield of reaction products was determined by MALDI-TOF MS: the extent of chlorohydrin generation was significantly reduced in the presence of NaNO2 because HOCl is consumed by the oxidation of NO2- to NO3-. Similar results were obtained when HOCl was generated by the myeloperoxidase (MPO)/H2O2/Cl- system or the experiments were carried out in the presence of a simple peptide. It is concluded that the transient products of the reaction between HOCl and NO2- do not have a sufficient reactivity to modify PL.

Lipid modifications of a Ras peptide exhibit altered packing and mobility versus host membrane as detected by 2H solid-state NMR.

The human N-ras protein binds to cellular membranes by insertion of two covalently bound posttranslational lipid modifications, which is crucial for its function in signal transduction and cell proliferation. Mutations in ras may lead to unregulated cell growth and eventually cancer, making it an important therapeutic target. Here we have investigated the molecular details of the membrane binding mechanism. A heptapeptide derived from the C-terminus of the human N-ras protein was synthesized including two hexadecyl modifications. Solid-state 2H NMR was used to determine the packing and molecular dynamics of the ras lipid chains as well as the phospholipid matrix. Separately labeling the chains of the peptide and the phospholipids with 2H enabled us to obtain atomically resolved parameters relevant to their structural dynamics. While the presence of ras only marginally affected the packing of DMPC membranes, dramatically lower order parameters (S(CD)) were observed for the ras acyl chains indicating modified packing properties. Essentially identical projected lengths of the 16:0 ras chains and the 14:0 DMPC chains were found, implying that the polypeptide backbone is located at the lipid-water interface. Dynamical properties of both the ras and phospholipid chains were determined from spin-lattice 2H relaxation (R1Z) measurements. Plots of R1Z rates versus the corresponding squared segmental order parameters revealed striking differences. We propose the ras peptide is confined to microdomains containing DMPC chains which are in exchange with the bulk bilayer on the 2H NMR time scale (approximately 10(-5) s). Compared to the host DMPC matrix, the ras lipid modifications are extremely flexible and undergo relatively large amplitude motions. It is hypothesized that this flexibility is a requirement for the optimal anchoring of lipid-modified proteins to cellular membranes.

Membrane interaction of neuropeptide Y detected by EPR and NMR spectroscopy.

Neuropeptide Y (NPY) is one of the most abundant peptides in the central nervous system of mammals. It belongs to the best-conserved peptides in nature, i.e., the amino acid sequences of even evolutionary widely separated species are very similar to each other. Using porcine NPY, which differs from human NPY only at position 17 (a leucine residue exchanged for a methionine), labeled with a TOAC spin probe at the 2nd, 32nd, or 34th positions of the peptide backbone, the membrane binding and penetration of NPY was determined using EPR and NMR spectroscopy. The vesicular membranes were composed of phosphatidylcholine and phosphatidylserine at varying mixing ratios. From the analysis of the EPR line shapes, the spectral contributions of free, dimerized, and membrane bound NPY could be separated. This analysis was further supported by quenching experiments, which selected the contributions of the bound NPY fraction. The results of this study give rise to a model where the alpha-helical part of NPY (amino acids 13-36) penetrates the membrane interface. The unstructured N-terminal part (amino acids 1-12) extends into the aqueous phase with occasional contacts with the lipid headgroup region. Besides the mixing ratio of zwitterionic and negatively charged phospholipid species, the electrostatic peptide membrane interactions are influenced by the pH value, which determines the net charge of the peptide resulting in a modified membrane binding affinity. The results of these variations indicate that NPY binding to phospholipid membranes depends strongly on the electrostatic interactions. An estimation of the transfer energy of the peptide from aqueous solution to the membrane interface DeltaG supports the preferential interaction of NPY with negatively charged membranes.

The phosphatidylcholine/lysophosphatidylcholine ratio in human plasma is an indicator of the severity of rheumatoid arthritis: investigations by 31P NMR and MALDI-TOF MS.

OBJECTIVES: Lipid second messengers, e.g. lysophosphatidylcholines (LPC) are involved in the pathogenesis of inflammatory diseases, for instance, rheumatoid arthritis (RA). Unfortunately, the analysis of LPC in complex mixtures as present in body fluids is still challenging. DESIGN AND METHODS: Matrix-assisted laser desorption and ionization time-of-flight mass spectrometry (MALDI-TOF MS) was applied for phospholipid (PL) analysis of organic extracts of synovial fluids from patients with RA as well as the corresponding plasma. These data were compared with results obtained by high resolution 31P NMR spectroscopy. RESULTS: Synovial fluids may be replaced by plasma since the analysis of both body fluids gives very similar results. Patients undergoing treatment with TNF-alpha inhibitors (ADALIMUMAB (HUMIRA)) were examined in order to investigate whether the clinically-significant attenuation of disease activity is accompanied by changes of the PL composition of plasma. It will be shown that especially the PC/LPC ratios of plasma represent a reliable measure of inflammation and increase upon therapy. CONCLUSIONS: Since plasma samples are readily available, our approach might be useful to draw conclusions before puncture of the affected joints is necessary and the PC/LPC ratio detected in plasma may serve as an indicator of RA in early stages.

