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1.
Pathogens ; 9(7)2020 Jul 21.
Article in English | MEDLINE | ID: mdl-32708289

ABSTRACT

The Epstein-Barr virus (EBV)-encoded nuclear antigen 1 (EBNA1) protein is expressed in all virus-associated malignancies, where it performs an essential role in the maintenance, replication and transcription of the EBV genome. In recent years, it has become apparent that EBNA1 can also influence cellular gene transcription. Here, we demonstrate that EBNA1 is able to stimulate the expression of the Transforming growth factor-beta (TGFß) superfamily member, bone morphogenic protein 2 (BMP2), with consequential activation of the BMP signalling pathway in carcinoma cell lines. We show that BMP pathway activation is associated with an increase in the migratory capacity of carcinoma cells, an effect that can be ablated by the BMP antagonist, Noggin. Gene expression profiling of authentic EBV-positive nasopharyngeal carcinoma (NPC) tumours revealed the consistent presence of BMP ligands, established BMP pathway effectors and putative target genes, constituting a prominent BMP "signature" in this virus-associated cancer. Our findings show that EBNA1 is the major viral-encoded protein responsible for activating the BMP signalling pathway in carcinoma cells and supports a role for this pathway in promoting cell migration and possibly, metastatic spread.

2.
Eur J Med Genet ; 61(4): 230-234, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29225144

ABSTRACT

The genetic association between autism spectrum disorder (ASD) and psychotic disorders such as schizophrenia is complicated and mirrors the clinical overlap between these conditions to some degree. However, no studies to date have examined the genetics of individuals dually diagnosed with both ASD and psychosis. In this study, we present findings of copy number variants (CNVs) from a study of 116 well-characterised individuals with this dual diagnosis. DNA was extracted and arrayed using the Affymetrix CytoScan HD 2.8M array or the Affymetrix Cytogenetics arrays and compared with existing samples from the Database of Genomic Variants and the Simons Simplex Collection of CNVs from individuals with ASD and their families. Twenty-seven novel CNVs ≥20k base pairs were identified in the sample, most occurring in only a single individual, although two were found in two female participants. Forty-nine rare CNVs (<1.5% rate in general population) were also found at significantly higher frequencies than expected. The findings may provide evidence for areas of further study in the understanding of the development of both ASD and psychosis due to the number of affected genetic regions that have not previously been linked to these conditions.


Subject(s)
Autism Spectrum Disorder/genetics , DNA Copy Number Variations , Psychotic Disorders/genetics , Autism Spectrum Disorder/complications , Humans , Psychotic Disorders/complications
3.
Int J Oncol ; 50(4): 1147-1159, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28259975

ABSTRACT

Despite advances in management, bladder cancer remains a major cause of cancer related complications. Characterisation of gene expression patterns in bladder cancer allows the identification of pathways involved in its pathogenesis, and may stimulate the development of novel therapies targeting these pathways. Between 2004 and 2005, cystoscopic bladder biopsies were obtained from 19 patients and 11 controls. These were subjected to whole transcript-based microarray analysis. Unsupervised hierarchical clustering was used to identify samples with similar expression profiles. Hypergeometric analysis was used to identify canonical pathways and curated networks having statistically significant enrichment of differentially expressed genes. Osteopontin (OPN) expression was validated by immunohistochemistry. Hierarchical clustering defined signatures, which differentiated between cancer and healthy tissue, muscle-invasive or non-muscle invasive cancer and healthy tissue, grade 1 and grade 3. Pathways associated with cell cycle and proliferation were markedly upregulated in muscle-invasive and grade 3 cancers. Genes associated with the classical complement pathway were downregulated in non-muscle invasive cancer. Osteopontin was markedly overexpressed in invasive cancer compared to healthy tissue. The present study contributes to a growing body of work on gene expression signatures in bladder cancer. The data support an important role for osteopontin in bladder cancer, and identify several pathways worthy of further investigation.


Subject(s)
Carcinoma/genetics , Gene Expression Regulation, Neoplastic , Molecular Targeted Therapy , Osteopontin/metabolism , Urinary Bladder Neoplasms/genetics , Aged , Aged, 80 and over , Biopsy , Carcinoma/drug therapy , Carcinoma/metabolism , Carcinoma/pathology , Cell Cycle , Cell Proliferation , Cluster Analysis , Complement Pathway, Classical/genetics , Cystoscopy , Down-Regulation , Female , Gene Expression Profiling , Humans , Immunohistochemistry , Male , Microarray Analysis , Middle Aged , Neoplasm Grading , Signal Transduction , Transcriptome , Up-Regulation , Urinary Bladder Neoplasms/drug therapy , Urinary Bladder Neoplasms/metabolism , Urinary Bladder Neoplasms/pathology , Urothelium/pathology
4.
J Virol ; 89(10): 5222-37, 2015 May.
Article in English | MEDLINE | ID: mdl-25787276

