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2.
Am J Hum Genet ; 102(5): 995-1007, 2018 05 03.
Article in English | MEDLINE | ID: mdl-29656858

ABSTRACT

Developmental and epileptic encephalopathies (DEEs) represent a large clinical and genetic heterogeneous group of neurodevelopmental diseases. The identification of pathogenic genetic variants in DEEs remains crucial for deciphering this complex group and for accurately caring for affected individuals (clinical diagnosis, genetic counseling, impacting medical, precision therapy, clinical trials, etc.). Whole-exome sequencing and intensive data sharing identified a recurrent de novo PACS2 heterozygous missense variant in 14 unrelated individuals. Their phenotype was characterized by epilepsy, global developmental delay with or without autism, common cerebellar dysgenesis, and facial dysmorphism. Mixed focal and generalized epilepsy occurred in the neonatal period, controlled with difficulty in the first year, but many improved in early childhood. PACS2 is an important PACS1 paralog and encodes a multifunctional sorting protein involved in nuclear gene expression and pathway traffic regulation. Both proteins harbor cargo(furin)-binding regions (FBRs) that bind cargo proteins, sorting adaptors, and cellular kinase. Compared to the defined PACS1 recurrent variant series, individuals with PACS2 variant have more consistently neonatal/early-infantile-onset epilepsy that can be challenging to control. Cerebellar abnormalities may be similar but PACS2 individuals exhibit a pattern of clear dysgenesis ranging from mild to severe. Functional studies demonstrated that the PACS2 recurrent variant reduces the ability of the predicted autoregulatory domain to modulate the interaction between the PACS2 FBR and client proteins, which may disturb cellular function. These findings support the causality of this recurrent de novo PACS2 heterozygous missense in DEEs with facial dysmorphim and cerebellar dysgenesis.


Subject(s)
Cerebellar Diseases/genetics , Epilepsy, Generalized/genetics , Facies , Mutation, Missense/genetics , Vesicular Transport Proteins/genetics , Age of Onset , Child, Preschool , Female , Heterozygote , Humans , Infant , Infant, Newborn , Male , Phenotype
3.
Clin Microbiol Infect ; 16(5): 470-2, 2010 May.
Article in English | MEDLINE | ID: mdl-19548924

ABSTRACT

Bacterial vaginosis is a polymicrobial syndrome. The most important marker for bacterial vaginosis is the presence of Gardnerella vaginalis and Atopobium vaginae. In this study, the in vitro susceptibilities to metronidazole and secnidazole of 16 strains of A. vaginae were tested with the agar dilution method. We observed an MIC range for metronidazole of 4-64 mg/L (MIC(50), 8 mg/L; MIC(90), 32 mg/L) and an MIC range for secnidazole of 4-128 mg/L (MIC(50), 16 mg/L; MIC(90), 64 mg/L). According to these findings, we can conclude that the activity of secnidazole is similar to that of metronidazole.


Subject(s)
Actinobacteria/drug effects , Antiprotozoal Agents/pharmacology , Metronidazole/analogs & derivatives , Vaginosis, Bacterial/microbiology , Actinobacteria/isolation & purification , Female , Humans , Metronidazole/pharmacology , Microbial Sensitivity Tests
4.
Pharmacogenomics ; 3(4): 507-25, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12164774

ABSTRACT

The inference of genetic interactions from measured expression data is one of the most challenging tasks of modern functional genomics. When successful, the learned network of regulatory interactions yields a wealth of useful information. An inferred genetic network contains information about the pathway to which a gene belongs and which genes it interacts with. Furthermore, it explains the function of the gene in terms of how it influences other genes and indicates which genes are pathway initiators and therefore potential drug targets. Obviously, such wealth comes at a price and that of genetic network modeling is that it is an extremely complex task. Therefore, it is necessary to develop sophisticated computational tools that are able to extract relevant information from a limited set of microarray measurements and integrate this with different information sources, to come up with reliable hypotheses of a genetic regulatory network. Thus far, a multitude of modeling approaches have been proposed for discovering genetic networks. However, it is unclear what the advantages and disadvantages of each of the different approaches are and how their results can be compared. In this review, genetic network models are put in a historical perspective that explains why certain models were introduced. Various modeling assumptions and their consequences are also highlighted. In addition, an overview of the principal differences and similarities between the approaches is given by considering the qualitative properties of the chosen models and their learning strategies.


