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1.
Med Microbiol Immunol ; 205(4): 371-9, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27138606

ABSTRACT

Acute respiratory distress syndrome (ARDS) is today a leading cause of hospitalization in intensive care unit (ICU). ARDS and pneumonia are closely related to critically ill patients; however, the etiologic agent is not always identified. The presence of human herpes simplex virus 1, human cytomegalovirus and Epstein-Barr virus in respiratory samples of critically ill patients is increasingly reported even without canonical immunosuppression. The main aim of this study was to better understand the significance of herpesviruses finding in lower respiratory tract of ARDS patients hospitalized in ICU. The presence of this group of herpesviruses, in addition to the research of influenza viruses and other common respiratory viruses, was investigated in respiratory samples from 54 patients hospitalized in ICU, without a known microbiological causative agent. Moreover, the immunophenotype of each patient was analyzed. Herpesviruses DNA presence in the lower respiratory tract seemed not attributable to an impaired immunophenotype, whereas a significant correlation was observed between herpesviruses positivity and influenza virus infection. A higher ICU mortality was significantly related to the presence of herpesvirus infection in the lower respiratory tract as well as to impaired immunophenotype, as patients with poor outcome showed severe lymphopenia, affecting in particular T (CD3+) cells, since the first days of ICU hospitalization. In conclusion, these results indicate that herpesviruses lower respiratory tract infection, which occurs more frequently following influenza virus infection, can be a negative prognostic marker. An independent risk factor for ICU patients with ARDS is an impaired immunophenotype.


Subject(s)
Herpesviridae Infections/complications , Herpesviridae Infections/pathology , Herpesviridae/isolation & purification , Respiratory Distress Syndrome/epidemiology , Respiratory Distress Syndrome/etiology , Respiratory Tract Infections/complications , Respiratory Tract Infections/pathology , Adult , Aged , Aged, 80 and over , Female , Hospitalization , Humans , Immunophenotyping , Intensive Care Units , Lymphopenia/etiology , Male , Middle Aged , Respiratory Distress Syndrome/mortality , Retrospective Studies , Survival Analysis , T-Lymphocytes/immunology
2.
Mol Cell Probes ; 29(6): 408-413, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26334289

ABSTRACT

Different viruses can be responsible for similar clinical manifestations of respiratory infections. Thus, the etiological diagnosis of respiratory viral diseases requires the detection of a large number of viruses. In this study, 6 duplex real-time PCR assays, using EvaGreen intercalating dye, were developed to detect 12 major viruses responsible for respiratory diseases: influenza A and B viruses, enteroviruses (including enterovirus spp, and rhinovirus spp), respiratory syncytial virus, human metapneumovirus, coronaviruses group I (of which CoV 229E and CoV NL63 are part) and II (including CoV OC43 and CoV HKU1), parainfluenza viruses type 1, 2, 3 and 4, human adenoviruses and human bocaviruses. The 2 target viruses of each duplex reaction were distinguishable by the melting temperatures of their amplicons. The 6 duplex real time PCR assays were applied for diagnostic purpose on 202 respiratory samples from 157 patients. One hundred fifty-seven samples were throat swabs and 45 were bronchoalveolar lavages. The results of the duplex PCR assays were confirmed by comparison with a commercial, validated, assay; in addition, the positive results were confirmed by sequencing. The analytical sensitivity of the duplex PCR assays varied from 10(3) copies/ml to 10(4) copies/ml. For parainfluenza virus 2 only it was 10(5) copies/ml. Seventy clinical samples (35%) from 55 patients (30 children and 25 adults) were positive for 1 or more viruses. In adult patients, influenza A virus was the most frequently detected respiratory virus followed by rhinoviruses. In contrast, respiratory syncytial virus was the most common virus in children, followed by enteroviruses, influenza A virus and coronavirus NL63. The small number of samples/patients does not allow us to draw any epidemiological conclusion. Altogether, the results of this study indicate that the 6 duplex PCR assays described in this study are sensitive, specific and cost-effective. Thus, this assay could be particularly useful to identify the main respiratory viruses directly from clinical samples, after nucleic acid extraction, and, also, to screen a large number of patients for epidemiological studies.


