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1.
Sci Data ; 10(1): 349, 2023 06 02.
Article in English | MEDLINE | ID: mdl-37268638

ABSTRACT

X-ray absorption spectroscopy (XAS) is a premier technique for materials characterization, providing key information about the local chemical environment of the absorber atom. In this work, we develop a database of sulfur K-edge XAS spectra of crystalline and amorphous lithium thiophosphate materials based on the atomic structures reported in Chem. Mater., 34, 6702 (2022). The XAS database is based on simulations using the excited electron and core-hole pseudopotential approach implemented in the Vienna Ab initio Simulation Package. Our database contains 2681 S K-edge XAS spectra for 66 crystalline and glassy structure models, making it the largest collection of first-principles computational XAS spectra for glass/ceramic lithium thiophosphates to date. This database can be used to correlate S spectral features with distinct S species based on their local coordination and short-range ordering in sulfide-based solid electrolytes. The data is openly distributed via the Materials Cloud, allowing researchers to access it for free and use it for further analysis, such as spectral fingerprinting, matching with experiments, and developing machine learning models.

2.
J Chem Phys ; 158(16)2023 Apr 28.
Article in English | MEDLINE | ID: mdl-37096855

ABSTRACT

In this work, we present ænet-PyTorch, a PyTorch-based implementation for training artificial neural network-based machine learning interatomic potentials. Developed as an extension of the atomic energy network (ænet), ænet-PyTorch provides access to all the tools included in ænet for the application and usage of the potentials. The package has been designed as an alternative to the internal training capabilities of ænet, leveraging the power of graphic processing units to facilitate direct training on forces in addition to energies. This leads to a substantial reduction of the training time by one to two orders of magnitude compared to the central processing unit implementation, enabling direct training on forces for systems beyond small molecules. Here, we demonstrate the main features of ænet-PyTorch and show its performance on open databases. Our results show that training on all the force information within a dataset is not necessary, and including between 10% and 20% of the force information is sufficient to achieve optimally accurate interatomic potentials with the least computational resources.

3.
Chem Mater ; 34(15): 6702-6712, 2022 Aug 09.
Article in English | MEDLINE | ID: mdl-35965893

ABSTRACT

Lithium thiophosphates (LPSs) with the composition (Li2S) x (P2S5)1-x are among the most promising prospective electrolyte materials for solid-state batteries (SSBs), owing to their superionic conductivity at room temperature (>10-3 S cm-1), soft mechanical properties, and low grain boundary resistance. Several glass-ceramic (gc) LPSs with different compositions and good Li conductivity have been previously reported, but the relationship among composition, atomic structure, stability, and Li conductivity remains unclear due to the challenges in characterizing noncrystalline phases in experiments or simulations. Here, we mapped the LPS phase diagram by combining first-principles and artificial intelligence (AI) methods, integrating density functional theory, artificial neural network potentials, genetic-algorithm sampling, and ab initio molecular dynamics simulations. By means of an unsupervised structure-similarity analysis, the glassy/ceramic phases were correlated with the local structural motifs in the known LPS crystal structures, showing that the energetically most favorable Li environment varies with the composition. Based on the discovered trends in the LPS phase diagram, we propose a candidate solid-state electrolyte composition, (Li2S) x (P2S5)1-x (x ∼ 0.725), that exhibits high ionic conductivity (>10-2 S cm-1) in our simulations, thereby demonstrating a general design strategy for amorphous or glassy/ceramic solid electrolytes with enhanced conductivity and stability.

4.
Nat Commun ; 12(1): 7012, 2021 Dec 01.
Article in English | MEDLINE | ID: mdl-34853301

ABSTRACT

The prediction of temperature effects from first principles is computationally demanding and typically too approximate for the engineering of high-temperature processes. Here, we introduce a hybrid approach combining zero-Kelvin first-principles calculations with a Gaussian process regression model trained on temperature-dependent reaction free energies. We apply this physics-based machine-learning model to the prediction of metal oxide reduction temperatures in high-temperature smelting processes that are commonly used for the extraction of metals from their ores and from electronics waste and have a significant impact on the global energy economy and greenhouse gas emissions. The hybrid model predicts accurate reduction temperatures of unseen oxides, is computationally efficient, and surpasses in accuracy computationally much more demanding first-principles simulations that explicitly include temperature effects. The approach provides a general paradigm for capturing the temperature dependence of reaction free energies and derived thermodynamic properties when limited experimental reference data is available.