ABSTRACT

UNLABELLED: Epstein-Barr virus (EBV) infects most of the world's population and is causally associated with several human cancers, but little is known about how EBV genetic variation might influence infection or EBV-associated disease. There are currently no published wild-type EBV genome sequences from a healthy individual and very few genomes from EBV-associated diseases. We have sequenced 71 geographically distinct EBV strains from cell lines, multiple types of primary tumor, and blood samples and the first EBV genome from the saliva of a healthy carrier. We show that the established genome map of EBV accurately represents all strains sequenced, but novel deletions are present in a few isolates. We have increased the number of type 2 EBV genomes sequenced from one to 12 and establish that the type 1/type 2 classification is a major feature of EBV genome variation, defined almost exclusively by variation of EBNA2 and EBNA3 genes, but geographic variation is also present. Single nucleotide polymorphism (SNP) density varies substantially across all known open reading frames and is highest in latency-associated genes. Some T-cell epitope sequences in EBNA3 genes show extensive variation across strains, and we identify codons under positive selection, both important considerations for the development of vaccines and T-cell therapy. We also provide new evidence for recombination between strains, which provides a further mechanism for the generation of diversity. Our results provide the first global view of EBV sequence variation and demonstrate an effective method for sequencing large numbers of genomes to further understand the genetics of EBV infection. IMPORTANCE: Most people in the world are infected by Epstein-Barr virus (EBV), and it causes several human diseases, which occur at very different rates in different parts of the world and are linked to host immune system variation. Natural variation in EBV DNA sequence may be important for normal infection and for causing disease. Here we used rapid, cost-effective sequencing to determine 71 new EBV sequences from different sample types and locations worldwide. We showed geographic variation in EBV genomes and identified the most variable parts of the genome. We identified protein sequences that seem to have been selected by the host immune system and detected variability in known immune epitopes. This gives the first overview of EBV genome variation, important for designing vaccines and immune therapy for EBV, and provides techniques to investigate relationships between viral sequence variation and EBV-associated diseases.


Subject(s)
Epstein-Barr Virus Infections/virology , Genetic Variation , Genome, Viral , Herpesvirus 4, Human/genetics , Amino Acid Sequence , Antigens, Viral/genetics , Carrier State/virology , Cell Line, Tumor , DNA, Viral/genetics , Epitopes, T-Lymphocyte/genetics , Epstein-Barr Virus Nuclear Antigens/genetics , Herpesvirus 4, Human/classification , Herpesvirus 4, Human/isolation & purification , Humans , Phylogeny , Polymorphism, Single Nucleotide , Recombination, Genetic , Viral Matrix Proteins/genetics
5.
J Pathol ; 231(3): 367-77, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23934731

ABSTRACT

Nasopharyngeal carcinoma (NPC) is a cancer common in southern China and South East Asia that is causally linked to Epstein-Barr virus (EBV) infection. Here, we demonstrate that NPC displays frequent dysregulation of the Hedgehog (HH) pathway, a pathway implicated in the maintenance of stem cells, but whose aberrant activation in adult tissues can lead to cancer. Using authentic EBV-positive carcinoma-derived cell lines and nasopharyngeal epithelial cell lines latently infected with EBV as models for NPC in vitro, we show that EBV activates the HH signalling pathway through autocrine induction of SHH ligand. Moreover, we find that constitutive engagement of the HH pathway induces the expression of a number of stemness-associated genes and imposes stem-like characteristics on EBV-infected epithelial cells in vitro. Using epithelial cells expressing individual EBV latent genes detected in NPC, we show that EBNA1, LMP1, and LMP2A are all capable of inducing SHH ligand and activating the HH pathway, but only LMP1 and LMP2A are able to induce expression of stemness-associated marker genes. Our findings not only identify a role for dysregulated HH signalling in NPC oncogenesis, but also provide a novel rationale for therapeutic intervention.


Subject(s)
Epithelial Cells/metabolism , Epithelial Cells/virology , Hedgehog Proteins/metabolism , Herpesvirus 4, Human/metabolism , Nasopharyngeal Neoplasms/metabolism , Nasopharyngeal Neoplasms/virology , Neoplastic Stem Cells/metabolism , Neoplastic Stem Cells/virology , Signal Transduction , Carcinoma , Cell Line , Cell Transformation, Viral , Epithelial Cells/pathology , Epstein-Barr Virus Nuclear Antigens/genetics , Epstein-Barr Virus Nuclear Antigens/metabolism , Gene Expression Regulation, Neoplastic , Herpesvirus 4, Human/genetics , Humans , Ligands , Nasopharyngeal Carcinoma , Nasopharyngeal Neoplasms/genetics , Nasopharyngeal Neoplasms/pathology , Neoplastic Stem Cells/pathology , Phenotype , Viral Matrix Proteins/genetics , Viral Matrix Proteins/metabolism
6.
PLoS One ; 7(7): e41055, 2012.
Article in English | MEDLINE | ID: mdl-22815911