Subject(s)
Adenoviridae/isolation & purification , Human bocavirus/isolation & purification , Multiplex Polymerase Chain Reaction/methods , RNA Viruses/isolation & purification , Respiratory Tract Infections/virology , Adenoviridae/classification , Coronavirus/classification , Coronavirus/isolation & purification , Enterovirus/classification , Enterovirus/isolation & purification , Human bocavirus/classification , Humans , Influenza A virus/classification , Influenza A virus/isolation & purification , Influenza B virus/classification , Influenza B virus/isolation & purification , Metapneumovirus/classification , Metapneumovirus/isolation & purification , RNA Viruses/classification , Respiratory Syncytial Viruses/classification , Respiratory Syncytial Viruses/isolation & purification , Respirovirus/classification , Respirovirus/isolation & purification , Rubulavirus/classification , Rubulavirus/isolation & purification
3.
J Clin Virol ; 70: 1-6, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26305810

ABSTRACT

BACKGROUND: In light of their regulatory role, changes in the expression of Polyomavirus JC (JCPyV) microRNAs may be relevant for virus reactivation and the development of progressive multifocal leukoencephalopathy (PML). OBJECTIVES: To investigate the presence of JCPyV-DNA and JCPyV microRNA expression in clinical specimens of patients at risk for PML. STUDY DESIGN: The JCPyV-DNA and microRNA status was assessed in peripheral blood mononuclear cells (PBMCs) and plasma from 100 HIV patients, in serum and cerebrospinal fluid (CSF) from 14 HIV PML patients and in PBMCs and plasma from 50 healthy controls using Multiplex real-time PCR and JCPyV miRNA-J1-3p and -5p stem-loop RT-PCR. The JCPyV-DNA microRNA-expressing region was also sequenced. RESULTS: A positive JCPyV-DNA status was more prevalent in HIV patients (67%, 67/100) compared to healthy controls (18%, 9/50). Among these, 46% and 42% of the HIV patients and 18% and 0% of the healthy controls were positive based on PBMC and plasma determinations, respectively. PBMC JCPyV microRNA positivity was observed in 22 out of 46 (48%) JCPyV+ HIV patients and in 3 out of 9 (33%) JCPyV+ healthy controls. Moreover, JCPyV microRNAs in exosomes were found in 6 out of 100 (6%) HIV plasma samples, in 12 out of 50 (24%) healthy samples, in 6 out of 14 (43%) serum samples, and in 3 out of 5 (60%) HIV PML CSF samples. Of note, the JCPyV-DNA load was inversely correlated with expression of the viral microRNA. The JCPyV microRNA genomic expression region showed a different combination of three mutations. CONCLUSIONS: The low levels of JCPyV microRNA expression in HIV patients with high JCPyV-DNA prevalence observed in this study highlight the potential clinical relevance of JCPyV microRNAs in PML risk assessment.


Subject(s)
JC Virus/genetics , Leukoencephalopathy, Progressive Multifocal/virology , MicroRNAs/genetics , RNA, Viral/genetics , Viral Load , Base Sequence , Coinfection , DNA, Viral , Female , Gene Expression , Genome, Viral , HIV Infections/epidemiology , HIV Infections/virology , Humans , Leukocytes, Mononuclear/virology , Leukoencephalopathy, Progressive Multifocal/epidemiology , Male , MicroRNAs/blood , MicroRNAs/cerebrospinal fluid , MicroRNAs/chemistry , Molecular Sequence Data , Nucleic Acid Conformation , Prevalence , RNA, Viral/blood , RNA, Viral/cerebrospinal fluid , RNA, Viral/chemistry , Sequence Analysis, DNA
4.
J Biotechnol ; 210: 85-90, 2015 Sep 20.
Article in English | MEDLINE | ID: mdl-26091771

ABSTRACT

Human and avian influenza A viruses, associated with seasonal epidemics and occasionally with pandemics, have a high impact on public health. The development of new antivirals to counteract the emergence of drug resistant influenza virus variants is a main concern. The aim of this study was to develop systems for the efficient and stable expression of small therapeutic RNAs into influenza virus infected cells in order to get further insights on the efficacy of nucleic acid-based antiviral strategies. To this end, lentiviral vectors expressing either microRNAs or antisense-RNAs targeting the 5' end of the PA, PB1 and PB2 influenza virus genomic sequences were generated. Derivative recombinant lentiviral particles were employed to transduce the influenza virus highly susceptible human alveolar basal epithelial A549 cells. The expression of both RNA molecules led to a reduction up to 3 logs of the viral titer when transduced A549 cells were challenged with different human and avian subtypes of influenza type A virus. Importantly, no inhibition of influenza type B virus was observed. Overall our data support the development of nucleic acid-based antiviral strategies to control human and avian influenza A virus infection.