5.
J Chem Phys ; 155(7): 074801, 2021 Aug 21.
Article in English | MEDLINE | ID: mdl-34418919

ABSTRACT

Machine-learning potentials (MLPs) trained on data from quantum-mechanics based first-principles methods can approach the accuracy of the reference method at a fraction of the computational cost. To facilitate efficient MLP-based molecular dynamics and Monte Carlo simulations, an integration of the MLPs with sampling software is needed. Here, we develop two interfaces that link the atomic energy network (ænet) MLP package with the popular sampling packages TINKER and LAMMPS. The three packages, ænet, TINKER, and LAMMPS, are free and open-source software that enable, in combination, accurate simulations of large and complex systems with low computational cost that scales linearly with the number of atoms. Scaling tests show that the parallel efficiency of the ænet-TINKER interface is nearly optimal but is limited to shared-memory systems. The ænet-LAMMPS interface achieves excellent parallel efficiency on highly parallel distributed-memory systems and benefits from the highly optimized neighbor list implemented in LAMMPS. We demonstrate the utility of the two MLP interfaces for two relevant example applications: the investigation of diffusion phenomena in liquid water and the equilibration of nanostructured amorphous battery materials.

7.
J Comput Aided Mol Des ; 35(4): 557-586, 2021 04.
Article in English | MEDLINE | ID: mdl-33034008

ABSTRACT

Atomistic simulations have become an invaluable tool for industrial applications ranging from the optimization of protein-ligand interactions for drug discovery to the design of new materials for energy applications. Here we review recent advances in the use of machine learning (ML) methods for accelerated simulations based on a quantum mechanical (QM) description of the system. We show how recent progress in ML methods has dramatically extended the applicability range of conventional QM-based simulations, allowing to calculate industrially relevant properties with enhanced accuracy, at reduced computational cost, and for length and time scales that would have otherwise not been accessible. We illustrate the benefits of ML-accelerated atomistic simulations for industrial R&D processes by showcasing relevant applications from two very different areas, drug discovery (pharmaceuticals) and energy materials. Writing from the perspective of both a molecular and a materials modeling scientist, this review aims to provide a unified picture of the impact of ML-accelerated atomistic simulations on the pharmaceutical, chemical, and materials industries and gives an outlook on the exciting opportunities that could emerge in the future.


Subject(s)
Drug Discovery , Machine Learning , Quantum Theory , Drug Design , Drug Discovery/methods , Ligands , Models, Molecular , Pharmaceutical Preparations/chemistry
8.
Nat Commun ; 10(1): 592, 2019 02 05.
Article in English | MEDLINE | ID: mdl-30723202

ABSTRACT

Structure plays a vital role in determining materials properties. In lithium ion cathode materials, the crystal structure defines the dimensionality and connectivity of interstitial sites, thus determining lithium ion diffusion kinetics. In most conventional cathode materials that are well-ordered, the average structure as seen in diffraction dictates the lithium ion diffusion pathways. Here, we show that this is not the case in a class of recently discovered high-capacity lithium-excess rocksalts. An average structure picture is no longer satisfactory to understand the performance of such disordered materials. Cation short-range order, hidden in diffraction, is not only ubiquitous in these long-range disordered materials, but fully controls the local and macroscopic environments for lithium ion transport. Our discovery identifies a crucial property that has previously been overlooked and provides guidelines for designing and engineering cation-disordered cathode materials.

