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1.
J Imaging ; 9(11)2023 Nov 20.
Article in English | MEDLINE | ID: mdl-37998099

ABSTRACT

Accurate diagnosis and timely intervention are key to addressing common knee conditions effectively. In this work, we aim to identify textural changes in knee lesions based on bone marrow edema (BME), injury (INJ), and osteoarthritis (OST). One hundred and twenty-one MRI knee examinations were selected. Cases were divided into three groups based on radiological findings: forty-one in the BME, thirty-seven in the INJ, and forty-three in the OST groups. From each ROI, eighty-one radiomic descriptors were calculated, encoding texture information. The results suggested differences in the texture characteristics of regions of interest (ROIs) extracted from PD-FSE and STIR sequences. We observed that the ROIs associated with BME exhibited greater local contrast and a wider range of structural diversity compared to the ROIs corresponding to OST. When it comes to STIR sequences, the ROIs related to BME showed higher uniformity in terms of both signal intensity and the variability of local structures compared to the INJ ROIs. A combined radiomic descriptor managed to achieve a high separation ability, with AUC of 0.93 ± 0.02 in the test set. Radiomics analysis may provide a non-invasive and quantitative means to assess the spatial distribution and heterogeneity of bone marrow edema, aiding in its early detection and characterization.

2.
Biomed Eng Educ ; 3(1): 51-60, 2023.
Article in English | MEDLINE | ID: mdl-36405989

ABSTRACT

In this study, we have evaluated the real-world conditions, the job outlook and the job satisfaction in the Biomedical Engineering (BME) sector in Greece on the basis of the experience of about 12% of the graduates of the BME Department of the University of West Attica, Greece. An anonymous online questionnaire, implemented on the Microsoft Forms platform using multiple choice questions, short text answers and Likert-based scales, became publicly available to the graduates of the BME department. About 12% of the department's graduates responded to the survey. Results show that the time to first employment is very fast for both men and women. About 51.4% of men and 69.4% of women find their first job employment in the BME sector even before their graduation. The internship is considered important for first job placement by more than 50.6% of participants. BME jobs are perceived as most interesting (73.6%), in a good environment (71.9%), with satisfactory career prospects (45.9%), with satisfactory monthly net salary (44.2%) and satisfactory working hours (52.8%). Men are mostly employed in Service (40.5%), whereas women are mostly employed in Sales (33.3%). Most graduates with BSc degree are employed in Service (39.1%) and Sales (21.8%), most graduates with MSc degree are employed in Service (34.6%) and Hospitals/Health care centers (21.2%), and most graduates with PhD degree are employed in Academia and R&D (62.5%). Most well-paid participants (>1500 euros net salary) were PhD holders (71.5%), followed by MSc holders (25%) and BSc holders (16.2%). Maximum monthly salaries were found for those with more than 10 years of experience. In terms of BME sector, most well-paid participants (>1500 euros monthly net salary) are those working with R&D (86.7%), Sales (86.7%) and Management (60%). There is a high demand for biomedical engineers in the labor market in Greece, despite the continuing economic recession that the country is suffering from the past 12 years.

3.
Int J Comput Assist Radiol Surg ; 16(12): 2201-2214, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34643884

ABSTRACT

PURPOSE: Vertebrae, intervertebral disc (IVD) and spinal canal (SC) displacements are in the root of several spinal cord pathologies. The localization and boundary extraction of these structures, along with the quantification of their displacements, provide valuable clues for assessing each pathological condition. In this work, we propose a computational method for boundary extraction of vertebrae, IVD and SC in magnetic resonance images (MRI). METHOD: Vertebrae shape priors derived from computed tomography (CT) images are used to guide vertebrae, IVD and SC boundary extraction in MRI. This strategy is dictated by three considerations: (1) CT is the modality of choice for highlighting solid structures such as vertebrae, (2) vertebrae boundaries indirectly impose constraints on the boundaries of neighbouring structures (IVD and SC), and (3) it can be observed that edges are similarly located in CT and MR images; therefore, gradient profiles and shape priors learned by active shape models (ASMs) from CT are also valid in MRI. RESULTS: Experimental comparisons on two MR image datasets demonstrate that the proposed approach obtains segmentation results, which are comparable to the state of the art. Moreover, the adopted bimodal strategy is validated by demonstrating that CT-derived shape priors lead to more accurate boundary extraction than MRI-derived shape priors, even in the case of MR image applications. CONCLUSION: Unlike existing bimodal methods, the proposed one is not dependent on the availability of CT/MR image pairs, which are not usually acquired from the same patient. In addition, unlike state-of-the-art deep learning-based methods, it is not dependent on large amounts of training data. The proposed method requires a limited amount of user intervention.