Subject(s)
Influenza A virus/physiology , RNA, Antisense/genetics , RNA-Dependent RNA Polymerase/antagonists & inhibitors , Viral Proteins/antagonists & inhibitors , 5' Untranslated Regions/drug effects , Antiviral Agents/pharmacology , Cell Line , Genetic Vectors/pharmacology , Humans , Influenza A virus/enzymology , Influenza A virus/genetics , Lentivirus/genetics , RNA-Dependent RNA Polymerase/genetics , RNAi Therapeutics , Viral Proteins/genetics , Virus Replication
5.
J Neurovirol ; 21(6): 666-70, 2015 Dec.
Article in English | MEDLINE | ID: mdl-25678142

ABSTRACT

Polyomavirus JC (JCPyV) reactivation and development of progressive multifocal leukoencephalopathy is a health concern in multiple sclerosis patients under natalizumab therapy. Here, the JCPyV microRNA-J1-3p and microRNA-J1-5p expressions and genomic variability were investigated in blood and urine samples of multiple sclerosis patients before and under natalizumab therapy and in healthy controls. The two JCPyV microRNAs were detected in the JCPyV-DNA-positive peripheral blood mononuclear cell samples and in the exosomes derived from plasma and urine obtained from JCPyV-DNA-positive and JCPyV-DNA-negative patients. In particular, the increased JCPyV microRNA expression in samples of multiple sclerosis patients under natalizumab therapy was consistent with the high JCPyV-DNA positivity observed in these samples. Moreover, JCPyV microRNA genomic region showed few nucleotide differences in samples obtained from blood and urine of multiple sclerosis patients and healthy controls. Overall, these data suggest a potential role of the JCPyV microRNA expression in counteracting the viral reactivation to maintain JCPyV asymptomatic persistence in the host.


Subject(s)
Immunologic Factors/therapeutic use , MicroRNAs/blood , MicroRNAs/urine , Multiple Sclerosis/virology , Natalizumab/therapeutic use , Humans , JC Virus/genetics , Multiple Sclerosis/drug therapy , RNA, Viral/analysis , Reverse Transcriptase Polymerase Chain Reaction
6.
Neurol Neuroimmunol Neuroinflamm ; 2(1): e58, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25610882

ABSTRACT

OBJECTIVE: To evaluate the frequency of JC polyomavirus (JCPyV) infection and anti-JCPyV antibodies in patients with multiple sclerosis under natalizumab therapy. METHODS: Presence of anti-JCPyV antibodies and JCPyV DNA was analyzed in 39 patients with relapsing-remitting multiple sclerosis undergoing natalizumab therapy. Anti-JCPyV antibodies were evaluated in serum by a 2-step virus-like particle-based ELISA assay (Stratify), and JCPyV DNA was evaluated in peripheral blood mononuclear cells, plasma, and urine by quantitative PCR. The anti-JCPyV antibodies were evaluated in serum samples collected at the same time or later than those collected for DNA analysis. RESULTS: JCPyV DNA was detected in 59% of patients, and anti-JCPyV antibodies were present in 67%. JCPyV DNA occurred more often in blood than in urine. Anti-JCPyV antibodies were observed in 70% of the JCPyV-infected patients, and JCPyV DNA was detected in 50% of the patients without anti-JCPyV antibodies. When JCPyV DNA was investigated in blood and urine the frequency of infection was higher than previously described. CONCLUSION: Under these experimental conditions, with respect to the observed frequency of JCPyV infection, the sensitivity of the anti-JCPyV antibody assay was lower than expected.

7.
Viruses ; 6(11): 4437-46, 2014 Nov 18.
Article in English | MEDLINE | ID: mdl-25412364

ABSTRACT

Co-circulation of two influenza B virus lineages, B/Yamagata and B/Victoria, has been recognized since the late 1980s. The assessment of the prevalent lineage and the group of viruses in circulation is of importance in order to decide on the vaccine composition and evaluate its efficacy. The molecular characterization of influenza B viruses in circulation has been the aim of this study; this was approached by identifying and locating nucleotide substitutions in the influenza B virus hemagglutinin (HA) and neuraminidase (NA), specific for the lineage and/or clade. By the alignment of 3456 sequences from the influenza GISAID EpiFlu database, a high number of lineage- and group-specific nucleotide positions have been observed in the HA gene, but not in the NA gene. Additionally, an RT-PCR method has been developed, applicable directly to clinical specimens, which amplifies a short HA region that includes a group of unique molecular signatures. Twenty eight influenza B virus-positive respiratory specimens, collected in Tuscany in the seasons 2012-2013 and 2013-2014, were analyzed. The results revealed two clearly distinguishable patterns: one, more frequent, was characterized by all of the nucleotide changes associated with the B/Yamagata lineage (in most cases of Group 2), whereas the other exhibited all of the changes associated with the B/Victoria lineage. It can be concluded that the analysis of this short HA sequence can permit a rapid, highly sensitive determination of influenza B virus lineages and clades.