Subject(s)
Gene Expression Regulation/genetics , Genetic Research , Models, Genetic , Genetic Research/history , History, 20th Century , History, 21st Century , Humans , Neural Networks, Computer
5.
J Fam Pract ; 49(11): 1025-9, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11093569

ABSTRACT

BACKGROUND: Smoking is the leading cause of morbidity and mortality in the United States. Recommendations for increasing physician effectiveness in smoking cessation through the use of office-based activities have been disseminated, but the extent of implementation is unknown. We describe the degree to which selected family practices in Nebraska have implemented 15 specific office-based activities. METHODS: We employed a cross-sectional integrated multimethod design. A research nurse observed a target physician and his or her staff during a 1-day visit in a random sample of 89 family practices. Data collection consisted of focused observation of the practice environment, key informant interviews, medical record reviews, and in-depth interviews with the physicians. RESULTS: The majority of the practices sampled had an office environment that restricted smoking, but few used visual cessation messages or information in the waiting room offering help and encouraging patients to quit. Most had educational materials that were supplied by pharmaceutical companies for promoting nicotine replacement systems. These materials were easily accessible in more than half of the practices. Smoking cessation activities were initiated and carried out by physicians with minimal use of their staff. Smoking status was documented in 51% of the medical records reviewed but seldom in a place readily accessible to the physician. All physicians were very aware of the importance of smoking cessation counseling, and most felt confident in their skills. CONCLUSIONS: Despite identification of patient smoking as a problem, most practices were not using office-based activities to enhance and support physician counseling. New perspectives for helping practices with this task need to be explored.


Subject(s)
Family Practice , Smoking Cessation , Cross-Sectional Studies , Health Promotion/methods , Humans , Nebraska , Patient Education as Topic , Physicians' Offices , Research Design
6.
J Fam Pract ; 49(9): 811-6, 2000 Sep.
Article in English | MEDLINE | ID: mdl-11032205

ABSTRACT

BACKGROUND: Interactions between the pharmaceutical industry and physicians have been discussed in numerous publications; however, most articles are limited to surveys and self-report data and often focus on academic or training contexts. We describe the role of pharmaceutical representatives and the use of samples in community-based family practices, using data obtained by directly observing clinical encounters. METHODS: We collected detailed descriptive field notes of the direct observations of 53 primary care clinicians and 1588 patient encounters in 18 purposefully selected Nebraska family practices. We used a comparative case study design, that used depth interviews of clinicians and office staff, and included details of the interactions with pharmaceutical representatives and the use of samples in clinical encounters. RESULTS: Individual providers and practices displayed noticeable variation in their approaches to drug representatives and samples. We found formal strategies and policies in a minority of practices. Generally there was little structure in the organization and distribution of sample medications at the office level, and detailed patient education regarding these drugs was rarely observed in patient encounters. Nevertheless, samples were used in almost 20% of observed encounters, at times as starter dosages, but often as complete courses of treatment. The benefits derived from contact with the pharmaceutical industry varied substantially, but most often included free medication samples, meals, and patient education materials. CONCLUSIONS: Clinicians have a complex symbiosis with the pharmaceutical industry and need to critically evaluate their handling of samples and their contact with pharmaceutical representatives to optimize this relationship and ensure quality patient care. Clinics with specific policies for interactions with drug companies appear to derive more satisfaction from their encounters.


Subject(s)
Drug Industry , Family Practice , Interprofessional Relations , Marketing of Health Services , Pharmaceutical Preparations , Drug Industry/economics , Drug Storage , Family Practice/organization & administration , Humans , Marketing of Health Services/methods , Nebraska , Observation , Office Visits , Patient Education as Topic/methods , Practice Management, Medical
7.
Br J Ophthalmol ; 84(7): 682-6, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10873973

ABSTRACT

AIMS: To examine a large family with an autosomal dominant fundus dystrophy and to investigate whether or not mutations in TIMP-3 gene were involved. METHODS: A large family of 58 individuals with an autosomal dominant fundus dystrophy was examined ophthalmologically. A DNA linkage analysis in the 22q12.1-q13.2 region was performed. The TIMP-3 gene was screened for mutations in all five exons. RESULTS: In this large family 15 individuals were affected. All other individuals were found to be clinically unaffected. Pisciform flecks in the midperiphery and drusen-like deposits were the most typical ophthalmological finding in this family and were encountered from the fifth decade on. Chorioretinal atrophy and neovascularisation with disciform lesions characterised the disease from the sixth decade on. Linkage analysis using an affected only analysis, showed a maximum positive lod score of 3.94 at theta = 0.0 with marker D22S283. No mutations possibly causing Sorsby fundus dystrophy were found in either the exonic sequences, the promotor region, or the 3'UTR. CONCLUSION: The family in this pedigree has an autosomal dominant fundus dystrophy, which is most probably Sorsby fundus dystrophy. Although, in the linkage analysis, significant positive lod scores were found with the region 22q12.1-q13.2, no causative mutations could be identified in the TIMP-3 gene.


