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1.
Commun Biol ; 6(1): 48, 2023 01 13.
Article in English | MEDLINE | ID: mdl-36639722

ABSTRACT

N-glycosylation is implicated in cancers and aberrant N-glycosylation is recognized as a hallmark of cancer. Here, we mapped and compared the site-specific N-glycoproteomes of colon cancer HCT116 cells and isogenic non-tumorigenic DNMT1/3b double knockout (DKO1) cells using Fbs1-GYR N-glycopeptide enrichment technology and trapped ion mobility spectrometry. Many significant changes in site-specific N-glycosylation were revealed, providing a molecular basis for further elucidation of the role of N-glycosylation in protein function. HCT116 cells display hypersialylation especially in cell surface membrane proteins. Both HCT116 and DKO1 show an abundance of paucimannose and 80% of paucimannose-rich proteins are annotated to reside in exosomes. The most striking N-glycosylation alteration was the degree of mannose-6-phosphate (M6P) modification. N-glycoproteomic analyses revealed that HCT116 displays hyper-M6P modification, which was orthogonally validated by M6P immunodetection. Significant observed differences in N-glycosylation patterns of the major M6P receptor, CI-MPR in HCT116 and DKO1 may contribute to the hyper-M6P phenotype of HCT116 cells. This comparative site-specific N-glycoproteome analysis provides a pool of potential N-glycosylation-related cancer biomarkers, but also gives insights into the M6P pathway in cancer.


Subject(s)
Mannosephosphates , Neoplasms , Humans , Glycosylation , Mannosephosphates/chemistry , Mannosephosphates/metabolism , Neoplasms/genetics
2.
Life Sci Alliance ; 4(8)2021 08.
Article in English | MEDLINE | ID: mdl-34168074

ABSTRACT

SARS-CoV-2 infection poses a global health crisis. In parallel with the ongoing world effort to identify therapeutic solutions, there is a critical need for improvement in the prognosis of COVID-19. Here, we report plasma proteome fingerprinting that predict high (hospitalized) and low-risk (outpatients) cases of COVID-19 identified by a platform that combines machine learning with matrix-assisted laser desorption ionization mass spectrometry analysis. Sample preparation, MS, and data analysis parameters were optimized to achieve an overall accuracy of 92%, sensitivity of 93%, and specificity of 92% in dataset without feature selection. We identified two distinct regions in the MALDI-TOF profile belonging to the same proteoforms. A combination of SDS-PAGE and quantitative bottom-up proteomic analysis allowed the identification of intact and truncated forms of serum amyloid A-1 and A-2 proteins, both already described as biomarkers for viral infections in the acute phase. Unbiased discrimination of high- and low-risk COVID-19 patients using a technology that is currently in clinical use may have a prompt application in the noninvasive prognosis of COVID-19. Further validation will consolidate its clinical utility.


Subject(s)
COVID-19/diagnosis , Machine Learning , Proteome/metabolism , Proteomics/methods , SARS-CoV-2/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Adult , Aged , Biomarkers/blood , COVID-19/epidemiology , COVID-19/virology , Female , Humans , Male , Middle Aged , Pandemics , Prognosis , Reproducibility of Results , SARS-CoV-2/physiology , Sensitivity and Specificity , Serum Amyloid A Protein/analysis
3.
J Ethnopharmacol ; 253: 112655, 2020 May 10.
Article in English | MEDLINE | ID: mdl-32045681

ABSTRACT

ETHNOPHARMACOLOGICAL RELEVANCE: Species Cissus gongylodes has been used in the traditional medicine in South America and India for the treatment of urolithiasis, biliary and inflammatory problems without any scientific evidence. AIM OF THE STUDY: This work was developed to investigate for the first time the anti-inflammatory and anti-urolithiatic activities of leaf decoction of C. gongylodes. MATERIALS AND METHODS: Decoction was subjected to anti-inflammatory evaluation by the in vivo assay of ear oedema and quantification of the main mediators of inflammation PGE2 and LTB4, and the cytokine TNF-α. The decoction's anti-urolithiatic activity was determined by different in vitro assays to evaluate the inhibition and dissolution of the most prevalent types of kidney stones: calcium oxalate (CaOx) and struvite. Diffusion in gel technique and fresh urine of a patient with renal stone were used to investigate the inhibition and dissolution of CaOx, respectively, and the single diffusion gel growth technique was used to evaluate the inhibition and dissolution of struvite crystals. The decoction was chemically characterized by UHPLC-ESI-HRMS analysis. RESULTS: Decoction showed in vivo anti-inflammatory activity by potent decreasing the level of both the main mediators of inflammation and dose-dependent in vitro anti-urolithiatic action by inhibition and dissolution of both type of crystals, CaOx and struvite. CONCLUSIONS: Results obtained corroborate the reports of the traditional use of the decoction of Cissus gongylodes. Besides, it showed multi-target mechanisms actions, inhibition of the main inflammatory pathways, and inhibition/dissolution of the most prevalent types of crystals on urolithiasis. These actions make the decoction a promissory source to the development of new and more efficient drugs.


