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1.
Protein Eng Des Sel ; 30(1): 47-55, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27887026

ABSTRACT

While formate dehydrogenases (FDHs) have been used for cofactor recycling in chemoenzymatic synthesis, the ability of FDH to reduce CO2 could also be utilized in the conversion of CO2 to useful products via formate (HCOO-). In this study, we investigated the reduction of CO2 in the form of hydrogen carbonate (HCO3-) to formate by FDHs from Candida methylica (CmFDH) and Chaetomium thermophilum (CtFDH) in a NADH-dependent reaction. The catalytic performance with HCO3- as a substrate was evaluated by measuring the kinetic rates and conducting productivity assays. CtFDH showed a higher efficiency in converting HCO3- to formate than CmFDH, whereas CmFDH was better in the oxidation of formate. The pH optimum of the reduction was at pH 7-8. However, the high concentrations of HCO3- reduced the reaction rate. CtFDH was modeled in the presence of HCO3- showing that it fits to the active site. The active site setting for hydride transfer in CO2 reduction was modeled. The hydride donated by NADH would form a favorable contact to the carbon atom of HCO3-, resulting in a surplus of electrons within the molecule. This would cause the complex formed by hydrogen carbonate and the hydride to break into formate and hydroxide ions.


Subject(s)
Bicarbonates/metabolism , Chaetomium/enzymology , Formate Dehydrogenases/metabolism , Formates/metabolism , Biotransformation , Catalytic Domain , Formate Dehydrogenases/chemistry , Formate Dehydrogenases/genetics , Kinetics , Models, Molecular , Oxidation-Reduction , Protein Engineering , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
2.
Extremophiles ; 20(4): 515-24, 2016 Jul.
Article in English | MEDLINE | ID: mdl-27240671

ABSTRACT

The gene of Thermotoga maritima GH10 xylanase (TmXYN10B) was synthesised to study the extreme limits of this hyperthermostable enzyme at high temperatures in the presence of biomass-dissolving hydrophilic ionic liquids (ILs). TmXYN10B expressed from Pichia pastoris showed maximal activity at 100 °C and retained 92 % of maximal activity at 105 °C in a 30-min assay. Although the temperature optimum of activity was lowered by 1-ethyl-3-methylimidazolium acetate ([EMIM]OAc), TmXYN10B retained partial activity in 15-35 % hydrophilic ILs, even at 75-90 °C. TmXYN10B retained over 80 % of its activity at 90 °C in 15 % [EMIM]OAc and 15-25 % 1-ethyl-3-methylimidazolium dimethylphosphate ([EMIM]DMP) during 22-h reactions. [EMIM]OAc may rigidify the enzyme and lower V max. However, only minor changes in kinetic parameter K m showed that competitive inhibition by [EMIM]OAc of TmXYN10B is minimal. In conclusion, when extended enzymatic reactions under extreme conditions are required, TmXYN10B shows extraordinary potential.


Subject(s)
Bacterial Proteins/metabolism , Endo-1,4-beta Xylanases/metabolism , Hot Temperature , Ionic Liquids/pharmacology , Thermotoga maritima/enzymology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/genetics , Biomass , Endo-1,4-beta Xylanases/antagonists & inhibitors , Endo-1,4-beta Xylanases/genetics , Enzyme Inhibitors/pharmacology , Enzyme Stability , Industrial Microbiology , Pichia/genetics , Pichia/growth & development , Pichia/metabolism , Thermotoga maritima/genetics
3.
Appl Biochem Biotechnol ; 179(3): 474-84, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26852025

ABSTRACT

Chiral α-hydroxy acids (AHAs) are rapidly becoming important synthetic building blocks, in particular for the production of pharmaceuticals and other fine chemicals. Chiral compounds of a variety of functionalities are now often derived using enzymes, and L-lactate dehydrogenase from the thermophilic organism Geobacillus stearothermophilus (bsLDH) has the potential to be employed for the industrial synthesis of chiral α-hydroxy acids. Despite the thorough characterization of this enzyme, generation of variants with high activity on non-natural substrates has remained difficult and therefore limits the use of bsLDH in industry. Here, we present the engineering of bsLDH using semi-rational design as a method of focusing screening in a small and smart library for novel biocatalysts. In this study, six mutant libraries were designed in an effort to expand the substrate range of bsLDH. The eight variants identified as having enhanced activity toward the selected α-keto acids belonged to the same library, which targeted two positions simultaneously. These new variants now may be useful biocatalysts for chiral synthesis of α-hydroxy acids.


Subject(s)
Geobacillus stearothermophilus/enzymology , Hydroxy Acids/metabolism , L-Lactate Dehydrogenase/genetics , L-Lactate Dehydrogenase/metabolism , Binding Sites , Escherichia coli/genetics , Hydroxy Acids/chemistry , L-Lactate Dehydrogenase/chemistry , Mutagenesis, Site-Directed , Mutation , Protein Engineering , Substrate Specificity
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