Subject(s)
Intervertebral Disc , Magnetic Resonance Imaging , Humans , Spinal Canal , Tomography, X-Ray Computed
4.
Microsc Res Tech ; 84(10): 2421-2433, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33929071

ABSTRACT

Our purpose was to employ microscopy images of amplified in breast cancer 1 (AIB1)-stained biopsy material of patients with colorectal cancer (CRC) to: (a) find statistically significant differences (SSDs) in the texture and color of the epithelial gland tissue, between 5-year survivors and non-survivors after the first diagnosis and (b) employ machine learning (ML) methods for predicting the CRC-patient 5-year survival. We collected biopsy material from 54 patients with diagnosed CRC from the archives of the University Hospital of Patras, Greece. Twenty-six of the patients had survived 5 years after the first diagnosis. We selected regions of interest containing the epithelial gland at different microscope lens magnifications. We computed 69 textural and color features. Furthermore, we identified features with SSDs between the two groups of patients and we designed a supervised ML system for predicting the CRC-patient 5-year survival. Additionally, we employed the VGG16 pretrained convolution neural network to extract deep learning (DL) features, the support vector machines classifier, and the bootstrap cross-validation method for boosting the accuracy of predicting 5-year survival. Fourteen features sustained SSDs between the two groups of patients. The supervised ML system achieved 87% accuracy in predicting 5-year survival. In comparison, the DL system, using images from all magnifications, gave 97% classification accuracy. Glandular texture in 5-year non-survivors appeared to be of lower contrast, coarseness, roughness, local pixel correlation, and lower AIB1 variation, all indicating loss of textural definition. The supervised ML system revealed useful information regarding features that discriminate between 5-year survivors and non-survivors while the DL system displayed superior accuracy by employing DL features.


Subject(s)
Colorectal Neoplasms , Microscopy , Biopsy , Humans , Machine Learning , Neural Networks, Computer
5.
Med Biol Eng Comput ; 58(3): 573-587, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31919721

ABSTRACT

The cognitive processing and detection of errors is important in the adaptation of the behavioral and learning processes. This brain activity is often reflected as distinct patterns of event-related potentials (ERPs) that can be employed in the detection and interpretation of the cerebral responses to erroneous stimuli. However, high-accuracy cross-condition classification is challenging due to the significant variations of the error-related ERP components (ErrPs) between complexity conditions, thus hindering the development of error recognition systems. In this study, we employed support vector machines (SVM) classification methods, based on waveform characteristics of ErrPs from different time windows, to detect correct and incorrect responses in an audio identification task with two conditions of different complexity. Since the performance of the classifiers usually depends on the salience of the features employed, a combination of the sequential forward floating feature selection (SFFS) and sequential forward feature selection (SFS) methods was implemented to detect condition-independent and condition-specific feature subsets. Our framework achieved high accuracy using a small subset of the available features both for cross- and within-condition classification, hence supporting the notion that machine learning techniques can detect hidden patterns of ErrP-based features, irrespective of task complexity while additionally elucidating complexity-related error processing variations. Graphical abstract A schematic of the proposed approach. (a) EEG recordings in an auditory experiment in two conditions of different complexity. (b) Characteristic event related activity feature extraction. (c) Selection of feature vector subsets for easy and hard conditions corresponding to correct (Class1) and incorrect (Class2) responses. (d) Performance for individual and cross-condition classification.