Subject(s)
Anti-Inflammatory Agents/therapeutic use , Cissus , Edema/drug therapy , Kidney Calculi/drug therapy , Plant Extracts/therapeutic use , Animals , Anti-Inflammatory Agents/chemistry , Calcium Oxalate/chemistry , Croton Oil , Crystallization , Dinoprostone/metabolism , Edema/chemically induced , Edema/metabolism , Humans , Kidney Calculi/chemistry , Leukotriene B4/metabolism , Male , Mice , Plant Extracts/chemistry , Plant Leaves , Struvite/chemistry , Tumor Necrosis Factor-alpha/metabolism
4.
Front Microbiol ; 7: 940, 2016.
Article in English | MEDLINE | ID: mdl-27379069

ABSTRACT

Candida haemulonii is now considered a complex of two species and one variety: C. haemulonii sensu stricto, Candida duobushaemulonii and the variety C. haemulonii var. vulnera. Identification (ID) of these species is relevant for epidemiological purposes and for therapeutic management, but the different phenotypic commercial systems are unable to provide correct species ID for these emergent pathogens. Hence, we evaluated the MALDI-TOF MS performance for the ID of C. haemulonii species, analyzing isolates/strains of C. haemulonii complex species, Candida pseudohaemulonii and Candida auris by two commercial platforms, their databases and softwares. To differentiate C. haemulonii sensu sctricto from the variety vulnera, we used the ClinProTools(TM) models and a single-peak analysis with the software FlexAnalysis(TM). The Biotyper(TM) database gave 100% correct species ID for C. haemulonii sensu stricto, C. pseudohaemulonii and C. auris, with 69% of correct species ID for C. duobushaemulonii. Vitek MS(TM) IVD database gave 100% correct species ID for C. haemulonii sensu stricto, misidentifying all C. duobushaemulonii and C. pseudohaemulonii as C. haemulonii, being unable to identify C. auris. The Vitek MS(TM) RUO database needed to be upgraded with in-house SuperSpectra to discriminate C. haemulonii sensu stricto, C. duobushaemulonii, C. pseudohaemulonii, and C. auris strains/isolates. The generic algorithm model from ClinProTools(TM) software showed recognition capability of 100% and cross validation of 98.02% for the discrimination of C. haemulonii sensu stricto from the variety vulnera. Single-peak analysis showed that the peaks 5670, 6878, or 13750 m/z can distinguish C. haemulonii sensu stricto from the variety vulnera.

5.
Bioorg Med Chem Lett ; 26(5): 1485-9, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26848109

ABSTRACT

The human tissue kallikreins (KLK1-KLK15) comprise a family of 15 serine peptidases detected in almost every tissue of the human body and that actively participate in many physiological and pathological events. Some kallikreins are involved in diseases for which no effective therapy is available, as for example, epithelial disorders, bacterial infections and in certain cancers metastatic processes. In recent years our group have made efforts to find inhibitors for all kallikreins, based on natural products and synthetic molecules, and all the inhibitors developed by our group presented a competitive mechanism of inhibition. Here we describe fukugetin, a natural product that presents a mixed-type mechanism of inhibition against KLK1 and KLK2. This type of inhibitor is gaining importance today, especially for the development of exosite-type inhibitors, which present potential to selectively inhibit the enzyme activity only against specific substrate.


Subject(s)
Biflavonoids/pharmacology , Biological Products/pharmacology , Serine Proteinase Inhibitors/pharmacology , Tissue Kallikreins/antagonists & inhibitors , Biflavonoids/chemistry , Biflavonoids/isolation & purification , Biological Products/chemistry , Biological Products/isolation & purification , Dose-Response Relationship, Drug , Garcinia/chemistry , Humans , Models, Molecular , Molecular Conformation , Serine Proteinase Inhibitors/chemistry , Serine Proteinase Inhibitors/isolation & purification , Structure-Activity Relationship , Tissue Kallikreins/metabolism
6.
Biochem Pharmacol ; 97(2): 203-14, 2015 Sep 15.
Article in English | MEDLINE | ID: mdl-26235942