Subject(s)
Genetic Markers , Influenza B virus/classification , Influenza B virus/genetics , Influenza, Human/virology , Molecular Diagnostic Techniques/methods , Reverse Transcriptase Polymerase Chain Reaction/methods , Virology/methods , Genotype , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Humans , Neuraminidase/genetics , Point Mutation , Polymorphism, Single Nucleotide , Sensitivity and Specificity , Time Factors , Viral Proteins/genetics
8.
Case Rep Med ; 2014: 560208, 2014.
Article in English | MEDLINE | ID: mdl-24527039

ABSTRACT

Pandemic influenza virus A(H1N1) 2009 was associated with a higher risk of viral pneumonia in comparison with seasonal influenza viruses. The influenza season 2011-2012 was characterized by the prevalent circulation of influenza A(H3N2) viruses. Whereas most H3N2 patients experienced mild, self-limited influenza-like illness, some patients were at increased risk for influenza complications because of age or underlying medical conditions. Cases presented were patients admitted to the Intensive Care Unit (ICU) of ECMO referral center (Careggi Teaching Hospital, Florence, Italy). Despite extracorporeal membrane oxygenation treatment (ECMO), one patient with H3N2-induced ARDS did not survive. Our experience suggests that viral aetiology is becoming more important and hospitals should be able to perform a fast differential diagnosis between bacterial and viral aetiology.

9.
Virus Res ; 175(2): 151-4, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23639426

ABSTRACT

Exploring the reassortment ability of the 2009 pandemic H1N1 (A/H1N1pdm09) influenza virus with other circulating human or avian influenza viruses is the main concern related to the generation of more virulent or new variants having implications for public health. After different coinfection experiments in human A549 cells, by using the A/H1N1pdm09 virus plus one of human seasonal influenza viruses of H1N1 and H3N2 subtype or one of H11, H10, H9, H7 and H1 avian influenza viruses, several reassortant viruses were obtained. Among these, the HA of H1N1 was the main segment of human seasonal influenza virus reassorted in the A/H1N1pdm09 virus backbone. Conversely, HA and each of the three polymerase segments, alone or in combination, of the avian influenza viruses mainly reassorted in the A/H1N1pdm09 virus backbone. Of note, A/H1N1pdm09 viruses that reassorted with HA of H1N1 seasonal human or H11N6 avian viruses or carried different combination of avian origin polymerase segments, exerted a higher replication effectiveness than that of the parental viruses. These results confirm that reassortment of the A/H1N1pdm09 with circulating low pathogenic avian influenza viruses should not be misjudged in the prediction of the next pandemic.


Subject(s)
Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/epidemiology , Influenza, Human/virology , Reassortant Viruses/genetics , Reassortant Viruses/isolation & purification , Cell Line , Humans , Influenza A Virus, H1N1 Subtype/growth & development , Risk Assessment , Virulence , Virus Replication
10.
J Virol Methods ; 189(2): 265-70, 2013 May.
Article in English | MEDLINE | ID: mdl-23499313

ABSTRACT

A real-time PCR followed by high resolution melting analysis (HRMA) was developed, for rapid detection of antiviral resistance markers in influenza A viruses, of both H1N1 and H3N2 subtypes. The targets of these assays were the nucleotide substitution G806A (S31N mutation) in the M gene as marker of resistance to adamatanes in influenza viruses A(H3N2), the substitution A356T (E119V mutation) in the N2 gene of influenza viruses A(H3N2) and the substitution C823T (H274Y mutation) in the N1 gene of the pandemic A(H1N1) 2009 virus as markers of oseltamivir resistance. First, the designed primers and the overall protocol of the HRMA were validated using already characterized viral isolates either containing or lacking changes at the tested codons. Then, HRMA was used to search for the marker of oseltamivir resistance in 75 clinical samples, H1N1 2009 positives, analyzed previously by pyrosequencing and Sanger sequencing, and of both adamantane-derivatives and oseltamivir resistance in 57 H3N2 positive clinical samples. The results of HRMA of the H1N1 2009 isolates were in agreement with those obtained by sequencing. As regards the H3N2 isolates, HRMA revealed a widespread resistance to adamantanes with 89.5% nucleotide substitution G806A, while 3% were resistant to oseltamivir (A356T change). HRMA, applied to the detection of markers of resistance to antiviral drugs against influenza A viruses, confirmed to be a procedure flexible, low cost and time-saving, suitable for application to epidemiological surveys and in clinical settings for diagnostic purposes.