Subject(s)
Macular Degeneration/genetics , Mutation/genetics , Tissue Inhibitor of Metalloproteinase-3/genetics , Aged , Aged, 80 and over , Atrophy/etiology , Chromosome Mapping , Chromosomes, Human, Pair 22/genetics , DNA/analysis , Exons , Female , Genes, Dominant , Humans , Macular Degeneration/complications , Male , Middle Aged , Pedigree , Polymerase Chain Reaction/methods , Promoter Regions, Genetic , Retinal Drusen/etiology , Retinal Neovascularization/etiology
8.
Graefes Arch Clin Exp Ophthalmol ; 238(2): 158-62, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10766286

ABSTRACT

PURPOSE: To report the indocyanine green angiographic findings in patients with a fundus dystrophy characterized by subretinal deposits, macular atrophic or neovascular degeneration and peripheral chorioretinal atrophy which is most likely Sorsby's fundus dystrophy. METHODS: A series of 11 clinically affected patients and 4 asymptomatic carriers, belonging to one autosomal dominant pedigree were examined with stereoscopic funduscopy, fluorescein and indocyanine green angiography. RESULTS: Subretinal deposits were found in 20 eyes of 10 patients. These deposits stained slightly on indocyanine green angiography, causing a reticular pattern. Two eyes had a disciform lesion and 3 geographic atrophy in the macula. A peripheral disciform lesion was found in 1 eye. Indocyanine green angiography identified peripapillary choroidal neovascularization in 2 eyes. Peripheral chorioretinal atrophy was found in 8 eyes of 4 patients, associated with peripheral plaques that could only be identified by indocyanine green angiography in 6 eyes of 3 patients. CONCLUSION: Indocyanine green angiography in Sorsby's fundus dystrophy may indicate the presence of homogeneously staining, well-demarcated peripheral areas of hyperfluorescence associated with chorioretinal atrophy. These plaques correspond in our opinion to choroidal neovascularization which is otherwise unsuspected.


Subject(s)
Choroidal Neovascularization/diagnosis , Fluorescein Angiography , Fluorescent Dyes , Fundus Oculi , Indocyanine Green , Retinal Degeneration/diagnosis , Retinal Hemorrhage/diagnosis , Adult , Aged , Aged, 80 and over , Choroidal Neovascularization/genetics , Diagnosis, Differential , Female , Humans , Male , Middle Aged , Retinal Degeneration/genetics , Retinal Hemorrhage/genetics , Visual Acuity
10.
J Fam Pract ; 44(2): 193-202, 1997 Feb.
Article in English | MEDLINE | ID: mdl-9040523

ABSTRACT

BACKGROUND: Despite years of intervention, few studies describe the extent to which recommended tobacco use prevention and cessation activities occur in community-based family practices. This study was designed to discover current practice patterns in these areas and to describe physician outcome and efficacy expectations. METHODS: An exploratory comparative case study of 11 family practices used direct observation of practices and clinical encounters, chart reviews, and in-depth interviews. Qualitative and quantitative information was gathered on (1) intensity of tobacco use prevention and cessation; (2) physicians' attitudes and beliefs regarding outcome expectations; and (3) physicians' perceptions of their ability to counsel. Qualitative content analysis and descriptive statistics were used to construct case studies for comparisons. RESULTS: Themes common to most practices included the "provision of little prevention" and "a lack of perceived need to address smokeless tobacco." Responsibility for tobacco activities fell almost solely to physicians. Although physicians felt confident in their counseling skills, the skills they identified were fairly basic. Most physicians were pessimistic about the positive effects of these activities. None of the practices was using any specifically developed "package," and pharmaceutical companies provided almost all patient education material. There was considerable variation in intensity of activities because of differences in attitudes, expectation, and background. CONCLUSIONS: To increase tobacco control activities, practice systems need to be individually evaluated to identify what is needed, how it will fit within the practice culture, and how it can best be implemented in this specific practice. One-size-fits-all interventions probably will not be widely implemented.