ABSTRACT

Phosphorylated kininogen and some of its fragments containing serine phosphorylated bradykinin ([pS(6)]-Bk) were identified in human serum and plasma by a phosphoproteomic approach. We report the kininogenase ability of human tissue and plasma kallikreins and tryptase to generate [pS(6)]-Bk or Lys-[pS(6)]-Bk having as substrate the synthetic human kininogen fluorescent fragment Abz-MISLMKRPPGF[pS(386)]PFRSSRI-NH2. The pharmacological assays of [pS(6)]-Bk showed it as a full B2 bradykinin receptor agonist in smooth muscle, it produces a portal liver hypertensive response in rat and mouse paw edema that lasts longer than Bk. The rat hypotensive response to infusions of Bk is greater than that of [pS(6)]Bk, both if injected through femoral vein or aorta. [pS(6)]-Bk was more resistant than Bk to kininase digestion performed with angiotensin converting enzyme, neprilysin, thimet oligopeptidase, aminopeptidase P and carboxypeptidase M. (1)H-NMR experiments indicated that [pS(6)]-Bk has lower flexibility, with the pS(6)-P(7) bond restricted to the trans conformation, and can explain [pS(6)]-Bk resistance to hydrolysis. In conclusion, [pS(6)]-Bk presenting lower activity than Bk, with longer lasting effects and being slowly released by kininogenases from synthetic Abz-MISLMKRPPGF[pS(386)]PFRSSRI-NH2, suggests that phosphorylation of the kininogens can be an efficient kallikrein-kinin system regulator.


Subject(s)
Bradykinin/analogs & derivatives , Bradykinin/pharmacology , Peptide Hydrolases/pharmacology , Amino Acid Sequence , Animals , Blood Pressure/drug effects , Blood Pressure/physiology , Bradykinin/genetics , Guinea Pigs , Humans , Hydrolysis/drug effects , Mice , Molecular Sequence Data , Organ Culture Techniques , Peptide Hydrolases/genetics , Rabbits , Rats , Rats, Sprague-Dawley , Rats, Wistar
7.
J Antimicrob Chemother ; 69(8): 2132-6, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24722840

ABSTRACT

OBJECTIVES: Recently, matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOF MS) was successfully applied for the detection of carbapenemase activity directly from Gram-negative colonies. Based on this principle, we evaluated the performance of MALDI-TOF MS for rapid detection of carbapenemase activity directly from positive blood culture vials. METHODS: A total of 100 blood culture vials were randomly selected. MALDI-TOF MS carbapenemase assay results were confirmed by the detection of carbapenemase-encoding genes. RESULTS: A total of 110 bacterial isolates were recovered. The MALDI-TOF MS carbapenemase assay identified 21 of 29 (72.4%) of the carbapenemase-producing isolates directly from the blood culture vials, especially those encoding KPC-2 (100%) and SPM-1 (100%), after a 4 h incubation period. Although the majority of OXA-23-producing Acinetobacter baumannii isolates were not identified on day 1, all isolates were identified as carbapenemase producers directly from the colony on the next day. CONCLUSIONS: The MALDI-TOF MS carbapenemase assay is a feasible and rapid test to identify carbapenemase activity directly from blood culture vials. It may contribute to faster readjustment of empirical antimicrobial therapy and implementation of infection control measures.


Subject(s)
Bacterial Proteins/blood , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , beta-Lactamases/blood , Acinetobacter baumannii/enzymology , Acinetobacter baumannii/isolation & purification , Humans , Klebsiella pneumoniae/enzymology , Klebsiella pneumoniae/isolation & purification , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/isolation & purification
8.
Diagn Microbiol Infect Dis ; 76(1): 80-5, 2013 May.
Article in English | MEDLINE | ID: mdl-23478032

ABSTRACT

We investigated the antimicrobial resistance profile and the occurrence of Klebsiella pneumoniae carbapenemase (KPC)-producing Gram-negative rods in sewage samples obtained from a Brazilian teaching hospital and from the wastewater treatment plant (WWTP) that receives it for treatment. We identified multidrug-resistant bacteria as well as KPC-2-producing Aeromonas spp. and several Enterobacteriaceae species, including Kluyvera spp., in the hospital effluent and in different sites of the WWTP. Most isolates showed the blaKPC-2 gene harbored on a transposon that was carried by conjugative plasmids. The presence of KPC production among Aeromonas spp., Kluyvera spp., and other Enterobacteriaceae indicates the adaptability of such isolates to aquatic environments, not only in the hospital effluent but also throughout the WWTP. Although secondary treatment seems to decrease the amount of KPC producers in sewage, multidrug-resistant isolates are continually disposed in the urban river. Thus, sewage treatment regulations are urgently needed to decelerate the evolution of antimicrobial resistance beyond hospitals.