Modulation of lysozyme charge influences interaction with phospholipid vesicles.

Lysozyme is a globular protein which is known to bind to negatively charged phospholipid vesicles. In order to study the relationship between charge state of the protein and its interaction with negatively charged phospholipid membranes chemical modifications of the proteins were carried out. Succinylation and carbodiimide modification was used to shift the isoelectric point of lysozyme to lower and higher pH values, respectively. The binding of the modified lysozyme to phospholipid vesicles prepared from phosphatidic acid (PA) was determined using microelectrophoresis and ultracentrifugation. At acidic pH of the solution all lysozyme species reduced the surface charges of PA vesicles. Succinylated lysozyme (succ lysozyme) reduced the electrophoretic mobility (EPM) to nearly zero, whereas native lysozyme and carboxylated lysozyme (carbo lysozyme) changed the surface charge to positive values. At neutral pH, the reduction of surface charges was less for carbo lysozyme and unmodified lysozyme. Succ lysozyme did not change the EPM. Unmodified and carbo lysozyme decreased the magnitude of EPM, but the whole complex was still negatively charged. The bound fraction of all modified lysozyme to PA vesicles at high lysozyme/PA ratios was nearly constant at acidic pH. At low lysozyme/PA ratios the extent of bound lysozyme is changed in the order carbo>unmodified>succ lysozyme. Increasing the pH, the extent of bound lysozyme to PA large unilamellar vesicles (LUV) is reduced, at pH 9.0 only 35% of carbo lysozyme, 23% of unmodified lysozyme is bound, whereas succ lysozyme does not bind at pH 7.4 and 9.0. At low pH, addition of all lysozyme species resulted in a massive aggregation of PA liposomes, at neutral pH aggregation occurs at much higher lysozyme/PA ratios. Lysozyme binding to PA vesicles is accompanied by the penetration of lysozyme into the phospholipid membrane as measured by monolayer techniques. The penetration of lysozyme into the monolayer was modulated by pH and ionic strengths. The interaction of lysozyme with negatively charged vesicles leads to a decrease of the phospholipid vesicle surface hydration as measured by the shift of the maximum of the fluorescence signal of a headgroup labeled phospholipid. The binding of bis-ANS as an additional indicator for the change of surface hydrophobicity is increased at low pH after addition of lysozyme to the vesicles. More hydrophobic patches of the lysozyme-PA complex are exposed at low pH. At low pH the binding process of lysozyme to PA vesicles is followed by an extensive intermixing of phospholipids between the aggregated vesicles, accompanied by a massive leakage of the vesicle aqueous content. The extent of lysozyme interaction with PA LUV at neutral and acidic pH is in the order carbo lysozyme>lysozyme>succ lysozyme.

The self-diffusion behavior of polyethylene glycol in cartilageas studied by pulsed-field gradient NMR.

The self-diffusion behavior of the polyethylene glycol (PFG) polymer in bovine nasal cartilage was studied by pulsed-field gradient (PFG) nuclear magnetic resonance (NMR). PFG NMR allows the determination of the mean square displacement of molecules in a given diffusion time (in the range of a few milliseconds up to seconds), monitors distances in micrometer scales and has the advantage of being non-invasive. Moreover the application of pfg nmr does not require concentration gradients In a previous study, PFG NMR was used to investigate the self-diffusion behavior of the PEG polymer in cartilage at very highconcentrations. In this study, much lower PRG concentrations were used in order to detect the effects of the structural composition of the cartilage tissue more efficiently. It will be shown that at very low (<10 wt.-%) PFG concentrations, the effect of restricted polymer diffusion in cartilage is negligible. The self-diffusion coefficients (SDC) are primarily influenced by the water content and the molecular weight (MW) of the appliec. PFG. The problems encountered with PFG NMR diffusion studies using high field gradients as well as in vivo aspects of this study are discussed.

Desmosterol may replace cholesterol in lipid membranes.

Recently, knockout mice entirely lacking cholesterol have been described as showing only a mild phenotype. For these animals, synthesis of cholesterol was interrupted at the level of its immediate precursor, desmosterol. Since cholesterol is a major and essential constituent of mammalian cellular membranes, we asked whether cholesterol with its specific impact on membrane properties might be replaced by desmosterol. By employing various approaches of NMR, fluorescence, and EPR spectroscopy, we found that the properties of phospholipid membranes like lipid packing in the presence of cholesterol or desmosterol are very similar. However, for lanosterol, a more distant precursor of cholesterol synthesis, we found significant differences in comparison with cholesterol and desmosterol. Our results show that, from the point of view of membrane biophysics, cholesterol and desmosterol behave identically and, therefore, replacement of cholesterol by desmosterol may not impact organism homeostasis.