Subject(s)
Algorithms , Brain/physiology , Adult , Area Under Curve , Electrodes , Electroencephalography , Female , Humans , Male , Support Vector Machine
6.
Biomed Tech (Berl) ; 65(3): 315-325, 2020 May 26.
Article in English | MEDLINE | ID: mdl-31747374

ABSTRACT

The aim of the present study was to design an adaptable pattern recognition (PR) system to discriminate low- from high-grade squamous intraepithelial lesions (LSIL and HSIL, respectively) of the cervix using microscopy images of hematoxylin and eosin (H&E)-stained biopsy material from two different medical centers. Clinical material comprised H&E-stained biopsies of 66 patients diagnosed with LSIL (34 cases) or HSIL (32 cases). Regions of interest were selected from each patient's digitized microscopy images. Seventy-seven features were generated, regarding the texture, morphology and spatial distribution of nuclei. The probabilistic neural network (PNN) classifier, the exhaustive search feature selection method, the leave-one-out (LOO) and the bootstrap validation methods were used to design the PR system and to assess its precision. Optimal PR system design and evaluation were made feasible by the employment of graphics processing unit (GPU) and Compute Unified Device Architecture (CUDA) technologies. The accuracy of the PR-system was 93% and 88.6% when using the LOO and bootstrap validation methods, respectively. The proposed PR system for discriminating LSIL from HSIL of the cervix was designed to operate in a clinical environment, having the capability of being redesigned when new verified cases are added to its repository and when data from other medical centers are included, following similar biopsy material preparation procedures.


Subject(s)
Cervix Uteri/diagnostic imaging , Pattern Recognition, Automated/methods , Squamous Intraepithelial Lesions/diagnostic imaging , Uterine Cervical Neoplasms/diagnostic imaging , Biopsy , Cervix Uteri/physiopathology , Female , Humans , Neural Networks, Computer
7.
Appl Immunohistochem Mol Morphol ; 28(9): 702-710, 2020 10.
Article in English | MEDLINE | ID: mdl-31876603

ABSTRACT

OBJECTIVES: The objective of this study was (a) to identify, by computer processing of digitized images of hematoxylin and eosin (H&E)-stained biopsy material of the cervix, differences in the structure of nuclei between high-risk (HR) and low-risk (LR) human papillomavirus virus (HPV) types and (b) to assess the HPV risk type by designing a decision-support system (DSS). MATERIALS AND METHODS: Clinical material comprised H&E-stained biopsies from squamous intraepithelial lesions of 55 patients with polymerase chain reaction-verified HR-HPV (26 patients) or LR-HPV (29 patients) infection. From each patient's biopsy specimen, we digitized 1 region of interest, guided by the expert physician. After the segmentation of nuclei, we quantified from each nucleus 77 textural and morphologic features. We represented each patient by a 77-feature vector, the feature means of all nuclei, and we created 2 classes for HR-HPV and LR-HPV types. We carried out (a) a statistical analysis to determine features with statistically significant differences between the 2 classes and (b) a discriminant analysis, by designing a DSS, to estimate the HPV risk type. RESULTS: Statistical analysis revealed 40 features with between-classes statistically significant differences and discriminant analysis showed that the best DSS design achieved a high accuracy of about 93% in identifying the HPV risk type on data not used in the design of the DSS. CONCLUSIONS: Nuclei of HR-HPV types were of higher intensity, contained larger structures, had higher edges, were coarser, rougher, had higher contrast, were larger, and attained more irregular shapes. The proposed DSS indicates that discrimination of HPV risk type from images of H&E-stained biopsy material of the cervix is promising.


Subject(s)
Cervix Uteri/pathology , Microscopy/methods , Papillomaviridae/physiology , Papillomavirus Infections/diagnosis , Uterine Cervical Neoplasms/diagnosis , Adolescent , Adult , Biopsy , Clinical Decision-Making , Diagnostic Imaging , Eosine Yellowish-(YS) , Female , Hematoxylin , Humans , Papillomavirus Infections/pathology , Risk , Staining and Labeling , Uterine Cervical Neoplasms/pathology , Young Adult
8.
Technol Health Care ; 27(3): 301-316, 2019.
Article in English | MEDLINE | ID: mdl-30829626