Subject(s)
Aeromonas/isolation & purification , Bacterial Proteins/genetics , Drug Resistance, Multiple, Bacterial , Enterobacteriaceae/isolation & purification , Kluyvera/isolation & purification , Sewage/microbiology , beta-Lactamases/genetics , Acinetobacter/drug effects , Acinetobacter/isolation & purification , Aeromonas/drug effects , Brazil , DNA Transposable Elements , Enterobacteriaceae/drug effects , Hospitals, Teaching , Kluyvera/drug effects , Microbial Sensitivity Tests , Plasmids/genetics , Pseudomonas/drug effects , Pseudomonas/isolation & purification
9.
Mol Biochem Parasitol ; 187(2): 111-6, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23354130

ABSTRACT

We studied the substrate specificity requirements of recombinant cysteine peptidases from Plasmodium falciparum, falcipain-2 (FP-2) and falcipain-3 (FP-3), using fluorescence resonance energy transfer (FRET) peptides as substrates. Systematic modifications were introduced in the lead sequence Abz-KLRSSKQ-EDDnp (Abz=ortho-aminobenzoic acid; EDDnp=N-[2,4-dinitrophenyl]ethylenediamine) resulting in five series assayed to map S3-S'2 subsite specificity. Despite high sequence identity and structural similarity between FP-2 and FP-3, noteworthy differences in substrate specificity were observed. The S1 subsite of FP-2 preferentially accommodates peptides containing the positively charged residue Arg in P1, while FP-3 has a clear preference for the hydrophobic residue Leu in this position. The S2 subsite of FP-2 and FP-3 presents a strict specificity for hydrophobic residues, with Leu being the residue preferred by both enzymes. FP-2 did not show preference for the residues present at P3, while FP-3 hydrolysed the peptide Abz-ALRSSRQ-EDDnp, containing Ala at P3, with the highest catalytic efficiency of all series studied. FP-2 has high susceptibility for substrates containing hydrophobic residues in P'1, while FP-3 accommodates well peptides containing Arg in this position. The S'2 subsite of both enzymes demonstrated broad specificity. In addition, radioimmunoassay experiments indicated that kinins can be generated by FP-2 and FP-3 proteolysis of high molecular weight kininogen (HK). Both enzymes excised Met-Lys-bradykinin, Lys-bradykinin and bradykinin from the fluorogenic peptide Abz-MISLMKRPPGFSPFRSSRI-NH2, which corresponds to the Met(375) to Ile(393) sequence of HK. The capability of FP-2 and FP-3 to release kinins suggests the involvement of these enzymes in the modulation of malaria pathophysiology.


Subject(s)
Cysteine Endopeptidases/metabolism , Kallikreins/metabolism , Plasmodium falciparum/enzymology , Kininogens/metabolism , Kinins/metabolism , Substrate Specificity
10.
Biochimie ; 95(2): 215-23, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23000319

ABSTRACT

Transthyretin (TTR) is a plasma protein transporter of thyroxine (T(4)) and retinol and also has peptidase activity. In order to characterize TTR peptidase activity we used fluorescence resonance energy transfer (FRET) peptides derived from Abz-KLRSSK-Q-EDDnp and from two portion-mixing libraries as substrates. Most of the susceptible FRET peptides were cleaved at more than one peptide bond, without particular substrate specificity. The more relevant observation was that the peptides containing E or D were cleaved at only one peptide bond and TTR was competitively inhibited by glutathione analog peptide γ-E-A-G-OH that contains two free carboxyl groups. The dependence on ionic interactions of TTR hydrolytic activity was confirmed by the large inhibitory effects of salt and ionic surfactants. TTR was not inhibited by any usual peptidase inhibitors, except by ortho-phenanthroline and EDTA. The mechanism of TTR catalysis was explored by the pH-profile of TTR hydrolytic activity in different temperatures and by proton inventory. The obtained pK and heat of ionization values suggest that a carboxylate and an ammonium group, possibly from a lysine side chain are involved. These results support the recently proposed inducible metalloprotease mechanism for TTR based on its 3D structure in presence of Zn(2+) and a series of point mutations [Liz et al., Biochem. J 443 (2012) 769-778].