Subject(s)
Antiviral Agents/pharmacology , Drug Resistance, Viral , Influenza A Virus, H1N1 Subtype/drug effects , Influenza A Virus, H3N2 Subtype/drug effects , Molecular Diagnostic Techniques/methods , RNA, Viral/genetics , Real-Time Polymerase Chain Reaction/methods , Adult , Amino Acid Substitution , Child , Child, Preschool , Humans , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H3N2 Subtype/genetics , Microbial Sensitivity Tests/methods , Mutation, Missense , Transition Temperature , Viral Proteins/genetics
11.
J Virol Methods ; 184(1-2): 113-6, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22659066

ABSTRACT

For the early detection of the H275Y mutation as a marker of oseltamivir resistance in A(H1N1) pandemic strains, a sensitive and specific pyrosequencing assay was developed. This assay analyses a region 99nts long, encompassing the H275Y site, amplified by a nested PCR. Seventy-five respiratory specimens, obtained from 62 patients during the pandemic and in the 2010-2011 influenza season, in Tuscany, were tested. Resistant strains were demonstrated in 10 patients. In three other patients, resistant and sensitive variants were found. This pyrosequencing assay may be a useful method for monitoring the spread of resistant influenza H1N1 2009 strains.


Subject(s)
Antiviral Agents/pharmacology , Influenza A Virus, H1N1 Subtype/drug effects , Oseltamivir/pharmacology , Polymerase Chain Reaction/methods , RNA, Viral/chemistry , RNA, Viral/genetics , Sequence Analysis, DNA/methods , Adolescent , Adult , Amino Acid Substitution , Child , Child, Preschool , Humans , Infant , Infant, Newborn , Influenza, Human/virology , Italy , Microbial Sensitivity Tests/methods , Mutation, Missense
12.
J Neurovirol ; 18(1): 55-61, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22281875

ABSTRACT

Polyomavirus JC (JCV) reactivation causing progressive multifocal leukoencephalopathy is a main concern during biological therapies. Here, JCV reactivation in patients suffering from immune-mediated diseases after a long-term treatment with anti-tumor necrosis factor alpha (TNF-α) inhibitor infliximab was investigated. Peripheral mononuclear blood cells (PBMC), plasma and urine samples were obtained from 61 immune-mediated diseases patients treated or not with infliximab in combination with steroid and other immunomodulators and from 20 healthy donors. JCV DNA was transiently detected in 12 PBMC of 40 patients at different doses of infliximab with a higher prevalence than that of the 21 patients untreated. Conversely, a stable JCV positivity in urine of treated and untreated patients was detected. Sequencing the noncoding control region (NCCR), all samples exhibited the archetype structure with few mutations in transcriptional factor binding regions. The consequence of anti-TNF-α treatment on viral persistence was examined monitoring Torquetenovirus viremia and investigating the TNF-α-induced microRNA regulators of transcriptional factors, with a binding site on NCCR. Although infliximab treatment in this study did not affect directly JCV reactivation, further investigation on host factor(s) regulated by it will be of warranty in the understanding the mechanism(s) that may affect viral persistence.


Subject(s)
Antibodies, Monoclonal/adverse effects , JC Virus/genetics , Leukocytes, Mononuclear/virology , Leukoencephalopathy, Progressive Multifocal/virology , Adult , Aged , Aged, 80 and over , Antibodies, Monoclonal/administration & dosage , Antibodies, Monoclonal/therapeutic use , Case-Control Studies , Female , Humans , Immunologic Factors/administration & dosage , Immunologic Factors/therapeutic use , Infliximab , JC Virus/pathogenicity , Leukocytes, Mononuclear/immunology , Leukoencephalopathy, Progressive Multifocal/blood , Leukoencephalopathy, Progressive Multifocal/immunology , Leukoencephalopathy, Progressive Multifocal/urine , Male , Middle Aged , Risk Assessment , Tumor Necrosis Factor-alpha/antagonists & inhibitors , Tumor Necrosis Factor-alpha/immunology , Virus Activation/drug effects , Virus Activation/immunology
13.
Antiviral Res ; 92(1): 64-72, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21741410