ABSTRACT

Previous studies have reported that the tumour cells of nasopharyngeal carcinoma (NPC) exhibit recurrent chromosome abnormalities. These genetic changes are broadly assumed to lead to changes in gene expression which are important for the pathogenesis of this tumour. However, this assumption has yet to be formally tested at a global level. Therefore a genome wide analysis of chromosome copy number and gene expression was performed in tumour cells micro-dissected from the same NPC biopsies. Cellular tumour suppressor and tumour-promoting genes (TSG, TPG) and Epstein-Barr Virus (EBV)-encoded oncogenes were examined. The EBV-encoded genome maintenance protein EBNA1, along with the putative oncogenes LMP1, LMP2 and BARF1 were expressed in the majority of NPCs that were analysed. Significant downregulation of expression in an average of 76 cellular TSGs per tumour was found, whilst a per-tumour average of 88 significantly upregulated, TPGs occurred. The expression of around 60% of putative TPGs and TSGs was both up-and down-regulated in different types of cancer, suggesting that the simplistic classification of genes as TSGs or TPGs may not be entirely appropriate and that the concept of context-dependent onco-suppressors may be more extensive than previously recognised. No significant enrichment of TPGs within regions of frequent genomic gain was seen but TSGs were significantly enriched within regions of frequent genomic loss. It is suggested that loss of the FHIT gene may be a driver of NPC tumourigenesis. Notwithstanding the association of TSGs with regions of genomic loss, on a gene by gene basis and excepting homozygous deletions and high-level amplification, there is very little correlation between chromosomal copy number aberrations and expression levels of TSGs and TPGs in NPC.


Subject(s)
Carcinoma/metabolism , Carcinoma/virology , Gene Expression Regulation, Neoplastic , Nasopharyngeal Neoplasms/metabolism , Nasopharyngeal Neoplasms/virology , Female , Gene Deletion , Gene Expression Profiling , Gene Expression Regulation, Viral , Herpesvirus 4, Human/metabolism , Homozygote , Humans , Oligonucleotide Array Sequence Analysis , Promoter Regions, Genetic , Transcription, Genetic , Up-Regulation , Viral Matrix Proteins/biosynthesis , Viral Proteins/biosynthesis
7.
Int J Cancer ; 131(4): E348-61, 2012 Aug 15.
Article in English | MEDLINE | ID: mdl-21913186

ABSTRACT

Gene expression profiling has recently enabled the reclassification of aggressive non-Hodgkin lymphomas (aNHL) into distinct subgroups. In Burkitt lymphoma (BL) aberrant c-Myc activity results from IG-MYC translocations. However, MYC aberrations are not limited to BLs and then have a negative prognostic impact. In this study, we investigated to which extent aberrant c-Myc activity plays a functional role in other aNHL and whether it is independent from MYC translocations. Based on a combined microarray analysis of human germinal center (GC) B cells transfected with c-Myc and 220 aNHLs cases, we developed a "c-Myc index." This index measures the extent to which lymphomas express c-Myc responsive genes. It comprises genes that are affected in a variety of tumors compared to normal tissue. This supports the view that aberrant c-Myc expression in GC B cells triggers a tumor-like expression pattern. As expected, the "c-Myc index" is very high in molecular Burkitt lymphoma (mBL), but more importantly also high within other aNHL. It constitutes a negative prognostic marker independent of established risk factors and of the presence of a MYC translocation. Our data provide new insights into the role of c-Myc activity in different lymphomas and raises the question of treatment changes for those patients under risk.


Subject(s)
Lymphoma, Large B-Cell, Diffuse/metabolism , Proto-Oncogene Proteins c-myc/metabolism , Base Sequence , Blotting, Western , Cell Line, Tumor , DNA Primers , Fluorescent Antibody Technique , Humans , Lymphoma, Large B-Cell, Diffuse/pathology , Prognosis , Proto-Oncogene Proteins c-myc/genetics , Real-Time Polymerase Chain Reaction
8.
Bioorg Med Chem Lett ; 22(1): 129-32, 2012 Jan 01.
Article in English | MEDLINE | ID: mdl-22169264

ABSTRACT

Single nucleotide polymorphisms within a sequence of a gene associated with prostate cancer were identified using oligodeoxynucleotide probe sequences bearing internal anthracene fluorophores proximal to the SNP site. Depending upon the nature of the synthesised target sequences, probe-target duplex formation could lead to enhanced or attenuated fluorescence emission from the anthracene, enabling detection of a proximal base-pair as either matching or mismatching.


Subject(s)
DNA Probes/chemistry , DNA/chemistry , Fluorescent Dyes/chemistry , Polymorphism, Single Nucleotide , Prostatic Neoplasms/metabolism , Anthracenes/chemistry , Base Pair Mismatch , Base Sequence , DNA/genetics , Humans , Male , Models, Chemical , Molecular Sequence Data , Nucleic Acid Conformation , Prostatic Neoplasms/genetics , Spectrophotometry, Ultraviolet , Temperature , Thermodynamics
9.
Mol Cancer ; 9: 241, 2010 Sep 15.
Article in English | MEDLINE | ID: mdl-20843307

ABSTRACT

BACKGROUND: Epstein-Barr Virus (EBV)-encoded RNAs (EBERs) are non-polyadenylated RNA molecules transcribed from the EBV genome by RNA polymerase III (pol III). EBERs are the most abundant viral latent gene products, although the precise mechanisms by which EBV is able to achieve such high levels of EBER expression are not fully understood. Previously EBV has been demonstrated to induce transcription factors associated with EBER expression, including pol III transcription factors and ATF-2. We have recently demonstrated that EBV-encoded nuclear antigen-1 (EBNA1) induces cellular transcription factors, and given these findings, we investigated the role of EBNA1 in induction of EBER-associated transcription factors. RESULTS: Our data confirm that in epithelial cells EBNA1 can enhance cellular pol III transcription. Transient expression of EBNA1 in Ad/AH cells stably expressing the EBERs led to induction of both EBER1 and EBER2 and conversely, expression of a dominant negative EBNA1 led to reduced EBER expression in EBV-infected Ad/AH cells. EBNA1 can induce transcription factors used by EBER genes, including TFIIIC, ATF-2 and c-Myc. A variant chromatin precipitation procedure showed that EBNA1 is associated with the promoters of these genes but not with the promoters of pol III-transcribed genes, including the EBERs themselves. Using shRNA knock-down, we confirm the significance of both ATF-2 and c-Myc in EBER expression. Further, functional induction of a c-Myc fusion protein led to increased EBER expression, providing c-Myc binding sites upstream of EBER1 were intact. In vivo studies confirm elevated levels of the 102 kD subunit of TFIIIC in the tumour cells of EBV-positive nasopharyngeal carcinoma biopsies. CONCLUSIONS: Our findings reveal that EBNA1 is able to enhance EBER expression through induction of cellular transcription factors and add to the repertoire of EBNA1's transcription-regulatory properties.