Subject(s)
Lysine/chemistry , Prealbumin/chemistry , Protons , Amino Acid Sequence , Combinatorial Chemistry Techniques , Edetic Acid/chemistry , Fluorescence Resonance Energy Transfer , Humans , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Molecular Sequence Data , Peptide Library , Phenanthrolines/chemistry , Protease Inhibitors/chemistry , Solid-Phase Synthesis Techniques , Substrate Specificity , Surface-Active Agents/chemistry , Temperature
11.
J Bone Miner Res ; 28(3): 688-99, 2013 Mar.
Article in English | MEDLINE | ID: mdl-22991293

ABSTRACT

X-linked hypophosphatemia (XLH/HYP)-with renal phosphate wasting, hypophosphatemia, osteomalacia, and tooth abscesses-is caused by mutations in the zinc-metallopeptidase PHEX gene (phosphate-regulating gene with homologies to endopeptidase on the X chromosome). PHEX is highly expressed by mineralized tissue cells. Inactivating mutations in PHEX lead to distal renal effects (implying accumulation of a secreted, circulating phosphaturic factor) and accumulation in bone and teeth of mineralization-inhibiting, acidic serine- and aspartate-rich motif (ASARM)-containing peptides, which are proteolytically derived from the mineral-binding matrix proteins of the SIBLING family (small, integrin-binding ligand N-linked glycoproteins). Although the latter observation suggests a local, direct matrix effect for PHEX, its physiologically relevant substrate protein(s) have not been identified. Here, we investigated two SIBLING proteins containing the ASARM motif-osteopontin (OPN) and bone sialoprotein (BSP)-as potential substrates for PHEX. Using cleavage assays, gel electrophoresis, and mass spectrometry, we report that OPN is a full-length protein substrate for PHEX. Degradation of OPN was essentially complete, including hydrolysis of the ASARM motif, resulting in only very small residual fragments. Western blotting of Hyp (the murine homolog of human XLH) mouse bone extracts having no PHEX activity clearly showed accumulation of an ∼35 kDa OPN fragment that was not present in wild-type mouse bone. Immunohistochemistry and immunogold labeling (electron microscopy) for OPN in Hyp bone likewise showed an accumulation of OPN and/or its fragments compared with normal wild-type bone. Incubation of Hyp mouse bone extracts with PHEX resulted in the complete degradation of these fragments. In conclusion, these results identify full-length OPN and its fragments as novel, physiologically relevant substrates for PHEX, suggesting that accumulation of mineralization-inhibiting OPN fragments may contribute to the mineralization defect seen in the osteomalacic bone characteristic of XLH/HYP.


Subject(s)
Bone and Bones/metabolism , Familial Hypophosphatemic Rickets/metabolism , Genetic Diseases, X-Linked , Osteopontin/metabolism , PHEX Phosphate Regulating Neutral Endopeptidase/metabolism , Amino Acid Sequence , Animals , Blotting, Western , Disease Models, Animal , Electrophoresis, Polyacrylamide Gel , Immunohistochemistry , Mass Spectrometry , Mice , Molecular Sequence Data , Osteopontin/chemistry , Proteolysis
12.
J Clin Microbiol ; 51(1): 287-90, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23100344

ABSTRACT

This study evaluates the accuracy of liquid chromatography-mass spectrometry (LC-MS) and matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF) for detecting carbapenem hydrolytic activity among SPM-1-, GIM-1-, and GES-5-producing Pseudomonas aeruginosa isolates and OXA-143-, IMP-10-, and OXA-58-producing Acinetobacter baumannii isolates. Class A and B carbapenemase activities were rapidly detected by MALDI-TOF in a 2-h assay. However, an extended incubation time was necessary for detection of carbapenem-hydrolyzing class D ß-lactamase (CHDL) activity in Acinetobacter spp.


Subject(s)
Acinetobacter baumannii/chemistry , Acinetobacter baumannii/enzymology , Bacteriological Techniques/methods , Pseudomonas aeruginosa/chemistry , Pseudomonas aeruginosa/enzymology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , beta-Lactamases/metabolism , Acinetobacter baumannii/isolation & purification , Humans , Pseudomonas aeruginosa/isolation & purification
13.
J Endocrinol ; 214(2): 217-24, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22653842

ABSTRACT

Leptin is a 16  kDa hormone mainly produced by adipocytes that plays an important role in many biological events including the regulation of appetite and energy balance, atherosclerosis, osteogenesis, angiogenesis, the immune response, and inflammation. The search for proteolytic enzymes capable of processing leptin prompted us to investigate the action of cysteine cathepsins on human leptin degradation. In this study, we observed high cysteine peptidase expression and hydrolytic activity in white adipose tissue (WAT), which was capable of degrading leptin. Considering these results, we investigated whether recombinant human cysteine cathepsins B, K, L, and S were able to degrade human leptin. Mass spectrometry analysis revealed that among the tested enzymes, cathepsin S exhibited the highest catalytic activity on leptin. Furthermore, using a Matrigel assay, we observed that the leptin fragments generated by cathepsin S digestion did not exhibit angiogenic action on endothelial cells and were unable to inhibit food intake in Wistar rats after intracerebroventricular administration. Taken together, these results suggest that cysteine cathepsins may be putative leptin activity regulators in WAT.