9.
J Chem Phys ; 148(24): 241711, 2018 Jun 28.
Article in English | MEDLINE | ID: mdl-29960321

ABSTRACT

The atomistic modeling of amorphous materials requires structure sizes and sampling statistics that are challenging to achieve with first-principles methods. Here, we propose a methodology to speed up the sampling of amorphous and disordered materials using a combination of a genetic algorithm and a specialized machine-learning potential based on artificial neural networks (ANNs). We show for the example of the amorphous LiSi alloy that around 1000 first-principles calculations are sufficient for the ANN-potential assisted sampling of low-energy atomic configurations in the entire amorphous LixSi phase space. The obtained phase diagram is validated by comparison with the results from an extensive sampling of LixSi configurations using molecular dynamics simulations and a general ANN potential trained to ∼45 000 first-principles calculations. This demonstrates the utility of the approach for the first-principles modeling of amorphous materials.

10.
Phys Rev Lett ; 119(17): 176402, 2017 Oct 27.
Article in English | MEDLINE | ID: mdl-29219459

ABSTRACT

Cation disorder is an important design criterion for technologically relevant transition-metal (TM) oxides, such as radiation-tolerant ceramics and Li-ion battery electrodes. In this Letter, we use a combination of first-principles calculations, normal mode analysis, and band-structure arguments to pinpoint a specific electronic-structure effect that influences the stability of disordered phases. We find that the electronic configuration of a TM ion determines to what extent the structural energy is affected by site distortions. This mechanism explains the stability of disordered phases with large ionic radius differences and provides a concrete guideline for the discovery of novel disordered compositions.

11.
Phys Chem Chem Phys ; 18(42): 29561-29570, 2016 Oct 26.
Article in English | MEDLINE | ID: mdl-27748475

ABSTRACT

Water electrolysis is a key technology for the replacement of fossil fuels by environmentally friendly alternatives, but state-of-the-art water oxidation catalysts rely on rare elements such as Pt groups and other noble metals. In this article, we employ first-principles calculations to explore the potential of modified barium titanate (BaTiO3), an inexpensive perovskite oxide that can be synthesized from earth-abundant precursors, for the design of efficient water oxidation electrocatalysts. Our calculations identify Fe and Ni doping as a means to improve the electrical conductivity and to reduce the overpotential required for water oxidation over BaTiO3. Based on computed Pourbaix diagrams and pH/potential-dependent surface phase diagrams, we further show that BaTiO3 is stable under reaction conditions and is not sensitive with respect to poisoning by reaction intermediates and hydrogen adsorption. This proof of concept demonstrates that even minor compositional modifications of existing materials may greatly improve their catalytic activity, a fact that is often neglected when larger composition spaces are screened.

12.
ChemSusChem ; 8(16): 2745-51, 2015 Aug 24.
Article in English | MEDLINE | ID: mdl-26219085

ABSTRACT

The design of catalysts for CO2 reduction is challenging because of the fundamental relationships between the binding energies of the reaction intermediates. Metal carbides have shown promise for transcending these relationships and enabling low-cost alternatives. Herein, we show that directional bonding arising from the mixed covalent/metallic character plays a critical role in governing the surface chemistry. This behavior can be described by consideration of individual d-band components. We use this model to predict efficient catalysts based on tungsten carbide with a sub-monolayer of iron adatoms. Our approach can be used to predict site-preference and binding-energy trends for complex catalyst surfaces.


Subject(s)
Carbon Dioxide/chemistry , Methane/chemistry , Transition Elements/chemistry , Tungsten Compounds/chemistry , Electrochemistry , Oxidation-Reduction
13.
Nano Lett ; 14(5): 2670-6, 2014 May 14.
Article in English | MEDLINE | ID: mdl-24742028