Subject(s)
Activating Transcription Factor 2/metabolism , Epstein-Barr Virus Nuclear Antigens/metabolism , RNA Polymerase III/metabolism , RNA, Viral/metabolism , Transcription Factors/metabolism , Activating Transcription Factor 2/genetics , Cell Line, Tumor , Chromatin Immunoprecipitation , Epstein-Barr Virus Nuclear Antigens/genetics , Fluorescent Antibody Technique , Humans , Immunoblotting , Immunohistochemistry , Oligonucleotide Array Sequence Analysis , Proto-Oncogene Proteins c-myc/genetics , Proto-Oncogene Proteins c-myc/metabolism , RNA Polymerase III/genetics , RNA, Viral/genetics , Reverse Transcriptase Polymerase Chain Reaction , Transcription Factors/genetics , Transcription Factors, TFIII/genetics , Transcription Factors, TFIII/metabolism
10.
Mol Cancer ; 9: 1, 2010 Jan 05.
Article in English | MEDLINE | ID: mdl-20051109

ABSTRACT

BACKGROUND: The Epstein-Barr virus (EBV)-encoded EBNA1 protein is expressed in all EBV-associated tumours, including undifferentiated nasopharyngeal carcinoma (NPC), where it is indispensable for viral replication, genome maintenance and viral gene expression. EBNA1's transcription factor-like functions also extend to influencing the expression of cellular genes involved in pathways commonly dysregulated during oncogenesis, including elevation of AP-1 activity in NPC cell lines resulting in enhancement of angiogenesis in vitro. In this study we sought to extend these observations by examining the role of EBNA1 upon another pathway commonly deregulated during carcinogenesis; namely NF-kappaB. RESULTS: In this report we demonstrate that EBNA1 inhibits the canonical NF-kappaB pathway in carcinoma lines by inhibiting the phosphorylation of IKKalpha/beta. In agreement with this observation we find a reduction in the phosphorylation of IkappaBalpha and reduced phosphorylation and nuclear translocation of p65, resulting in a reduction in the amount of p65 in nuclear NF-kappaB complexes. Similar effects were also found in carcinoma lines infected with recombinant EBV and in the EBV-positive NPC-derived cell line C666-1. Inhibition of NF-kappaB was dependent upon regions of EBNA1 essential for gene transactivation whilst the interaction with the deubiquitinating enzyme, USP7, was entirely dispensable. Furthermore, in agreement with EBNA1 inhibiting p65 NF-kappaB we demonstrate that p65 was exclusively cytoplasmic in 11 out of 11 NPC tumours studied. CONCLUSIONS: Inhibition of p65 NF-kappaB in murine and human epidermis results in tissue hyperplasia and the development of squamous cell carcinoma. In line with this, p65 knockout fibroblasts have a transformed phenotype. Inhibition of p65 NF-kappaB by EBNA1 may therefore contribute to the development of NPC by inducing tissue hyperplasia. Furthermore, inhibition of NF-kappaB is employed by viruses as an immune evasion strategy which is also closely linked to oncogenesis during persistent viral infection. Our findings therefore further implicate EBNA1 in playing an important role in the pathogenesis of NPC.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/metabolism , Herpesvirus 4, Human/metabolism , I-kappa B Kinase/metabolism , NF-kappa B/metabolism , Signal Transduction , CCAAT-Enhancer-Binding Protein-beta/genetics , Cell Line, Tumor , Cell Nucleus/metabolism , Cytoplasm/metabolism , Down-Regulation/genetics , Epstein-Barr Virus Nuclear Antigens/chemistry , Gene Expression Regulation, Neoplastic , Gene Expression Regulation, Viral , Genes, Viral/genetics , Herpesvirus 4, Human/genetics , Humans , Nasopharyngeal Neoplasms/genetics , Nasopharyngeal Neoplasms/metabolism , Phosphorylation , Protein Structure, Tertiary , Protein Transport , Receptors, Interleukin-1/genetics , Receptors, Interleukin-1/metabolism , Receptors, Tumor Necrosis Factor/genetics , Receptors, Tumor Necrosis Factor/metabolism , Sequence Deletion , Transcription Factor RelA/metabolism , Transcriptional Activation/genetics , Up-Regulation/genetics
11.
J Pathol ; 217(3): 345-52, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19142888

ABSTRACT

A micro-array analysis using biopsies from patients with EBV-positive undifferentiated nasopharyngeal carcinoma (NPC) and from cancer-free controls revealed down-regulation of tumour suppressor genes (TSG) not previously associated with this disease; one such gene was the ataxia telangiectasia mutated (ATM) gene. Q-PCR confirmed down-regulation of ATM mRNA and ATM protein expression in tumour cells was weak or absent in almost all cases. In NPC cell lines, however, ATM was down-regulated only in the EBV-positive line, C666.1, and in none of five EBV-negative lines. In vitro infection of EBV-negative NPC cell lines with a recombinant EBV was followed by the down-regulation of ATM mRNA and protein, and only EBV-positive cells showed a defective DNA damage response following gamma-irradiation. Our data suggest that loss of ATM function could be an important step in the pathogenesis of NPC, and may have implications for the treatment of this disease.