ABSTRACT

In a previous study a 15-mer phosphorothioate oligonucleotide (S-ON) derived from the packaging signal in the 5' end of segment 1 (PB2) of influenza A virus (designated 5-15b) proved markedly inhibitory to virus replication. Here we investigated whether analogous inhibitory S-ONs targeting the 5' end of segments 2 (PB1) and 3 (PA) could be identified and whether viral resistance to S-ONs can be developed. Similar to our earlier result, 20-mer S-ONs reproducing the 5' ends of segments 2 or 3 (complementary to the 3'-coding regions of PB1 and PA, respectively) exerted a powerful antiviral activity against a variety of influenza A virus subtypes in MDCK cells. Serial passage of the A/Taiwan/1/86 H1N1 strain in the presence of S-ON 5-15b or its antisense as5-15b analogue showed that mutant viruses with reduced susceptibility to the S-ON could indeed be generated, although the resistant viruses displayed reduced replicative fitness. Sequencing the resistant viruses identified mutations in the PB1, PB2, PA and M1 genes. Introduction of these changes into the A/PR/8/34 H1N1 strain by reverse genetics, suggested that alterations to RNA function in the packaging regions of segments 2 and 3 were important in developing resistance to S-ON inhibition. However, many of the other sequence changes induced by S-ON treatment were markedly deleterious to virus fitness. We conclude that packaging signals in the influenza A virus polymerase segments provide feasible targets for nucleic acid-based antivirals that may be difficult for the virus to evade through resistance mutations.


Subject(s)
Antiviral Agents/pharmacology , Influenza A virus/physiology , Phosphorothioate Oligonucleotides/pharmacology , RNA-Dependent RNA Polymerase/genetics , Viral Proteins/genetics , Virus Assembly , Animals , Cell Line , Drug Resistance, Multiple, Viral , Humans , Influenza A Virus, H1N1 Subtype/drug effects , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/physiology , Influenza A virus/drug effects , Influenza A virus/genetics , Mutation , RNA, Viral/genetics , RNA, Viral/metabolism , RNA-Dependent RNA Polymerase/metabolism , Viral Proteins/metabolism , Virus Assembly/drug effects , Virus Replication/drug effects
14.
BMC Pulm Med ; 11: 2, 2011 Jan 11.
Article in English | MEDLINE | ID: mdl-21223541

ABSTRACT

BACKGROUND: Since the first outbreak of a respiratory illness caused by H1N1 virus in Mexico, several reports have described the need of intensive care or extracorporeal membrane oxygenation (ECMO) assistance in young and often healthy patients. Here we describe our experience in H1N1-induced ARDS using both ventilation strategy and ECMO assistance. METHODS: Following Italian Ministry of Health instructions, an Emergency Service was established at the Careggi Teaching Hospital (Florence, Italy) for the novel pandemic influenza. From Sept 09 to Jan 10, all patients admitted to our Intensive Care Unit (ICU) of the Emergency Department with ARDS due to H1N1 infection were studied. All ECMO treatments were veno-venous. H1N1 infection was confirmed by PCR assayed on pharyngeal swab, subglottic aspiration and bronchoalveolar lavage. Lung pathology was evaluated daily by lung ultrasound (LUS) examination. RESULTS: A total of 12 patients were studied: 7 underwent ECMO treatment, and 5 responded to protective mechanical ventilation. Two patients had co-infection by Legionella Pneumophila. One woman was pregnant. In our series, PCR from bronchoalveolar lavage had a 100% sensitivity compared to 75% from pharyngeal swab samples. The routine use of LUS limited the number of chest X-ray examinations and decreased transportation to radiology for CT-scan, increasing patient safety and avoiding the transitory disconnection from ventilator. No major complications occurred during ECMO treatments. In three cases, bleeding from vascular access sites due to heparin infusion required blood transfusions. Overall mortality rate was 8.3%. CONCLUSIONS: In our experience, early ECMO assistance resulted safe and feasible, considering the life threatening condition, in H1N1-induced ARDS. Lung ultrasound is an effective mean for daily assessment of ARDS patients.


Subject(s)
Extracorporeal Membrane Oxygenation , Influenza A Virus, H1N1 Subtype , Influenza, Human/therapy , Positive-Pressure Respiration , Respiratory Distress Syndrome/therapy , Respiratory Distress Syndrome/virology , Adolescent , Adult , Bronchoalveolar Lavage , Female , Humans , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/diagnosis , Lung/diagnostic imaging , Male , Middle Aged , Respiratory Distress Syndrome/diagnostic imaging , Respiratory Distress Syndrome/mortality , Reverse Transcriptase Polymerase Chain Reaction , Treatment Outcome , Ultrasonography
15.
J Med Virol ; 83(1): 1-4, 2011 Jan.
Article in English | MEDLINE | ID: mdl-21108332