Subject(s)
Cathepsins/metabolism , Leptin/antagonists & inhibitors , Leptin/metabolism , Protein Processing, Post-Translational , Adipose Tissue, White/enzymology , Adipose Tissue, White/metabolism , Amino Acid Sequence , Angiogenesis Inducing Agents/pharmacology , Animals , Catalytic Domain , Cathepsins/physiology , Cells, Cultured , Cysteine Proteases/metabolism , Cysteine Proteases/physiology , Human Umbilical Vein Endothelial Cells/drug effects , Human Umbilical Vein Endothelial Cells/enzymology , Human Umbilical Vein Endothelial Cells/metabolism , Human Umbilical Vein Endothelial Cells/physiology , Humans , Leptin/chemistry , Leptin/pharmacology , Male , Mass Spectrometry , Molecular Sequence Data , Rats , Rats, Wistar , Recombinant Proteins/metabolism
14.
Mol Biochem Parasitol ; 184(2): 82-9, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22569587

ABSTRACT

In this study we investigated the peptidase activity in Leishmania (L.) amazonensis live amastigote by confocal microscopy using peptidyl-MCA as substrates, the hydrolysis of which releases the MCA fluorophore inside the cells. Cell pre-treatment with peptidase inhibitors indicated the presence of cysteine and serine peptidases. It was noteworthy that Leishmania amastigotes incorporate only substrates (Z-FR-MCA, Z-RR-MCA) or inhibitors (E64, TLCK) containing positively charged groups. The peptidase activities in the supernatants of amastigotes and promastigotes lysates were also evaluated with the same peptidyl-MCA substrates and inhibitors in the pH range 4.5-9.0. The effects of temperature and different salts were also included in this study. The hydrolytic activities of supernatants on Z-FR-MCA clearly indicate the presence of different cysteine peptidases that adapted to work in different environment conditions. Intact Leishmania cells incorporated Z-RR-MCA, the hydrolysis of which was inhibited only by TLCK indicating the presence of at least one serine peptidase. The pH profile of Z-RR-MCA hydrolysis by amastigotes and promastigotes lysate supernatants, and the hydrolysis time course of the FRET peptide Abz-AGRRRAQ-EDDnp at RA bond, followed by removal of the two C-termini R to yield Abz-AGR-OH that is a unique characteristic of oligopeptidase B, indicate its presence in the parasite.


Subject(s)
Leishmania/enzymology , Peptide Hydrolases/metabolism , Protozoan Proteins/metabolism , Amino Acid Sequence , Animals , Citrates/chemistry , Cricetinae , Cysteine Proteinase Inhibitors/pharmacology , Hydrogen-Ion Concentration , Leishmania/cytology , Leucine/analogs & derivatives , Leucine/pharmacology , Mesocricetus , Oligopeptides/chemistry , Pepstatins/pharmacology , Peptide Hydrolases/chemistry , Proteolysis , Protozoan Proteins/chemistry , Salinity , Serine Proteinase Inhibitors/pharmacology , Sodium Citrate , Sulfates/chemistry , Temperature , Tosyllysine Chloromethyl Ketone/pharmacology
15.
Malar J ; 11: 156, 2012 May 07.
Article in English | MEDLINE | ID: mdl-22564457

ABSTRACT

BACKGROUND: The malaria burden remains a major public health concern, especially in sub-Saharan Africa. The complex biology of Plasmodium, the apicomplexan parasite responsible for this disease, challenges efforts to develop new strategies to control the disease. Proteolysis is a fundamental process in the metabolism of malaria parasites, but roles for proteases in generating vasoactive peptides have not previously been explored. RESULTS: In the present work, it was demonstrated by mass spectrometry analysis that Plasmodium parasites (Plasmodium chabaudi and Plasmodium falciparum) internalize and process plasma kininogen, thereby releasing vasoactive kinins (Lys-BK, BK and des-Arg9-BK) that may mediate haemodynamic alterations during acute malaria. In addition, it was demonstrated that the P. falciparum cysteine proteases falcipain-2 and falcipain-3 generated kinins after incubation with human kininogen, suggesting that these enzymes have an important role in this process. The biologic activity of peptides released by Plasmodium parasites was observed by measuring ileum contraction and activation of kinin receptors (B1 and B2) in HUVEC cells; the peptides elicited an increase in intracellular calcium, measured by Fluo-3 AM fluorescence. This effect was suppressed by the specific receptor antagonists Des-Arg9[Leu8]-BK and HOE-140. CONCLUSIONS: In previously undescribed means of modulating host physiology, it was demonstrated that malaria parasites can generate active kinins by proteolysis of plasma kininogen.