Subject(s)
Adenocarcinoma/genetics , Cell Cycle Proteins/genetics , DNA-Binding Proteins/genetics , Down-Regulation , Gene Expression Regulation, Neoplastic , Gene Expression Regulation, Viral , Nasopharyngeal Neoplasms/genetics , Protein Serine-Threonine Kinases/genetics , Tumor Suppressor Proteins/genetics , Adenocarcinoma/virology , Ataxia Telangiectasia Mutated Proteins , Case-Control Studies , Cell Cycle Proteins/analysis , Cell Line, Tumor , DNA-Binding Proteins/analysis , Gene Expression Profiling/methods , Herpesvirus 4, Human , Humans , Immunohistochemistry , Nasopharyngeal Neoplasms/virology , Oligonucleotide Array Sequence Analysis , Protein Serine-Threonine Kinases/analysis , Reverse Transcriptase Polymerase Chain Reaction , Tumor Suppressor Proteins/analysis , Tumor Virus Infections/complications , Tumor Virus Infections/genetics
12.
J Gen Virol ; 89(Pt 11): 2806-2820, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18931079

ABSTRACT

SCC12F cells are a line of keratinocytes that retain the capacity for terminal differentiation in vitro. We showed previously that the Epstein-Barr virus (EBV)-encoded oncogene latent membrane protein 1 (LMP1) altered SCC12F morphology in vitro, downregulated cell-cell-adhesion molecule expression and promoted cell motility. In organotypic raft culture, LMP1-expressing cells failed to stratify and formed poorly organized structures which displayed impaired terminal differentiation. To understand better the mechanism(s) by which LMP1 induces these effects, we generated SCC12F cells in which LMP1 expression is inducible. Following induction, these cells exhibited phenotypic changes similar to those observed previously and allowed us to investigate the effects of LMP1 expression on cellular pathways associated with growth, differentiation and morphology. Using microarrays and a number of confirmatory techniques, we identified sets of differentially expressed genes that are characteristically expressed in inflammatory and hyperproliferative epidermis, including chemokines, cytokines and their receptors, growth factors involved in promoting epithelial cell motility and proliferation and signalling molecules that regulate actin filament reorganization and cell movement. Among the genes whose expression was differentially induced significantly by LMP1, the induction of IL-1beta and IL-1alpha was of particular interest, as many of the LMP1-regulated genes identified are established targets of these cytokines. Our findings suggest that alterations in the IL-1 signalling network may be responsible for many of the changes in host-cell gene expression induced in response to LMP1. Identification of these LMP1-regulated genes helps to define the mechanism(s) by which this oncoprotein influences cellular pathways that regulate terminal differentiation, cell motility and inflammation.


Subject(s)
Herpesvirus 4, Human/pathogenicity , Keratinocytes/physiology , Viral Matrix Proteins/adverse effects , Antibodies, Viral , Cell Differentiation , Cell Division/genetics , Cell Line , Cell Movement , Flow Cytometry , Gene Expression Regulation , Humans , Inflammation/genetics , Keratinocytes/pathology , Nucleic Acid Hybridization , RNA, Viral/genetics , RNA, Viral/isolation & purification , Wounds and Injuries/virology
13.
J Gen Virol ; 89(Pt 11): 2833-2842, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18931081

ABSTRACT

The Epstein-Barr virus (EBV)-encoded EBNA1 protein is expressed in all virus-associated tumours, including nasopharyngeal carcinoma (NPC), where it plays an essential role in EBV genome maintenance, replication and transcription. Previous studies suggest that EBNA1 may have additional effects relevant to oncogenesis, including enhancement of cell survival, raising the possibility that EBNA1 may influence cellular gene expression. We have recently demonstrated by gene expression microarray profiling in an NPC cell model that EBNA1 influences the expression of a range of cellular genes, including those involved in transcription, translation and cell signalling. Here, we report for the first time that EBNA1 enhances activity of the AP-1 transcription factor in NPC cells and demonstrate that this is achieved by EBNA1 binding to the promoters of c-Jun and ATF2, enhancing their expression. In addition, we demonstrate elevated expression of the AP-1 targets interleukin 8, vascular endothelial growth factor (VEGF) and hypoxia-inducible factor-1alpha in response to EBNA1 expression, which enhances microtubule formation in an in vitro angiogenesis assay. Furthermore, we confirm elevation of VEGF and the phosphorylated isoforms of c-Jun and ATF2 in NPC biopsies. These findings implicate EBNA1 in the angiogenic process and suggest that this viral protein might directly contribute to the development and aggressively metastatic nature of NPC.