ABSTRACT

Macular diseases, including neovascular age-related macular degeneration (nvAMD), are leading causes of irreversible blindness and visual impairment. One prominent feature of nvAMD is the detachment of the retinal pigment epithelium. The aim of this study is to implement an automated method for the segmentation of the pigment epithelial detachment (PED) using optical coherence tomography (OCT). OCT datasets from 8 patients with nvAMD were acquired during multiple sessions. At each session, 17 images with a resolution of 1020 × 640 pixels were obtained. The images were segmented using Gaussian filtering and template matching for the detection of the upper and lower border of the PED, respectively. The results of the method were compared with the ones obtained from the manual segmentation of the images by an expert. Four well-known metrics were used to evaluate the performance of the method with respect to the manual segmentation, resulting in high scores of consistency. Furthermore, the proposed method was also compared with four other well-known methods providing similar or superior performance.


Subject(s)
Retinal Detachment/diagnosis , Tomography, Optical Coherence/methods , Tomography, Optical Coherence/statistics & numerical data , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Normal Distribution , Retrospective Studies
9.
Appl Immunohistochem Mol Morphol ; 27(10): 749-757, 2019.
Article in English | MEDLINE | ID: mdl-30095464

ABSTRACT

OBJECTIVE: The objective of this study was to study the textural and color changes occurring in the epithelial gland tissue with advancing colorectal cancer (CRC), utilizing immunohistochemical stain for AIB1 expression biopsy material. MATERIAL AND METHODS: Clinical material comprised biopsy specimens of 67 patients with a diagnosis of CRC. Two experienced pathologists used H&E-stained material for grading CRC lesions and immunohistochemical (IHC) stain for AIB1 expression. Twenty six patients were diagnosed with grade I, 28 with grade II, and 13 with grade III CRC. Guided by pathologists, we selected the regions of interest from AIB1-digitized images of each patient, encompassing the epithelial gland, and we computed 69 features, quantifying textural and color properties of the AIB1-stained lesions. We evaluated the statistical differences between grades by means of the Wilcoxon statistical test for each feature, and we assessed changes in feature values with advancing tumor grade by means of the Point Biserial Correlation. RESULTS: Statistical analysis revealed 14 single features, quantifying textural and color properties of the epithelial gland, which sustained statistically significant differences between LG-CRC and HG-CRC cases. These features were drawn from the gray-level image histogram, the cooccurrence matrix, the run length matrix, the discrete wavelet transform, the Tamura method, and the L*a*b color transform. CONCLUSIONS: A systematic statistical analysis of AIB1-stained biopsy material showed that high-grade CRC lesions contain higher intensity levels, appear coarser, are more homogeneous with smooth variation across the image, have lower contrast that is slowly varying across the image, have lower AIB1 staining, and have lower edges. A combination of textural and color attributes, evaluating image gray-tone distribution, textural roughness, inhomogeneity, AIB1 staining, and image coarseness should be considered in evaluating AIB1-stained CRC lesions.


Subject(s)
Colonic Neoplasms/diagnosis , Colorectal Neoplasms/diagnosis , Epithelial Cells/metabolism , Immunohistochemistry/methods , Nuclear Receptor Coactivator 3/metabolism , Adult , Aged , Aged, 80 and over , Biopsy , Colonic Neoplasms/metabolism , Colonic Neoplasms/pathology , Colorectal Neoplasms/metabolism , Colorectal Neoplasms/pathology , Epithelial Cells/pathology , Female , Humans , Image Processing, Computer-Assisted , Male , Middle Aged , Neoplasm Grading
10.
Int J Med Inform ; 105: 1-10, 2017 09.
Article in English | MEDLINE | ID: mdl-28750902