Subject(s)
Family Practice , Practice Patterns, Physicians' , Smoking Cessation , Smoking Prevention , Adolescent , Attitude of Health Personnel , Counseling , Family Practice/trends , Humans , Nebraska , Patient Education as Topic/methods , Physicians, Family/psychology , Practice Patterns, Physicians'/trends , Primary Prevention
11.
Ann Clin Biochem ; 33 ( Pt 2): 132-8, 1996 Mar.
Article in English | MEDLINE | ID: mdl-8729721

ABSTRACT

To detect Bence-Jones protein (BJP) in serum we precipitated intact immunoglobulins (Ig) using polyethylene glycol (PEG) and subjected the BJP in solution to electrophoresis in agarose gel, followed by transfer to a polyvinylidene difluoride membrane, and immunoenzymatic staining (successively using rabbit anti-human light/heavy chain of Ig, biotinylated swine anti-rabbit Ig, and alkaline phosphatase-conjugated streptavidin). Treatment with PEG effectively reduced background staining of polyclonal Ig in the immunoblots, although intact monoclonal Ig was not always completely removed. To compare the present method with immunoelectrophoresis (IEP), we selected samples from patients demonstrating BJP by IEP in both serum and urine (n = 40), serum only (n = 18), and urine only (n = 32); 21 of these patients had BJP alone and 69 had BJP in addition to intact monoclonal Ig. Efficiency of detection of BJP in serum was increased by the present method: serum BJP was detected in 70 patients by the present method versus 58 by IEP. The present method demonstrated single BJP bands in the samples from 16 patients (kappa, n = 7; lambda, n = 9) and multiple BJP bands (range: 2-9) in the samples from 54 patients (kappa, n = 31; lambda, n = 23). This method could be useful for detecting BJP in serum from patients suspected of having light chain gammopathy (without the need for urine testing) and may complement urine testing in patients excreting polyclonal free light chains of Ig.


Subject(s)
Bence Jones Protein/analysis , Immunoblotting , Antibodies, Monoclonal , Bence Jones Protein/urine , Humans , Immunoelectrophoresis , Immunoglobulins/isolation & purification , Paraproteinemias/metabolism , Polyethylene Glycols , Reproducibility of Results , Sensitivity and Specificity
12.
Bull Soc Belge Ophtalmol ; 257: 53-8, 1995.
Article in English | MEDLINE | ID: mdl-8696524

ABSTRACT

The authors present a case of a newborn with bilateral dacryocystocele in whom repeated probing was unsuccessful. An associated intranasal cyst was diagnosed. Using fiberoptic nasal endoscopy, treatment consisted of probing, irrigation and marsupialization of the cyst. This rarely reported anomaly is a more common finding in dacryocystocele than previously recognized. Careful nasal examination in all infants with congenital dacryocystocele is recommended.


Subject(s)
Cysts/diagnostic imaging , Dacryocystitis/etiology , Lacrimal Duct Obstruction/etiology , Nose Diseases/diagnostic imaging , Cysts/congenital , Cysts/surgery , Dacryocystorhinostomy , Female , Humans , Infant, Newborn , Mucocele/surgery , Nose Diseases/congenital , Nose Diseases/surgery , Tomography, X-Ray Computed
14.
Neth J Med ; 41(3-4): 161-70, 1992 Oct.
Article in English | MEDLINE | ID: mdl-1470288

ABSTRACT

This report describes a patient with a recurring, one stemline-aneuploid, adrenocortical carcinoma. The condition showed a number of unusual characteristics over a period of 22 yr. It changed from a biochemically functioning, low-grade malignant tumour into a non-functioning malignancy with pronounced mitotic activity, accompanied by an ovarian carcinosarcoma 1 yr before death. Quality of life was reasonable for many years despite chemotherapy, consisting of a total of almost 10 kg of o,p'-DDD administered over a period of 8 yr, and the subsequent side effects (e.g. low T4; increased bleeding time). A reduced mineralocorticoid activity, induced by o,p'-DDD, was reversed after discontinuation of o,p'-DDD treatment. During o,p'-DDD administration the substitution requirements for both hydrocortisone and fludrocortisone acetate increased, leading to periods of hypoadrenocorticism with prerenal uraemia.


