Propentdyopent: the scaffold of a heme metabolite as an electron reservoir in transition metal complexes.

The dipyrrin-1,9-dione scaffold of heme metabolite propendyopent coordinates late transition metals (Co, Ni, Cu, and Zn) forming homoleptic, pseudo-tetrahedral complexes. Electrochemical and spectroscopic studies reveal that the monoanionic, bidentate ligands behave as electron reservoirs as the complexes reversibly host one or two ligand-based radicals.

Sirtuin inhibitor sirtinol is an intracellular iron chelator.

Sirtinol is a known inhibitor of sirtuin proteins, a family of deacetylases involved in the pathophysiology of aging. Spectroscopic and structural data reveal that this compound is also an iron chelator forming high-spin ferric species in vitro and in cultured leukemia cells. Interactions with the highly regulated iron pool therefore contribute to its overall intracellular agenda.

Optimization of pulsed DEER measurements for Gd-based labels: choice of operational frequencies, pulse durations and positions, and temperature.

In this work, the experimental conditions and parameters necessary to optimize the long-distance (≥ 60 Å) Double Electron-Electron Resonance (DEER) measurements of biomacromolecules labeled with Gd(III) tags are analyzed. The specific parameters discussed are the temperature, microwave band, the separation between the pumping and observation frequencies, pulse train repetition rate, pulse durations and pulse positioning in the electron paramagnetic resonance spectrum. It was found that: (i) in optimized DEER measurements, the observation pulses have to be applied at the maximum of the EPR spectrum; (ii) the optimal temperature range for Ka-band measurements is 14-17 K, while in W-band the optimal temperatures are between 6-9 K; (iii) W-band is preferable to Ka-band for DEER measurements. Recent achievements and the conditions necessary for short-distance measurements (<15 Å) are also briefly discussed.

Pulsed dipolar spectroscopy distance measurements in biomacromolecules labeled with Gd(III) markers.

This work demonstrates the feasibility of using Gd(III) tags for long-range Double Electron Electron Resonance (DEER) distance measurements in biomacromolecules. Double-stranded 14- base pair Gd(III)-DNA conjugates were synthesized and investigated at K(a) band. For the longest Gd(III) tag the average distance and average deviation between Gd(III) ions determined from the DEER time domains was about 59±12Å. This result demonstrates that DEER measurements with Gd(III) tags can be routinely carried out for distances of at least 60Å, and analysis indicates that distance measurements up to 100Å are possible. Compared with commonly used nitroxide labels, Gd(III)-based labels will be most beneficial for the detection of distance variations in large biomacromolecules, with an emphasis on large scale changes in shape or distance. Tracking the folding/unfolding and domain interactions of proteins and the conformational changes in DNA are examples of such applications.

Distance measurements in model bis-Gd(III) complexes with flexible "bridge". Emulation of biological molecules having flexible structure with Gd(III) labels attached.

In this work, we continue to explore Gd(III) as a possible spin label for high-field Double Electron-Electron Resonance (DEER) based distance measurements in biological molecules with flexible geometry. For this purpose, a bis-Gd(III) complex with a flexible "bridge" was used as a model. The distances in the model were expected to be distributed in the range of 5-26 A, allowing us to probe the shortest limits of accessible distances which were found to be as small as 13 A. The upper distance limit for these labels was also evaluated and was found to be about 60 A. Various pulse duration setups can result in apparent differences in the distribution function derived from DEER kinetics due to short distance limit variations. The advantages, such as the ability to perform measurements at cryogenic temperatures and high repetition rates simultaneously, the use of very short pumping and observation pulses without mutual interference, the lack of orientational selectivity, as well as the shortcomings, such as the limited mw operational frequency range and intrinsically smaller amplitude of oscillation related to dipolar interaction as compared with nitroxide spin labels are discussed. Most probably the use of nitroxide and Gd-based labels for distance measurements will be complementary depending on the particulars of the problem and the availability of instrumentation.

HIGH-RESOLUTION EPR SPECTROSCOPY OF MO ENZYMES. SULFITE OXIDASES: STRUCTURAL AND FUNCTIONAL IMPLICATIONS.