ABSTRACT

OBJECTIVE: The aim of this study was to propose features that evaluate pictorial differences between melanocytic nevus (mole) and melanoma lesions by computer-based analysis of plain photography images and to design a cross-platform, tunable, decision support system to discriminate with high accuracy moles from melanomas in different publicly available image databases. MATERIAL AND METHODS: Digital plain photography images of verified mole and melanoma lesions were downloaded from (i) Edinburgh University Hospital, UK, (Dermofit, 330moles/70 melanomas, under signed agreement), from 5 different centers (Multicenter, 63moles/25 melanomas, publicly available), and from the Groningen University, Netherlands (Groningen, 100moles/70 melanomas, publicly available). Images were processed for outlining the lesion-border and isolating the lesion from the surrounding background. Fourteen features were generated from each lesion evaluating texture (4), structure (5), shape (4) and color (1). Features were subjected to statistical analysis for determining differences in pictorial properties between moles and melanomas. The Probabilistic Neural Network (PNN) classifier, the exhaustive search features selection, the leave-one-out (LOO), and the external cross-validation (ECV) methods were used to design the PR-system for discriminating between moles and melanomas. RESULTS: Statistical analysis revealed that melanomas as compared to moles were of lower intensity, of less homogenous surface, had more dark pixels with intensities spanning larger spectra of gray-values, contained more objects of different sizes and gray-levels, had more asymmetrical shapes and irregular outlines, had abrupt intensity transitions from lesion to background tissue, and had more distinct colors. The PR-system designed by the Dermofit images scored on the Dermofit images, using the ECV, 94.1%, 82.9%, 96.5% for overall accuracy, sensitivity, specificity, on the Multicenter Images 92.0%, 88%, 93.7% and on the Groningen Images 76.2%, 73.9%, 77.8% respectively. CONCLUSION: The PR-system as designed by the Dermofit image database could be fine-tuned to classify with good accuracy plain photography moles/melanomas images of other databases employing different image capturing equipment and protocols.


Subject(s)
Databases, Factual , Image Processing, Computer-Assisted/methods , Melanoma/diagnosis , Nevus, Pigmented/diagnosis , Pattern Recognition, Automated/methods , Skin Neoplasms/diagnosis , Diagnosis, Differential , Humans , Netherlands , Photography , ROC Curve , Software
11.
J Digit Imaging ; 30(3): 287-295, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28083826

ABSTRACT

Histopathology image processing, analysis and computer-aided diagnosis have been shown as effective assisting tools towards reliable and intra-/inter-observer invariant decisions in traditional pathology. Especially for cancer patients, decisions need to be as accurate as possible in order to increase the probability of optimal treatment planning. In this study, we propose a new image collection library (HICL-Histology Image Collection Library) comprising 3831 histological images of three different diseases, for fostering research in histopathology image processing, analysis and computer-aided diagnosis. Raw data comprised 93, 116 and 55 cases of brain, breast and laryngeal cancer respectively collected from the archives of the University Hospital of Patras, Greece. The 3831 images were generated from the most representative regions of the pathology, specified by an experienced histopathologist. The HICL Image Collection is free for access under an academic license at http://medisp.bme.teiath.gr/hicl/ . Potential exploitations of the proposed library may span over a board spectrum, such as in image processing to improve visualization, in segmentation for nuclei detection, in decision support systems for second opinion consultations, in statistical analysis for investigation of potential correlations between clinical annotations and imaging findings and, generally, in fostering research on histopathology image processing and analysis. To the best of our knowledge, the HICL constitutes the first attempt towards creation of a reference image collection library in the field of traditional histopathology, publicly and freely available to the scientific community.


Subject(s)
Brain Neoplasms/pathology , Breast Neoplasms/pathology , Decision Support Systems, Clinical , Image Processing, Computer-Assisted , Laryngeal Neoplasms/pathology , Brain Neoplasms/diagnostic imaging , Breast Neoplasms/diagnostic imaging , Diagnosis, Computer-Assisted , Expert Systems , Female , Humans , Laryngeal Neoplasms/diagnostic imaging , Male , Middle Aged , Observer Variation , Software
12.
Magn Reson Imaging ; 35: 39-45, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27569368