Subject(s)
Adrenal Gland Neoplasms/therapy , Carcinoma/therapy , Mitotane/therapeutic use , Neoplasm Recurrence, Local/therapy , Adrenal Gland Neoplasms/pathology , Carcinoma/pathology , Carcinoma/secondary , Carcinosarcoma/pathology , Combined Modality Therapy , Female , Humans , Lung Neoplasms/secondary , Lung Neoplasms/therapy , Middle Aged , Neoplasm Recurrence, Local/pathology , Neoplasms, Second Primary , Ovarian Neoplasms/pathology , Time Factors
17.
Clin Chem ; 37(2): 173-9, 1991 Feb.
Article in English | MEDLINE | ID: mdl-1993321

ABSTRACT

We have developed a method for identifying IgG-complexed creatine kinase (CK; EC 2.7.3.2) (IgG-CK) and IgA-complexed CK (IgA-CK) in serum. We used immobilized Protein G to bind IgG-CK and immobilized jacalin to bind IgA-CK, leaving noncomplexed CK in solution. The noncomplexed CK and total CK were measured kinetically. The results are reported as CK bound to immobilized Protein G and CK bound to immobilized jacalin. We validated the method by using sera determined immunochemically to contain IgG-CK, IgA-CK, mitochondrial CK (CKmt), and free CK-BB. We demonstrated concomitant binding of CK and approximately 99% of IgG, and of CK and approximately 87% of IgA. For CK bound to immobilized Protein G and to immobilized jacalin, intra- and interassay precisions ranged from 2.5% to 9.6%, and detection limits were less than 9 318 U/L in 40 sera containing IgG-CK, and CK bound to immobilized jacalin ranged from 10 to 59 U/L in eight sera containing IgA-CK. These ranges represent the activities of immunoglobulin-bound CK in the sera. In 13 sera containing CKmt and in eight sera containing free CK-BB, the binding of CK was less than 9 U/L. Evidently, this method is useful for identifying IgG-CK and IgA-CK in serum.


Subject(s)
Creatine Kinase/blood , Immunoglobulin A/metabolism , Immunoglobulin G/metabolism , Isoenzymes/blood , Plant Lectins , Creatine Kinase/metabolism , Humans , Interferon Inducers/metabolism , Isoenzymes/metabolism , Lectins/metabolism , Nerve Tissue Proteins/metabolism , Precipitin Tests
18.
Clin Chim Acta ; 193(3): 157-63, 1990 Dec 14.
Article in English | MEDLINE | ID: mdl-2126488

ABSTRACT

Variant electrophoretic patterns of lactate dehydrogenase isoenzymes were studied. By radial immunodiffusion and immunoelectrophoresis, immunoglobulin and light chain class of autoantibodies to lactate dehydrogenase were identified in nine sera: seven of these sera demonstrated IgG (5 lambda, 2 kappa) autoantibodies to lactate dehydrogenase, the other two demonstrated IgA (both kappa) autoantibodies to lactate dehydrogenase, the other two demonstrated IgA (both kappa) autoantibodies to lactate dehydrogenase. We conclude that radial immunodiffusion and immunoelectrophoresis are equally effective for identifying auto-antibodies to lactate dehydrogenase in serum. Radial immunodiffusion, however, is easier to perform than immunoelectrophoresis.


Subject(s)
Autoantibodies/blood , L-Lactate Dehydrogenase/immunology , Humans , Immunodiffusion/methods , Immunoelectrophoresis/methods
19.
Ned Tijdschr Geneeskd ; 134(35): 1705-7, 1990 Sep 01.
Article in Dutch | MEDLINE | ID: mdl-1699137

ABSTRACT

A man aged 68 years with choledocholithiasis and cholangitis, with no clinical signs suggestive of acute pancreatitis and with a low excretion of amylase in the urine, showed persistent hyperamylasaemia which appeared to be caused by macroamylasaemia. The macroamylase (an IgA-lambda-amylase complex) accounted for nearly all (90%) of the amylase activity in the serum. The activity of pancreatic amylase in serum, determined by an immunoinhibition test which selectively blocks salivary amylase activity, constituted 99% of the amylase activity in serum (normal reference range 19-71). We showed, however, that complexed salivary amylase is not inhibited in the test, resulting in a falsely-increased activity of pancreatic amylase in serum. We conclude that macroamylasaemia can lead to a clinically misleading increase in the activity of pancreatic amylase in serum.


Subject(s)
Amylases/blood , Aged , Amylases/urine , Cholangitis/enzymology , Cholelithiasis/enzymology , Diagnosis, Differential , False Positive Reactions , Humans , Macromolecular Substances , Male , Pancreatitis/diagnosis , Pancreatitis/enzymology
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