Subject(s)
Cysteine Endopeptidases/metabolism , Kininogens/metabolism , Kinins/metabolism , Plasmodium chabaudi/enzymology , Plasmodium falciparum/enzymology , Animals , Calcium/metabolism , Endothelial Cells/drug effects , Endothelial Cells/metabolism , Guinea Pigs , Humans , Ileum/drug effects , Mass Spectrometry , Muscle Contraction/drug effects , Plasmodium chabaudi/metabolism , Plasmodium falciparum/metabolism , Proteolysis
16.
Biochimie ; 94(3): 711-8, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22085639

ABSTRACT

Foot and mouth disease virus expresses its genetic information as a single polyprotein that is translated from the single-stranded RNA genome. Proteinases contained within the polyprotein then generate the mature viral proteins. The leader protease (Lb(pro)) performs the initial cleavage by freeing itself from the growing polypeptide chain; subsequently, Lb(pro) cleaves the two homologues of the host cell protein eukaryotic initiation factor 4G (eIF4G). We showed that Lb(pro) possesses specific binding sites at the non prime side from S(1) down to S(7) [Santos et al. (2009) Biochemistry, 48, 7948-7958]. Here, we demonstrate that Lb(pro) has high prime side specificity at least down to the S'(5) site. Lb(pro) is thus not only one of the smallest papain-like cysteine peptidases but also one of the most specific. It can still however cleave between both K↓G and G↓R pairs. We further determined the two-step irreversible inhibition (E + I ↔ EI→ E - I) kinetic parameters of two known irreversible epoxide-based inhibitors of cysteine proteinases, E64 and CA074 on Lb(pro) that show for the reversible step (E + I ↔ EI) K(i) = 3.4 µM and 11.6 µM, and for the irreversible step (EI→E-I) k(4) = 0.16 and 0.06 min(-1), respectively. Knowledge of the Lb(pro) specificity led us to extend E64 by addition of the dipeptide R-P. This compound, termed E64-R-P-NH(2), irreversibly inhibited Lb(pro) with a K(i) = 30 nM and k(4) = 0.01 min(-1) and can serve as the basis for design of specific inhibitors of FMDV replication.


Subject(s)
Cysteine Proteases/metabolism , Foot-and-Mouth Disease/enzymology , Protease Inhibitors/chemical synthesis , Animals , Cathepsins/metabolism , Cysteine Proteases/chemistry , Eukaryotic Initiation Factor-4G/metabolism , Protease Inhibitors/chemistry
17.
Protein J ; 30(6): 404-12, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21748377

ABSTRACT

Serine peptidase inhibitors (serpins) form a superfamily of proteins covering abroad spectrum of different biological functions. Here we describe the inhibitory characterization of leviserpin, the first serpin from the sugar cane weevil Sphenophorus levis. Leviserpin was able to inhibit bovine trypsin by the formation of the covalent complex serpin-peptidase, demonstrated by SDS-PAGE and mass spectroscopy analysis. We also have determined the cleavage site at the reactive center loop, by the analysis of the polypeptides released from de C-terminus of leviserpin. Moreover we investigated the mRNA expression of leviserpin in different stages of S. levis development. Thus the specificity of leviserpin, in addition with its mRNA coding being transcribed through all lifecycle of the insect, can suggest a possible role in defense mechanism by regulating the action of prophenoloxidase (proPO) activating enzyme.


Subject(s)
Serine Proteinase Inhibitors/metabolism , Serpins/metabolism , Weevils/enzymology , Amino Acid Sequence , Animals , Catalytic Domain , Cloning, Molecular , Computer Simulation , Electrophoresis, Polyacrylamide Gel , Kinetics , Mass Spectrometry , Molecular Sequence Data , Saccharum , Sequence Alignment , Serine Proteinase Inhibitors/chemistry , Serine Proteinase Inhibitors/genetics , Serine Proteinase Inhibitors/isolation & purification , Serpins/chemistry , Serpins/genetics , Serpins/isolation & purification , Trypsin/metabolism , Weevils/genetics , Weevils/growth & development
18.
Biochimie ; 93(10): 1701-9, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21689719

ABSTRACT

KLK13 is a kallikrein-related peptidase preferentially expressed in tonsils, esophagus, testis, salivary glands and cervix. We report the activation of KLK13 by kosmotropic salts and glycosaminoglycans and its substrate specificity by employing a series of five substrates derived from the fluorescence resonance energy transfer (FRET) peptide Abz-KLRSSKQ-EDDnp. KLK13 hydrolyzed all these peptides only at basic residues with highest efficiency for R; furthermore, the S(3) to S(2)' subsites accepted most of the natural amino acids with preference also for basic residues. Using a support-bound FRET peptide library eight peptide substrates were identified containing sequences of proteins found in testis and one with myelin basic protein sequence, each of which was well hydrolyzed by KLK13. Histatins are salivary peptides present in higher primates with broad antifungal and mucosal healing activities that are generated from the hydrolysis from large precursor peptides. KLK13 efficiently hydrolyzed synthetic histatin 3 exclusively at R(25) (DSHAKRHHGYKRKFHEKHHSHRGYR(25)↓SNYLYDN) that is the first cleavage observed inside the salivary gland. In conclusion, the observed hydrolytic activities of KLK13 and its co-localization with its activators, glycosaminoglycans in the salivary gland and high concentration of sodium citrate in male reproductive tissues, indicates that KLK13 may play a role in the defense of the upper digestive apparatus and in male reproductive organs.