ABSTRACT

Dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) with gadolinium constitutes one of the most promising protocols for boosting up the sensitivity in breast cancer detection. The aim of this study was twofold: first to design an image processing methodology to estimate the vascularity of the breast region in DCE-MRI images and second to investigate whether the differences in the composition/texture and vascularity of normal, benign and malignant breasts may serve as potential indicators regarding the presence of the disease. Clinical material comprised thirty nine cases examined on a 3.0-T MRI system (SIGNA HDx; GE Healthcare). Vessel segmentation was performed using a custom made modification of the Seeded Region Growing algorithm that was designed in order to identify pixels belonging to the breast vascular network. Two families of features were extracted: first, morphological and textural features from segmented images in order to quantify the extent and the properties of the vascular network; second, textural features from the whole breast region in order to investigate whether the nature of the disease causes statistically important changes in the texture of affected breasts. Results have indicated that: (a) the texture of vessels presents statistically significant differences (p<0.001) between normal, benign and malignant cases, (b) the texture of the whole breast region for malignant and non-malignant breasts, produced statistically significant differences (p<0.001), (c) the relative ratios of the texture between the two breasts may be used for the discrimination of non-malignant from malignant patients, and (d) an area under the receiver operating characteristic curve of 0.908 (AUC) was found when features were combined in a logistic regression prediction rule according to ROC analysis.


Subject(s)
Breast Neoplasms/blood supply , Breast/blood supply , Contrast Media , Image Enhancement/methods , Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Adult , Aged , Algorithms , Breast/diagnostic imaging , Breast/pathology , Breast Neoplasms/diagnostic imaging , Breast Neoplasms/pathology , Female , Gadolinium , Humans , Middle Aged , ROC Curve
13.
Neuroscience ; 339: 385-395, 2016 Dec 17.
Article in English | MEDLINE | ID: mdl-27751962

ABSTRACT

The frequency of intrusive saccades during maintenance of active visual fixation has been used as a measure of sustained visual attention in studies of healthy subjects as well as of neuropsychiatric patient populations. In this study, the mechanism that generates intrusive saccades during active visual fixation was investigated in a population of young healthy men performing three sustained fixation tasks (fixation to a visual target, fixation to a visual target with visual distracters, and fixation straight ahead in the dark). Markov Chain modeling of inter-saccade intervals (ISIs) was utilized. First- and second-order Markov modeling provided indications for the existence of a non-random pattern in the production of intrusive saccades. Accordingly, the system of intrusive saccade generation may operate in two "attractor" states, one in which intrusive saccades occur at short consecutive ISIs and another in which intrusive saccades occur at long consecutive ISIs. These states might correspond to two distinct states of the attention system, one of low focused - high distractibility and another of high focused - low distractibility, such as those proposed in the adaptive gain theory for the control of attention by the noradrenergic system in the brain. To the authors knowledge, this is the first time that Markov Chain modeling has been applied to the analysis of the ISIs of intrusive saccades.


Subject(s)
Attention , Fixation, Ocular , Models, Psychological , Saccades , Adolescent , Eye Movement Measurements , Humans , Male , Markov Chains , Models, Biological , Young Adult
14.
Comput Biol Med ; 60: 151-62, 2015 May.
Article in English | MEDLINE | ID: mdl-25836568

ABSTRACT

In this paper, a methodological scheme for identifying distinct patterns of oculomotor behavior such as saccades, microsaccades, blinks and fixations from time series of eye's angular displacement is presented. The first step of the proposed methodology involves signal detrending for artifacts removal and estimation of eye's angular velocity. Then, feature vectors from fourteen first-order statistical features are formed from each angular displacement and velocity signal using sliding, fixed-length time windows. The obtained feature vectors are used for training and testing three artificial neural network classifiers, connected in cascade. The three classifiers discriminate between blinks and non-blinks, fixations and non-fixations and saccades and microsaccades, respectively. The proposed methodology was tested on a dataset from 1392 subjects, each performing three oculomotor fixation conditions. The average overall accuracy of the three classifiers, with respect to the manual identification of eye movements by experts, was 95.9%. The proposed methodological scheme provided better results than the well-known Velocity Threshold algorithm, which was used for comparison. The findings of the present study indicate that the utilization of pattern recognition techniques in the task of identifying the various eye movements may provide accurate and robust results.