Evaluation of cartilage composition and degradation by high-resolution magic-angle spinning nuclear magnetic resonance.

Rheumatic diseases are accompanied by a progressive destruction of the cartilage layers of the joints. Although the number of patients suffering from rheumatic diseases is steadily increasing, degradation mechanisms of cartilage are not yet understood, and methods for early diagnosis are not available. Although some information on pathogenesis could be obtained from the nuclear magnetic resonance (NMR) spectra of degradation products in the supernatants of cartilage specimens incubated with degradation-causing agents, the most direct information on degradation processes would come from the native cartilage as such. To obtain highly resolved NMR spectra of cartilage, application of the recently developed high-resolution magic-angle spinning (HR-MAS) NMR technique is advisable to obtain small line-widths of individual cartilage resonances. This technique is nowadays commercially available for most NMR spectrometers and has the considerable advantage that the same pulse sequences as in high-resolution NMR can be applied. Except for a MAS spinning equipment, no solid-state NMR hardware is required. Therefore, this method can be easily implemented. Here, we describe the most important requirements that are necessary to record HR-MAS NMR spectra. The capabilities of the HR-MAS technique are discussed for the 1H and 13C NMR spectra of cartilage.

Pulsed-field gradient-nuclear magnetic resonance (PFG NMR) to measure the diffusion of ions and polymers in cartilage: applications in joint diseases.

Since cartilage contains neither blood nor lymph vessels, diffusion is the most important transport process for the supply of cartilage with nutrients and for the removal of metabolic waste products. Therefore, diffusion measurements are of high interest in cartilage research. Different techniques of diffusion measurements exist. Here we describe methods based on pulsed-field gradient nuclear magnetic resonance (PFG NMR). This technique offers the considerable advantage that neither concentration gradients nor labeling of the diffusing species are required. In addition to the description of the fundamentals and the applicability of PFG NMR studies in cartilage research, emphasis is on the influence of the observation time, Delta, on the diffusion coefficient, D: at short times, diffusion is primarily determined by the water content of the sample, and great care is needed to keep this parameter constant. However, by varying the diffusion time, data on the internal structure of cartilage, e.g., the distance of the collagen fibrils, can also be obtained. In addition to classical water diffusion, the diffusion behavior of selected ions and polymers in cartilage is described. The capabilities, the limitations, and the clinical relevance of diffusion measurements for the assessment of joint diseases are discussed.

Dynamics of collagen in articular cartilage studied by solid-state NMR methods.

Methods for studying the fast molecular dynamics of the rigid macromolecules in cartilage are described. The strong dipolar couplings and chemical shift anisotropies of these molecules necessitate application of solid-state nuclear magnetic resonance (NMR) techniques such as magic-angle spinning, cross-polarization, and high-power dipolar decoupling to obtain resolved NMR spectra. The molecules in cartilage that are amenable to these techniques are collagen and the rigid portion of the glycosaminoglycans (mostly hyaluronan). Site-specific mobility information is obtained from scaled dipolar couplings measured in 2D NMR experiments. Motionally averaged dipolar couplings can be interpreted in terms of order parameters that provide information about the amplitudes of molecular motions. Qualitative dynamics information is obtained from the simple wideline separation experiment measuring 1H-1H widelines representing the strength of the 1H-1H dipolar coupling. Quantitative values for molecular order parameters are obtained from precise measurements of 1H-13C dipolar couplings along the C-H bond vector. Two experimental techniques, the Lee-Goldburg cross-polarization and the dipolar coupling/chemical shift experiment, are illustrated to measure these 1H-13C dipolar couplings. Unlike glycosaminoglycans in cartilage, the collagen moiety remains substantially ordered, undergoing fast small amplitude motions. As enzymes cleave the macromolecules in articular cartilage in the course of arthritis, solid-state NMR techniques are capable of characterizing the increased motions of their degradation products in diseased cartilage.

Fluoro-modified chemotactic peptides: fMLF analogues.

A small library of peptide analogues of the chemotactic tripeptide For-Met-Leu-Phe-NH2 modified by substitution of Leu at position 2 by three different fluorinated amino acids varying in content of fluorine, length of the fluorinated side chain, and alkylation degree at the alpha-carbon atom was synthesized. The influence of the fluorine substitution on the biological activity was investigated by measuring the oxidative activity of neutrophils using a luminol-dependent chemiluminescence assay.