Subject(s)
Glycosaminoglycans/pharmacology , Kallikreins/metabolism , Salts/pharmacology , Citrates/pharmacology , Enzyme Activation/drug effects , Female , Humans , Male , Salivary Glands/metabolism , Sodium Citrate , Substrate Specificity
19.
J Med Food ; 14(6): 557-62, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21554130

ABSTRACT

The infections by protozoans of the genus Leishmania are a major worldwide health problem, with high endemicity in developing countries. The drugs of choice for the treatment of leishmaniasis are the pentavalent antimonials, which cause renal and cardiac toxicity. As part of a search for new drugs against leishmaniasis, we evaluated the in vitro Leishmania protease inhibition activity of extracts (hexanic, ethyl-acetate, and ethanolic) and fukugetin, a bioflavonoid purified from the ethyl-acetate extract of the pericarp of the fruit of Garcinia brasiliensis, a tree native to Brazilian forests. The isolated compound was characterized by using spectral analyses with nuclear magnetic resonance, mass spectroscopy, ultraviolet, and infrared techniques. The ethyl-acetate extract and the compound fukugetin showed significant activity as inhibitors of Leishmania's proteases, with mean (±SD) IC(50) (50% inhibition concentration of protease activity) values of 15.0±1.3 µg/mL and 3.2±0.5 µM/mL, respectively, characterizing a bioguided assay. In addition, this isolated compound showed no activity against promastigote and amastigote forms of L. (L.) amazonensis and mammalian cells. These results suggest that fukugetin is a potent protease inhibitor of L. (L.) amazonensis and does not cause toxicity in mammalian or Leishmania cells in vitro. This study provides new perspectives on the development of novel drugs that have leishmanicidal activity obtained from natural products and that target the parasite's proteases.


Subject(s)
Antiprotozoal Agents/pharmacology , Garcinia/chemistry , Leishmania/drug effects , Leishmania/enzymology , Plant Extracts/pharmacology , Protease Inhibitors/pharmacology , Protozoan Proteins/antagonists & inhibitors , Animals , Brazil , Fruit/chemistry , Humans , Inhibitory Concentration 50 , Leishmaniasis/parasitology , Peptide Hydrolases/metabolism , Protozoan Proteins/metabolism , Rats
20.
Biol Chem ; 391(9): 1105-12, 2010 Sep.
Article in English | MEDLINE | ID: mdl-20635860

ABSTRACT

Here we report a detailed analysis of magnesium (Mg²+) ion effects on furin hydrolysis of fluorescent resonance energy transfer decapeptide substrates derived from canonical R-X-K/R-R furin cleavage motifs within certain viral envelope glycoproteins and eukaryotic proproteins. Using virus-derived sequences a selective activation of furin by Mg²+) ions was observed as a result of cooperativity between furin subsites. Furin hydrolysis of the peptides Abz-SRRHKR↓FAGV-Q-EDDnp (from measles virus fusion protein F0 and Abz-RERRRKKR↓GLFG-Q-EDDnp (from Asian avian influenza A, H5N1) was activated between 60- and 80-fold by MgCl2. It appears that virus envelope glycoprotein mutations have been selected to increase their susceptibility to furin within cells, a location where Mg²+ is present in adequate concentrations for activation. Both the pH profile of furin and its intrinsic fluorescence were modified by Mg²+ ions, which bind to furin with a K(d) value of 1.1 mM.


Subject(s)
Furin/metabolism , Magnesium/pharmacology , Viral Envelope Proteins/metabolism , Biocatalysis/drug effects , Enzyme Activation/drug effects , Fluorescence Resonance Energy Transfer , Humans , Hydrogen-Ion Concentration , Hydrolysis/drug effects , Influenza A Virus, H5N1 Subtype/chemistry , Influenza A Virus, H5N1 Subtype/genetics , Ions/chemistry , Ions/pharmacology , Magnesium/chemistry , Oligopeptides/chemistry , Proprotein Convertases/metabolism , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae Proteins/metabolism , Substrate Specificity , Viral Envelope Proteins/genetics
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