Subject(s)
Epstein-Barr Virus Nuclear Antigens/genetics , Herpesvirus 4, Human/genetics , Nasopharyngeal Neoplasms/blood supply , Nasopharyngeal Neoplasms/genetics , Neovascularization, Pathologic/genetics , Transcription Factor AP-1/physiology , Adenocarcinoma , Cell Line , Cell Line, Tumor , Gene Expression Regulation, Neoplastic , Genome, Viral , Humans , Immunohistochemistry , Interleukin-8/physiology , Kidney/embryology , Microtubules/pathology , Nasopharyngeal Neoplasms/virology , Neovascularization, Pathologic/virology , Vascular Endothelial Growth Factor A/physiology
14.
J Immunol ; 179(5): 2705-12, 2007 Sep 01.
Article in English | MEDLINE | ID: mdl-17709483

ABSTRACT

Activated B cells reacting to small amounts of CD40L (CD154) maintain homeostasis by suppressing default apoptosis. Additional outcomes, particularly differentiation, demand higher CD40 occupancy. Here, focusing on survival, we compared changes in the transcriptome of pleiotropically competent, early passage L3055 Burkitt's lymphoma cells confronted with low (picomolar) and high (nanomolar) concentrations of CD154 to gain insight into how a single receptor sets these distinct phenotypes. Of 267 genes altering transcriptional activity in response to strong CD154 tone, only 25 changed coordinately on low receptor occupancy. Seven of the top nine common up-regulated genes were targets of NF-kappaB. Direct measurement and functional inhibition of the NF-kappaB pathway revealed it to be central to a CD40-dependent survival signature. Although the canonical NF-kappaB axis was engaged by both signaling strengths equally, robust alternative pathway activation was a feature selective to a strong CD40 signal. Discriminatory exploitation of the two separate arms of NF-kappaB activation may indicate a principle whereby a cell senses and reacts differentially to shifting ligand availability. Identifying components selectively coupling CD40 to each axis could indicate targets for disruption in B cell pathologies underpinned by ectopic and/or hyper-CD154 activity such as neoplasia and some autoimmunities.


Subject(s)
Burkitt Lymphoma/genetics , CD40 Antigens/immunology , CD40 Ligand/immunology , CD40 Ligand/pharmacology , Cell Line, Tumor , Cell Survival , Gene Expression , Gene Expression Profiling , Humans , NF-kappa B/analysis , NF-kappa B/antagonists & inhibitors , NF-kappa B/metabolism , Signal Transduction/genetics , Signal Transduction/immunology , Transcription, Genetic
15.
J Biol Chem ; 281(45): 33871-80, 2006 Nov 10.
Article in English | MEDLINE | ID: mdl-16956891

ABSTRACT

The EBER genes of Epstein-Barr virus (EBV) are transcribed by RNA polymerase (pol) III to produce untranslated RNAs that are implicated in oncogenesis. These EBER transcripts are the most highly expressed viral gene products in EBV-transformed cells. We have identified changes to the cellular transcription machinery that may contribute to the high levels of EBER RNA. These include phosphorylation of ATF2, which interacts with EBER promoters. A second is induction of TFIIIC, a pol III-specific factor that activates EBER genes; all five subunits of TFIIIC are overexpressed in EBV-positive cells. In addition, EBV induces BDP1, a subunit of the pol III-specific factor TFIIIB. Although BDP1 is the only TFIIIB subunit induced by EBV, its induction is sufficient to stimulate EBER expression in vivo, implying a limiting function. The elevated levels of BDP1 and TFIIIC in EBV-positive cells stimulate production of tRNA, 7SL, and 5S rRNA. Abnormally high expression of these cellular pol III products may contribute to the ability of EBV to enhance growth potential.


Subject(s)
Gene Expression Regulation, Viral/physiology , Herpesvirus 4, Human/physiology , RNA Polymerase III/metabolism , RNA, Viral/genetics , Transcription Factors, TFIII/metabolism , Transcription, Genetic , Blotting, Western , Chromatin Immunoprecipitation , DNA-Binding Proteins , Electrophoretic Mobility Shift Assay , Humans , Mutagenesis, Site-Directed , Nuclear Matrix-Associated Proteins , Octamer Transcription Factors , Promoter Regions, Genetic/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA-Binding Proteins , Reverse Transcriptase Polymerase Chain Reaction , Transcription Factor TFIIIB/genetics , Transcription Factor TFIIIB/metabolism , Transfection
16.
J Immunol ; 173(1): 321-31, 2004 Jul 01.
Article in English | MEDLINE | ID: mdl-15210790

ABSTRACT

The role of monocytes and macrophages during EBV infection is not clear. The interaction of EBV with human monocytes was investigated in terms of cell survival and morphological and phenotypic changes to gain a better understanding of the role of these cells during EBV infection. We show that EBV infection of PBMCs rescues monocytes from undergoing spontaneous apoptosis and dramatically enhances their survival. Results obtained with heat-inactivated virus, neutralizing anti-EBV mAb 72A1 and recombinant gp350, suggest that enhancement of viability by EBV requires both infectious virus and interaction between gp350 and its receptor. IFN-alpha either secreted within 24 h from PBMCs upon infection with EBV or exogenously added to unstimulated monocytes inhibited spontaneous apoptosis, indicating that induction of IFN-alpha is an early important survival signal responsible for the delay in the apoptosis of monocytes. EBV infection also induced acute maturation of monocytes to macrophages with morphological and phenotypic characteristics of potent APCs. Monocytes exposed to EBV became larger in size with increased granularity and expressed considerably higher levels of membrane HLA classes I and II, ICAM-1, CD80, CD86, and CD40 compared with uninfected cultures. These observations provide the first immunoregulatory links among EBV, IFN-alpha, and monocyte survival and maturation and importantly raise the possibility that these cells may serve as a vehicle for the dissemination of the virus as well as being active participants in eliciting anti-EBV T cell responses during acute infection.