Subject(s)
Eye Movements/physiology , Pattern Recognition, Automated , Saccades/physiology , Adolescent , Adult , Algorithms , Artifacts , Humans , Male , Models, Statistical , Neural Networks, Computer , Reproducibility of Results , Signal Processing, Computer-Assisted , Young Adult
15.
Comput Biol Med ; 48: 42-54, 2014 May.
Article in English | MEDLINE | ID: mdl-24637146

ABSTRACT

In this work, we present an approach for implementing an implicit scheme for the numerical solution of the partial differential equation of the evolution of an active contour/surface. The proposed scheme is applicable to any variant of the traditional active contour (AC), irrespectively of the calculation of the image-based force field and it is readily applicable to explicitly parameterized active surfaces (AS). The proposed approach is formulated as an infinite impulse response (IIR) filtering of the coordinates of the contour/surface points. The poles of the filter are determined by the parameters controlling the shape of the active contour/surface. We show that the proposed IIR-based implicit evolution scheme has very low complexity. Furthermore, the proposed scheme is numerically stable, thus it allows the convergence of the AC/AS with significantly fewer iterations than the explicit evolution scheme. It also possesses the separability property along the two parameters of the AS, thus it may be applied to deformable surfaces, without the need to store and invert large sparse matrices. We implemented the proposed IIR-based implicit evolution scheme in the Vector Field Convolution (VFC) AC/AS using synthetic and clinical volumetric data. We compared the segmentation results with those of the explicit AC/AS evolution, in terms of accuracy and efficiency. Results show that the VFC AC/AS with the proposed IIR-based implicit evolution scheme achieves the same segmentation results with the explicit scheme, with considerably less computation time.


Subject(s)
Diagnostic Imaging/methods , Imaging, Three-Dimensional/methods , Algorithms , Humans , Medical Informatics Applications
16.
Comput Biol Med ; 43(12): 2118-26, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24290929

ABSTRACT

Primary and Secondary Polycythemia are diseases of the bone marrow that affect the blood's composition and prohibit patients from becoming blood donors. Since these diseases may become fatal, their early diagnosis is important. In this paper, a classification system for the diagnosis of Primary and Secondary Polycythemia is proposed. The proposed system classifies input data into three classes; Healthy, Primary Polycythemic (PP) and Secondary Polycythemic (SP) and is implemented using two separate binary classification levels. The first level performs the Healthy/non-Healthy classification and the second level the PP/SP classification. To this end, a novel wrapper feature selection algorithm, called the LM-FM algorithm, is presented in order to maximize the classifier's performance. The algorithm is comprised of two stages that are applied sequentially: the Local Maximization (LM) stage and the Floating Maximization (FM) stage. The LM stage finds the best possible subset of a fixed predefined size, which is then used as an input for the next stage. The FM stage uses a floating size technique to search for an even better solution by varying the initially provided subset size. Then, the Support Vector Machine (SVM) classifier is used for the discrimination of the data at each classification level. The proposed classification system is compared with various well-established feature selection techniques such as the Sequential Floating Forward Selection (SFFS) and the Maximum Output Information (MOI) wrapper schemes, and with standalone classification techniques such as the Multilayer Perceptron (MLP) and SVM classifier. The proposed LM-FM feature selection algorithm combined with the SVM classifier increases the overall performance of the classification system, scoring up to 98.9% overall accuracy at the first classification level and up to 96.6% at the second classification level. Moreover, it provides excellent robustness regardless of the size of the input feature subset used.


Subject(s)
Diagnosis, Computer-Assisted/methods , Polycythemia/diagnosis , Support Vector Machine , Adult , Aged , Female , Humans , Male , Middle Aged
17.
Anal Quant Cytopathol Histpathol ; 35(2): 105-13, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23700719

ABSTRACT

OBJECTIVE: To present a texture analysis method in order to achieve texture classification for 240 histological images of the endometrium. STUDY DESIGN: A total of 128 patients with endometrial cancer and 112 subjects with no pathological condition were imaged. For each image 190 texture features were initially extracted, derived from the wavelets, the Gabor filters, and the Law's masks, which were reduced after feature selection in only 4 features. RESULTS: The images were classified into 2 categories using artificial neural networks, and the reported classification accuracy was 98.1%. CONCLUSION: The results showed that there was a strong discrimination between histological images of cancerous and normal tissue of the endometrium, based on the proposed set of texture features.