Sulfite oxidases (SOs) are physiologically vital Mo-containing enzymes that occur in animals, plants, and bacteria and which catalyze the oxidation of sulfite to sulfate, the terminal reaction in the oxidative degradation of sulfur-containing compounds. X-ray structure determinations of SOs from several species show nearly identical coordination structures of the molybdenum active center, and a common catalytic mechanism has been proposed that involves the generation of a transient paramagnetic Mo(V) state through a series of coupled electron-proton transfer steps. This chapter describes the use of pulsed electron-nuclear double resonance (ENDOR) and electron spin echo envelope modulation (ESEEM) spectroscopic techniques to obtain information about the structure of this Mo(V) species from the hyperfine interactions (hfi) and nuclear quadrupole interactions (nqi) of nearby magnetic nuclei. Variable frequency instrumentation is essential to optimize the experimental conditions for measuring the couplings of different types of nuclei (e.g., (1)H, (2)H, (31)P, and (17)O). The theoretical background necessary for understanding the ESEEM and ENDOR spectra of the Mo(V) centers of SOs is outlined, and examples of the use of advanced pulsed EPR methods (RP-ESEEM, HYSCORE, integrated four-pulse ESEEM) for structure determination are presented. The analysis of variable-frequency pulsed EPR data from SOs is aided by parallel studies of model compounds that contain key functional groups or that are isotopically labeled and thus provide benchmark data for enzymes. Enormous progress has been made on the use of high-resolution variable-frequency pulsed EPR methods to investigate the structures and mechanisms of SOs during the past ~15 years, and the future is bright for the continued development and application of this technology to SOs, other molybdenum enzymes, and other problems in metallobiochemistry.

1H pulsed ENDOR and ESEEM evidence that the bis-imidazole complexes of iron(III) tetraphenylchlorin and tetraphenylporphyrin have the same order of g values, and the same electronic ground state.

The electronic structures of the bis-imidazole complexes of iron(III) tetraphenylporphyrin ([(TPP)Fe(ImH)(2)](+)) and iron(III) tetraphenylchlorin ([(TPC)Fe(ImH)(2)](+)) in frozen glassy solutions have been studied by the pulsed electron nuclear double resonance (ENDOR) technique of Mims and by electron spin-echo envelope modulation (ESEEM) spectroscopy. ESEEM spectra have been used to determine the orientation of the imidazole ligand planes with respect to the g tensor axes. In the ENDOR spectra, the manifestations of the implicit TRIPLE effect described and explained earlier by Doan et al. (J. Am. Chem. Soc. 1996, 118, 7014) were seen. In this work, the explicit expressions describing this effect were derived for the first time and used to successfully simulate the proton ENDOR spectra at the low- (LF) and high-field (HF) edges of the EPR spectrum. Using pulsed ENDOR, we have been able to determine the spin density distributions in the pi-systems of both tetrapyrroles and show that [(TPC)Fe(ImH)(2)](+) has the electronic orbital ground state (d(xy)())(2)(d(xz)(),d(yz)())(3), the same as that known for [(TPP)Fe(ImH)(2)](+), and the largest principal g value corresponds to the g tensor axis 3, which is normal to the heme plane. For the TPP complex, the g tensor axis 1, corresponding to the smallest principal g value, was found to be at an angle phi(1) of 30-35 degrees from the N-Fe-N axis, with the ligand planes rotated by the angle of 20-25 degrees in the opposite direction. For the TPC complex, phi(1) was found to be about 25 degrees from the direction N(I)-Fe-N(III), where N(I) corresponds to the nitrogen of the saturated pyrrole ring. The ligand planes in this complex were found to be oriented at an angle of about 10 degrees in the opposite direction.

Properties of the HYSCORE spin echo signal.

In hyperfine sublevel correlation spectroscopy (HYSCORE), the finite duration of the microwave pulses leads to an incomplete inversion of the electron spin magnetization by the third pulse, which results in a significant admixture of stimulated ESEEM to HYSCORE ESEEM. This virtually unavoidable contribution of stimulated ESEEM seriously hampers the analysis of the modulation amplitudes in HYSCORE. In this work, we analyze the properties of the spin echo signals contributing to the composite HYSCORE signal. Based on this analysis, we propose the strategies of HYSCORE data acquisition and processing that allow one to practically eliminate the contribution of the stimulated echo and make the HYSCORE ESEEM analyzable in quantitative terms.

ESEEM measurements with time-resolved detection of the entire ESE signal shape.

In this work we discuss the extension of electron spin-echo envelope modulation (ESEEM) measurements to the additional time dimension, the spin-echo coordinate. The time-resolved acquisition of the entire spin-echo signal shape retains information on the dependence of the ESEEM amplitude on the position within the ESE signal. Therefore, not only can such acquisition be completely substituted for the boxcar integration in ESEEM measurements, but it can also improve the performance of the ESEEM experiments in terms of obtaining correct modulation amplitudes and a better signal/noise ratio. Implementing such an acquisition in pulse-adjustable ESEEM measurements transforms these techniques into routine and convenient experiments used to increase the modulation amplitude.

Matrix line in pulsed electron-nuclear double resonance spectra.

The intense line in Mims and Davies electron-nuclear double resonance (ENDOR) spectra due to the hyperfine interactions of an unpaired electron with distant matrix nuclei is shown to originate from a simultaneous inversion of a large number of nuclear spins by a radiofrequency pulse. Theoretical expressions describing the matrix ENDOR effect are derived and verified experimentally.