Subject(s)
Herpesvirus 4, Human/physiology , Interferon-alpha/biosynthesis , Monocytes/physiology , Apoptosis , Cell Survival , Humans , Viral Matrix Proteins/physiology
17.
Ai Zheng ; 23(1): 50-5, 2004 Jan.
Article in Chinese | MEDLINE | ID: mdl-14720374

ABSTRACT

BACKGROUND & OBJECTIVE: It was proved that telomerase is an important determinant in tumor progression and cell immortalization. Ribozyme is a special kind of trans-acting RNA with endonuclease activity and sequence-specific catalytic RNA molecules, which can cleave target RNA. It was reported that telomerase activity is present in human poorly-differentiated nasopharyngeal carcinoma (NPC) CNE-2Z cells. This study was designed to construct eukaryotic expression plasmids containing telomerase ribozyme (teloRZ)gene targeting the template region of human telomerase RNA (hTR) and then to transfect the plasmids into CNE-2Z cells by electroporation to investigate the effect of teloRZ on proliferation and apoptosis of those transfected CNE-2Z cells. METHODS: Hammer ribozyme gene teloRZ directed against telomerase RNA templet was designed and synthesized to serve as a telomerase inhibitor. Three different eukaryotic expression plasmids carried with the green fluorescent protein (GFP) reporter gene and puromycin-resistance gene and containing teloRZ gene were constructed. They were referred to as pGFPuro-teloRZ2.1, pGFPuro-teloRZ7.1, and pGFPuro-teloRZ7.7 and differed in the relative orientation of the genes for telomerase-ribozyme and puromycin-resistance. The CNE-2Z cells were transfected with three expression plasmids and control plasmid pPAT-GFP by electroporation. The expression of GFP was detected by fluorescent microscope; cellular proliferation index (PI) and apoptosis were investigated by flow cytometry analysis and fluorescence staining. RESULTS: PI of CNE-2ZGTR7.1 cells transfected by plasmid pGFPuro-teloRZ7.1 (25.100%+/-0.141%)was significantly lower than those of CNE-2Z cells untransfected by any plasmid (53.663%+/-16.981%),CNE-2ZG cells transfected by control plasmid pPAT-GFP (61.575%+/-5.166%),CNE-2ZGTR2.1 cells transfected by plasmid pGFPuro-teloRZ2.1 (61.500%+/-20.082%), and CNE-2ZGTR7.7 cells transfected by plasmid pGFPuro-teloRZ7.7 (59.400%+/-13.933%) (P< 0.01). GFP was detected in CNE-2ZG cells,CNE-2ZGTR7.1 cells, and CNE-2ZGTR7.7 cells;while there was no GFP expression in CNE-2Z cells and CNE-2ZGTR2.1 cells. The plasmid pGFPuro-teloRZ7.1 was selected from 3 plasmids for further experiments. Apoptosis could be observed in CNE-2ZGTR7.1 cells after 12 generations. There was no apoptosis occurring in CNE-2Z and CNE-2ZG cells. CONCLUSION: The teloRZ7.1 gene was electroporated successfully into CNE-2Z cells. TeloRZ7.1 can inhibit the proliferation and induce apoptosis of CNE-2Z cells. These findings suggest the potential application of ribozyme teloRZ7.1 as telomerase inhibitor.


Subject(s)
Apoptosis/drug effects , Nasopharyngeal Neoplasms/pathology , RNA, Catalytic/pharmacology , RNA/metabolism , Telomerase/metabolism , Cell Division/drug effects , Cell Line, Tumor , Flow Cytometry , Humans , Plasmids , Transfection
18.
Ai Zheng ; 22(5): 481-5, 2003 May.
Article in Chinese | MEDLINE | ID: mdl-12753707

ABSTRACT

BACKGROUND & OBJECTIVE: It has been proved that Epstein- Barr virus (EBV) latent membrane protein 1 (EBV-LMP1) can induce the expression of matrix metalloproteinase-9 (MMP-9). This study was designed to investigate the effect of EBV-LMP1 on related factors of metastasis of nasopharyngeal carcinoma cell line CNE1. METHODS: Expression of MMP-9 was studied in human NPC cell lines cultured in vitro: CNE1 (well differentiated cell line of NPC) and CNE1-GL (CNE1 cell line transfected with an eukaryotic LMP1-expression plasmid) by SP immunohistochemistry and Western blot analysis. Cell-matrix adhesion assay was used to study the adhesive ability of CNE1-GL cells. The effects of LMP1 on the invasion and migration of CNE1 cells were investigated by transwell methods. RESULTS: MMP-9 was expressed in both cell lines but the intensity of the staining was different. The positive rates of expression of MMP-9 in CNE1 and CNE1-GL cells were 30.2% and 98.2%, respectively (P< 0.05). The increased expression of MMP-9 was also shown in CNE1-GL cells by Western blot analysis. Cell-matrix adhesion assay showed that the adhesive ability of CNE1-GL with the matrix (mean A value: 1.2508+/-0.0711) was higher than that of CNE1 cell (mean A value: 0.9519+/-0.068) (P< 0.001). Invasion assay and migration assay showed that the invasion and migration of CNE1-GL cell were higher than those of CNE1 cells (P< 0.01). CONCLUSION: The transfection of LMP1 can increase the expression of MMP-9 in CNE1 cells. Abilities of adhesion, migration, and invasion of CNE1 cell were induced by LMP1. It is suggested that MMP-9 may have a role in the LMP1-induced acceleration of invasion and metastasis of NPC cells.