ABSTRACT

Lymphocytopenia has been reported in adults with pandemic influenza A/H1N1 2009 infection, but data in children are inconclusive. Data from 76 children presented with flu-like symptoms between July and November 2009 and tested for pandemic influenza A/H1N1 2009 virus and white blood cell (WBC) counts were analyzed. Samples from 37 (48.7%) children resulted in a positive PCR assay for pandemic influenza A/H1N1 2009 virus. When comparing data from these children with data from 39 (51.3%) children with uncomplicated flu-like illness and negative PCR assay for pandemic influenza A/H1N1 2009 virus, no difference in disease duration, median age, red blood cell count, hemoglobin concentration, C reactive protein concentration, and absolute neutrophil count was observed, whereas significant differences were apparent when considering WBC count, relative and absolute lymphocyte count, absolute lymphocyte count z-score, and platelet count. Receiver operating characteristic curve analysis revealed that the best absolute lymphocyte count and absolute lymphocyte count z-score cut-points that simultaneously maximized sensitivity and specificity were 2,256 cells/µl and -0.89, respectively, sensitivity being 0.81 (95% CI: 0.68-0.94), specificity 0.87 (95% CI: 0.77-0.98), positive predictive value 0.85 (95% CI: 0.74-0.97), and negative predictive value 0.83 (95% CI: 0.71-0.94). In conclusion, lymphocytopenia is a marker for influenza A/H1N1 2009 virus infection in children. Absolute lymphocyte count <2,556 cells/µl or absolute lymphocyte count z-score < -0.89 may be useful cut-offs to discriminate against children at higher risk of infection during epidemics. Considering that the pandemic virus is highly likely to continue to circulate in the coming winter season, these findings provide direct and practical implications for the near future.


Subject(s)
Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/diagnosis , Influenza, Human/virology , Lymphopenia/diagnosis , Adolescent , Biomarkers , Child , Child, Preschool , Female , Humans , Infant , Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza, Human/immunology , Influenza, Human/pathology , Leukocyte Count , Male , Predictive Value of Tests , RNA, Viral/genetics , ROC Curve , Reverse Transcriptase Polymerase Chain Reaction , Sensitivity and Specificity
16.
Virol J ; 7: 272, 2010 Oct 15.
Article in English | MEDLINE | ID: mdl-20950445

ABSTRACT

BACKGROUND: PARV4 is a new member of the Parvoviridae family not closely related to any of the known human parvoviruses. Viremia seems to be a hallmark of PARV4 infection and viral DNA persistence has been demonstrated in a few tissues. Till now, PARV4 has not been associated with any disease and its prevalence in human population has not been clearly established. This study was aimed to assess the tissue distribution and the ability to persist of PARV4 in comparison to parvovirus B19 (B19V). RESULTS: PARV4 and B19V DNA detection was carried out in various tissues of individuals without suspect of acute viral infection, by a real time PCR and a nested PCR, targeting the ORF2 and the ORF1 respectively. Low amount of PARV4 DNA was found frequently (>40%) in heart and liver of adults individuals, less frequently in lungs and kidneys (23,5 and 18% respectively) and was rare in bone marrow, skin and synovium samples (5,5%, 4% and 5%, respectively). By comparison, B19V DNA sequences were present in the same tissues with a higher frequency (significantly higher in myocardium, skin and bone marrow) except than in liver where the frequency was the same of PARV4 DNA and in plasma samples where B19V frequency was significantly lower than that of PARV4 CONCLUSIONS: The particular tropism of PARV4 for liver and heart, here emerged, suggests to focus further studies on these tissues as possible target for viral replication and on the possible role of PARV4 infection in liver and heart diseases. Neither bone marrow nor kidney seem to be a common target of viral replication.


Subject(s)
Carrier State/epidemiology , DNA, Viral/isolation & purification , Parvoviridae Infections/epidemiology , Parvoviridae/classification , Parvoviridae/isolation & purification , Adult , Aged , Aged, 80 and over , Bone Marrow/virology , Carrier State/virology , DNA, Viral/genetics , Heart/virology , Humans , Kidney/virology , Liver/virology , Lung/virology , Middle Aged , Open Reading Frames , Parvoviridae/genetics , Parvoviridae Infections/virology , Plasma/virology , Polymerase Chain Reaction , Skin/virology , Synovial Membrane/virology , Viral Tropism
17.
Virology ; 408(2): 167-73, 2010 Dec 20.
Article in English | MEDLINE | ID: mdl-20947115