Subject(s)
Endometrial Neoplasms/classification , Endometrial Neoplasms/pathology , Endometrium/pathology , Image Cytometry/methods , Neural Networks, Computer , Pattern Recognition, Automated/methods , Adult , Female , Humans , ROC Curve , Sensitivity and Specificity
18.
Med Biol Eng Comput ; 51(8): 859-67, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23504345

ABSTRACT

In recent years, hysteroscopy, used as an outpatient office procedure, in combination with endometrial biopsy, has demonstrated its great potential as the method of first choice in the diagnosis of various gynecological abnormalities including abnormal uterine bleeding (AUB) and endometrial cancer (CA). In patients suffering with AUB, the blood vessels of the endometrium are hypertrophic, whereas in the case of CA vascularization is irregular or anarchic. In this paper, a methodology for the classification of hysteroscopical images of endometrium using vessel and texture features is presented. A total of 28 patients with abnormal uterine bleeding, 10 patients with endometrial cancer and 39 subjects with no pathological condition were imaged. 16 of the patients with AUB were premenopausal and 12 postmenopausal, all with CA were postmenopausal, and all with no pathological condition were premenopausal. All images were examined for the appearance of endometrial vessels and non-vascular structures. For each image, 167 texture and vessel's features were initially extracted, which were reduced after feature selection in only 4 features. The images were classified into three categories using artificial neural networks and the reported classification accuracy was 91.2 %, while the specificity and sensitivity were 83.8 and 93.6 % respectively.


Subject(s)
Endometrium/blood supply , Hysteroscopy/methods , Image Processing, Computer-Assisted/methods , Neural Networks, Computer , Algorithms , Cluster Analysis , Endometrial Neoplasms/pathology , Endometrium/pathology , Female , Fuzzy Logic , Humans , Sensitivity and Specificity , Uterine Hemorrhage/pathology
19.
Anal Quant Cytol Histol ; 33(4): 215-22, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21980626

ABSTRACT

OBJECTIVE: To assist diagnosis of thyroid malignancy, implementing a decision support system (DSS) using fine needle aspiration biopsy (FNAB) data. STUDY DESIGN: The set of 2,035 thyroid smears contained 1,886 smears of nonmalignancy (class 1) and 150 smears of malignancy (class 2) verified histologically. For each smear, 67 medical features were considered by the expert, forming 2,036 feature vectors, which were fed into a DSS for discriminating between malignant and nonmalignant smears. The DSS comprised a feature selection and classification module using a combination of three classifiers, the artificial neural network, the support vector machines, and the k-nearest neighbor, under the majority vote procedure. RESULTS: The overall classification accuracy of the DSS was 98.6%, marginally better than the FNAB (97.3%). The DSS had lower sensitivity (89.1%) and better specificity (99.4%) compared to the FNAB. Regarding the smears characterized as "suspicious" by FNAB, a significant improvement of overall accuracy was obtained by the proposed DSS system (84.6%) compared to the FNAB (50.0%). CONCLUSION: The proposed DSS provides significant improvement compared to FNAB regarding discrimination of smears characterized by an expert as "suspicious," reducing the number of patients undergoing surgical procedures.


Subject(s)
Biopsy, Fine-Needle/methods , Thyroid Gland/pathology , Thyroid Neoplasms/diagnosis , Decision Support Techniques , Humans , Neural Networks, Computer
20.
Comput Biol Med ; 41(2): 98-109, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21236419

ABSTRACT

Error processing in subjects performing actions has been associated with the Event-Related Potential (ERP) components called Error-Related Negativity (ERN) and Error Positivity (Pe). In this paper, features based on statistical measures of the sample of averaged ERP recordings are used for classifying correct from incorrect actions. Three feature selection techniques were used and compared. Classification was done by means of a kNN and a Support Vector Machines (SVM) classifier. The use of a leave-one-out approach in the feature selection provided sensitivity and specificity values concurrently higher than or equal to 87.5%, for both classifiers. The classification results were significantly better for the time window that included only the ERN, as compared to time windows including also Pe.


Subject(s)
Algorithms , Electroencephalography/methods , Evoked Potentials/physiology , Fuzzy Logic , Signal Processing, Computer-Assisted , Analysis of Variance , Computational Biology , Humans , Reaction Time/physiology , Reproducibility of Results , Sensitivity and Specificity
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