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1.
ACS Nano ; 18(18): 11644-11654, 2024 May 07.
Article in English | MEDLINE | ID: mdl-38653474

ABSTRACT

Nanophotonic devices excel at confining light into intense hot spots of electromagnetic near fields, creating exceptional opportunities for light-matter coupling and surface-enhanced sensing. Recently, all-dielectric metasurfaces with ultrasharp resonances enabled by photonic bound states in the continuum (BICs) have unlocked additional functionalities for surface-enhanced biospectroscopy by precisely targeting and reading out the molecular absorption signatures of diverse molecular systems. However, BIC-driven molecular spectroscopy has so far focused on end point measurements in dry conditions, neglecting the crucial interaction dynamics of biological systems. Here, we combine the advantages of pixelated all-dielectric metasurfaces with deep learning-enabled feature extraction and prediction to realize an integrated optofluidic platform for time-resolved in situ biospectroscopy. Our approach harnesses high-Q metasurfaces specifically designed for operation in a lossy aqueous environment together with advanced spectral sampling techniques to temporally resolve the dynamic behavior of photoswitchable lipid membranes. Enabled by a software convolutional neural network, we further demonstrate the real-time classification of the characteristic cis and trans membrane conformations with 98% accuracy. Our synergistic sensing platform incorporating metasurfaces, optofluidics, and deep learning reveals exciting possibilities for studying multimolecular biological systems, ranging from the behavior of transmembrane proteins to the dynamic processes associated with cellular communication.


Subject(s)
Artificial Intelligence , Surface Properties , Spectrum Analysis/methods , Membrane Lipids/chemistry , Deep Learning
2.
Proc Natl Acad Sci U S A ; 117(34): 20607-20614, 2020 08 25.
Article in English | MEDLINE | ID: mdl-32788360

ABSTRACT

The mitochondrial contact site and cristae organizing system (MICOS) is a multisubunit protein complex that is essential for the proper architecture of the mitochondrial inner membrane. MICOS plays a key role in establishing and maintaining crista junctions, tubular or slit-like structures that connect the cristae membrane with the inner boundary membrane, thereby ensuring a contiguous inner membrane. MICOS is enriched at crista junctions, but the detailed distribution of its subunits around crista junctions is unclear because such small length scales are inaccessible with established fluorescence microscopy. By targeting individually activated fluorophores with an excitation beam featuring a central zero-intensity point, the nanoscopy method called MINFLUX delivers single-digit nanometer-scale three-dimensional (3D) resolution and localization precision. We employed MINFLUX nanoscopy to investigate the submitochondrial localization of the core MICOS subunit Mic60 in relation to two other MICOS proteins, Mic10 and Mic19. We demonstrate that dual-color 3D MINFLUX nanoscopy is applicable to the imaging of organellar substructures, yielding a 3D localization precision of ∼5 nm in human mitochondria. This isotropic precision facilitated the development of an analysis framework that assigns localization clouds to individual molecules, thus eliminating a source of bias when drawing quantitative conclusions from single-molecule localization microscopy data. MINFLUX recordings of Mic60 indicate ringlike arrangements of multiple molecules with a diameter of 40 to 50 nm, suggesting that Mic60 surrounds individual crista junctions. Statistical analysis of dual-color MINFLUX images demonstrates that Mic19 is generally in close proximity to Mic60, whereas the spatial coordination of Mic10 with Mic60 is less regular, suggesting structural heterogeneity of MICOS.


Subject(s)
Membrane Proteins/metabolism , Mitochondria/metabolism , Mitochondrial Membranes/metabolism , Mitochondrial Proteins/metabolism , HeLa Cells , Humans , Microscopy, Fluorescence/methods
3.
Multivariate Behav Res ; 55(6): 855-872, 2020.
Article in English | MEDLINE | ID: mdl-31825255

ABSTRACT

For the assessment of model fit in linear structural equation modeling (SEM), several fit measures have been developed that use an unconstrained mean and covariance structure, but cannot be readily applied to SEM with quadratic and interaction effects. In this article, we propose the novel quasi-likelihood ratio test (Q-LRT) to evaluate global fit of nonlinear SEM models. The Q-LRT is based on a simplification of the quasi-maximum likelihood method for the estimation of model parameters. An empirical application of the Q-LRT is demonstrated for data in a study about aging in men. Results from a Monte Carlo study show that the Q-LRT performs reliably when sample size is sufficiently large. Also, simulations suggest robustness of Q-LRT for moderately skewed latent exogenous variables.


Subject(s)
Computer Simulation/statistics & numerical data , Latent Class Analysis , Likelihood Functions , Algorithms , Data Interpretation, Statistical , Humans , Male , Middle Aged , Monte Carlo Method , Sample Size
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