ABSTRACT

To investigate the molecular adaptation of influenza viruses during natural interspecies transmission, we performed a phenotypic and genotypic analysis of a low-pathogenic duck H7N3 influenza virus after experimental passages in turkey and quail. Results obtained showed differences in the HA receptor-binding and in NA enzyme activities in viruses recovered after passages in quail, compared to those obtained from passages in turkey. Sequencing of the HA, NA and genes of internal proteins of the viruses obtained from quail and turkey, identified several amino acid substitutions in comparison with the progenitor virus. Of note, in the quail-adapted viruses the emergence of a 23-amino acid deletion in the stalk of the NA and the introduction of a glycosylation site in the HA were a reminiscence of changes typically observed in nature confirming a potential role of the quail in the adaptation of wild birds viruses to domestic poultry.


Subject(s)
Influenza A Virus, H7N3 Subtype/physiology , Influenza A Virus, H7N3 Subtype/pathogenicity , Influenza in Birds/virology , Adaptation, Biological/genetics , Amino Acid Sequence , Animals , Carbohydrate Sequence , Coturnix , Ducks , Genes, Viral , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/physiology , Influenza A Virus, H7N3 Subtype/genetics , Models, Molecular , Molecular Sequence Data , Mutation , Neuraminidase/genetics , Neuraminidase/physiology , Oligosaccharides/chemistry , Oligosaccharides/physiology , Receptors, Virus/physiology , Sequence Homology, Amino Acid , Species Specificity , Turkeys , Virulence/genetics , Virulence/physiology
19.
Avian Dis ; 54(1 Suppl): 555-7, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20521693

ABSTRACT

In order to investigate viral adaptation mechanisms to poultry, we performed serial in vivo passages of a wild bird low pathogenicity avian influenza isolate of the H7N3 subtype (A/mallard/Italy/33/01) in three different domestic species (chicken, turkey, and Japanese quail). The virus under study was administered via natural routes at the dose of 10(6) egg infective dose50/ 0.1 ml to chickens, turkeys, and quails in order to investigate the clinical susceptibility and the shedding levels after infection. Multiple in vivo passages of the virus were performed by serially infecting groups of five naive birds of each species, with samples collected from a previously infected group. Quails and turkeys were susceptible to infection for 10 serial passages, whereas chickens were susceptible to two cycles of infection only. Infection of chicken with the quail- and turkey-adapted viruses showed an increased pathogenicity and/or shedding, causing more severe clinical signs and/or higher levels of viral excretion compared to the original strain. The data obtained herein suggest that infection of selected avian species may facilitate the adaptation of avian influenza viruses originating from the wild bird reservoir to chicken. This is the first time turkey has been shown to act as a species in which a virus from the wild reservoir can increase its replication activity in other domestic species.


Subject(s)
Chickens , Coturnix , Influenza A virus/pathogenicity , Influenza in Birds/virology , Quail/virology , Turkeys/virology , Adaptation, Physiological , Animals , Influenza A virus/classification , Virus Cultivation
20.
Intervirology ; 52(5): 279-82, 2009.
Article in English | MEDLINE | ID: mdl-19672101

ABSTRACT

BACKGROUND: Our previous reports suggested a possible association between parvovirus B19 (B19V) infection and systemic sclerosis (SSc), based on higher prevalence of B19V DNA in SSc patients in respect to controls. METHODS: In the present study, to further evaluate the differences in the pattern of B19 infection in SSc, skin biopsies and bone marrow samples from patients and controls were analysed for B19V DNA detection, genotyping and viral expression. RESULTS: B19V DNA was detected in skin biopsies from 39/49 SSc patients and from 20/28 controls. Bone marrow showed positive in 17/29 SSc patients, 5/21 haematological patients and 0/10 healthy controls. Genotype 1 was more frequent in skin and bone marrow from patients than from controls. Simultaneous persistence of 2 genotypes was detected in SSc skin and bone marrow samples, never in controls. Viral mRNA for capsid protein was detected in the skin of genotype 1-positive patients and not in control skins. CONCLUSION: The results outline some differences in the rate of persistence of B19V DNA, in the simultaneous persistence of 2 genotypes and in the pattern of viral expression among SSc patients and controls.


Subject(s)
Parvoviridae Infections/epidemiology , Parvoviridae Infections/virology , Parvovirus B19, Human/isolation & purification , Scleroderma, Systemic/complications , Scleroderma, Systemic/etiology , Adolescent , Adult , Aged , Bone Marrow/virology , Female , Humans , Male , Middle Aged , Prevalence , Skin/virology , Young Adult
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