ABSTRACT

The shape, size, and composition of catalyst nanoparticles can have a significant influence on catalytic activity. Understanding such structure-reactivity relationships is crucial for the optimization of industrial catalysts and the design of novel catalysts with enhanced properties. In this letter, we employ a combination of first-principles computations and large-scale Monte-Carlo simulations with highly accurate neural network potentials to study the equilibrium surface structure and composition of bimetallic Au/Cu nanoparticles (NPs), which have recently been of interest as stable and efficient CO2 reduction catalysts. We demonstrate that the inclusion of explicit water molecules at a first-principles level of accuracy is necessary to predict experimentally observed trends in Au/Cu NP surface composition; in particular, we find that Au-coated core-shell NPs are thermodynamically favored in vacuum, independent of Au/Cu chemical potential and NP size, while NPs with mixed Au-Cu surfaces are preferred in aqueous solution. Furthermore, we show that both CO and O2 adsorption energies differ significantly for NPs with the equilibrium surface composition found in water and those with the equilibrium surface composition found in vacuum, suggesting large changes in CO2 reduction activity. Our results emphasize the importance of understanding and being able to predict the effects of catalytic environment on catalyst structure and activity. In addition, they demonstrate that first-principles-based neural network potentials provide a promising approach for accurately investigating the relationships between solvent, surface composition and morphology, surface electronic structure, and catalytic activity in systems composed of thousands of atoms.


Subject(s)
Gold/chemistry , Metal Nanoparticles/chemistry , Solvents/chemistry , Water/chemistry , Catalysis , Neural Networks, Computer , Surface Properties , Thermodynamics
14.
J Chem Phys ; 136(19): 194111, 2012 May 21.
Article in English | MEDLINE | ID: mdl-22612084

ABSTRACT

An accurate determination of the potential energy is the crucial step in computer simulations of chemical processes, but using electronic structure methods on-the-fly in molecular dynamics (MD) is computationally too demanding for many systems. Constructing more efficient interatomic potentials becomes intricate with increasing dimensionality of the potential-energy surface (PES), and for numerous systems the accuracy that can be achieved is still not satisfying and far from the reliability of first-principles calculations. Feed-forward neural networks (NNs) have a very flexible functional form, and in recent years they have been shown to be an accurate tool to construct efficient PESs. High-dimensional NN potentials based on environment-dependent atomic energy contributions have been presented for a number of materials. Still, these potentials may be improved by a more detailed structural description, e.g., in form of atom pairs, which directly reflect the atomic interactions and take the chemical environment into account. We present an implementation of an NN method based on atom pairs, and its accuracy and performance are compared to the atom-based NN approach using two very different systems, the methanol molecule and metallic copper. We find that both types of NN potentials provide an excellent description of both PESs, with the pair-based method yielding a slightly higher accuracy making it a competitive alternative for addressing complex systems in MD simulations.


Subject(s)
Molecular Dynamics Simulation , Neural Networks, Computer , Copper/chemistry , Environment , Methanol/chemistry , Models, Chemical
15.
J Phys Chem A ; 113(10): 2103-8, 2009 Mar 12.
Article in English | MEDLINE | ID: mdl-19115825

ABSTRACT

The structure and dynamics of water confined in model single-wall carbon- and boron-nitride nanotubes (called SWCNT and SWBNNT, respectively) of different diameters have been investigated by molecular dynamics (MD) simulations at room temperature. The simulations were performed on periodically extended nanotubes filled with an amount of water that was determined by soaking a section of the nanotube in a water box in an NpT simulation (1 atm, 298 K). All MD production simulations were performed in the canonical (NVT) ensemble at a temperature of 298 K. Water was described by the extended simple point charge (SPC/E) model. The wall-water interactions were varied, within reasonable limits, to study the effect of a modified hydrophobicity of the pore walls. We report distribution functions for the water in the tubes in spherical and cylindrical coordinates and then look at the single-molecule dynamics, in particular self-diffusion. While this motion is slowed down in narrow tubes, in keeping with previous findings (Liu et al. J. Chem. Phys. 2005, 123, 234701-234707; Liu and Wang. Phys. Rev. 2005, 72, 085420/1-085420/4; Liu et al. Langmuir 2005, 21, 12025-12030) bulk-water like self-diffusion coefficients are found in wider tubes, more or less independently of the wall-water interaction. There may, however, be an anomaly in the self-diffusion for the SWBNNT.

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