Subject(s)
Cell Movement/drug effects , Nasopharyngeal Neoplasms/pathology , Viral Matrix Proteins/pharmacology , Viral Proteins/pharmacology , Cell Adhesion/drug effects , Gene Expression/drug effects , Humans , Matrix Metalloproteinase 9/metabolism , Neoplasm Metastasis , Tumor Cells, Cultured
19.
Virology ; 304(2): 342-51, 2002 Dec 20.
Article in English | MEDLINE | ID: mdl-12504574

ABSTRACT

Monocytes and macrophages play a central role in viral infections, as a target for viruses and in activation of both innate and adaptive immune responses. Epstein-Barr virus (EBV) has evolved elaborate strategies to dampen the immune system and to persist within the host. There is evidence that the product of the BCRF-1 open reading frame of EBV, viral interleukin-10 (vIL-10), inhibits the capacity of monocytes/macrophages to induce T cell activation, but the full mechanism of this effect is unknown. To determine whether this effect might involve modulation of the expression of accessory molecules known to be important in T cell activation, we analyzed by flow cytometry the influence of vIL-10 on the basal as well as on IFN-gamma-induced up-regulation of HLA molecules, ICAM-1, and two members of the B7 family B7.1 (CD80) and B7.2 (CD86) at the surface of human monocytes. Viral IL-10 in a concentration-dependent manner inhibited both basal- and IFN-gamma-induced HLA-class II, ICAM-1 (basal levels of ICAM-2 and ICAM-3 is unaffected), CD80, and CD86 up-regulation when added simultaneously with IFN-gamma. In contrast, complete inhibition of HLA-class I expression on monocytes/macrophages occurred only when vIL-10 was present 2 h prior to the addition of IFN-gamma, implying that vIL-10 affects an early step in the IFN-gamma signaling pathway. As both monocytes and macrophages can be infected by EBV, we propose that vIL-10-mediated impairment of monocyte/macrophage antigen-presenting function could help the virus-infected cells to avoid detection by the host's T cells on one hand and contribute to its immunosuppressive properties on the other.


Subject(s)
B7-1 Antigen/analysis , Herpesvirus 4, Human/pathogenicity , Histocompatibility Antigens Class I/analysis , Intercellular Adhesion Molecule-1/analysis , Interleukin-10/toxicity , Monocytes/drug effects , Viral Proteins/toxicity , Antigen Presentation/drug effects , Antigens, CD/analysis , B7-2 Antigen , Cells, Cultured , Histocompatibility Antigens Class II/analysis , Humans , Interferon-gamma/pharmacology , Macrophages/chemistry , Macrophages/drug effects , Membrane Glycoproteins/analysis , Monocytes/chemistry
20.
J Gen Virol ; 83(Pt 7): 1621-1633, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12075080

ABSTRACT

A gammaherpesvirus related to Epstein-Barr virus (EBV; Human herpesvirus 4) infects otherwise healthy common marmosets (Callithrix jacchus). Long-term culture of common marmoset peripheral blood lymphocytes resulted in outgrowth of spontaneously immortalized lymphoblastoid cell lines, primarily of B cell lineage. Electron microscopy of cells and supernatants showed herpesvirus particles. There were high rates of serological cross-reactivity to other herpesviruses (68-86%), but with very low geometric mean antibody titres [1:12 to human herpesvirus 6 and 1:14 to Herpesvirus papio (Cercopithecine herpesvirus 12)]. Sequence analysis of the conserved herpesvirus DNA polymerase gene showed that the virus is a member of the lymphocryptovirus subgroup and is most closely related to a lymphocryptovirus from rhesus macaques and is closely related to EBV and Herpesvirus papio. High seroprevalence (79%, with geometric mean antibody titre of 1:110) among 28 common marmosets from two geographically distinct colonies indicated that the virus is likely present in many common marmosets in captivity. A New World primate harbouring a lymphocryptovirus suggests that this subgroup arose much earlier than previously thought.


Subject(s)
Callithrix/virology , Gammaherpesvirinae/classification , Amino Acid Sequence , Animals , Antibodies, Viral/blood , Callithrix/immunology , Cell Line , Cross Reactions , DNA-Directed DNA Polymerase/genetics , Gammaherpesvirinae/genetics , Gammaherpesvirinae/immunology , Leukocytes, Mononuclear/ultrastructure , Leukocytes, Mononuclear/virology , Microscopy, Electron , Molecular Sequence Data , Phylogeny , Sequence Alignment , Seroepidemiologic Studies
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