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1.
Nat Struct Biol ; 7(11): 1013-7, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11062554

ABSTRACT

Correct positioning of the division septum in Escherichia coli depends on the coordinated action of the MinC, MinD and MinE proteins. Topological specificity is conferred on the MinCD division inhibitor by MinE, which counters MinCD activity only in the vicinity of the preferred midcell division site. Here we report the structure of the homodimeric topological specificity domain of Escherichia coli MinE and show that it forms a novel alphabeta sandwich. Structure-directed mutagenesis of conserved surface residues has enabled us to identify a spatially restricted site on the surface of the protein that is critical for the topological specificity function of MinE.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/chemistry , Amino Acid Sequence , Bacterial Proteins/genetics , Cell Cycle Proteins , Conserved Sequence , Dimerization , Models, Biological , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Nuclear Magnetic Resonance, Biomolecular , Protein Structure, Secondary , Protein Structure, Tertiary , Sequence Alignment , Structure-Activity Relationship , Substrate Specificity
2.
J Biol Chem ; 275(48): 37454-61, 2000 Dec 01.
Article in English | MEDLINE | ID: mdl-10978321

ABSTRACT

The transcription factor Max is the obligate dimerization partner of the Myc oncoprotein. The pivotal role of Max within the Myc regulatory network is dependent upon its ability to dimerize via the helix-loop-helix leucine zipper domain. The Max homodimer contains a tetrad of polar residues at the interface of the leucine zipper domain. A conserved interfacial Asn residue at an equivalent position in two other leucine zipper proteins has been shown to decrease homodimer stability. The unusual arrangement of this Gln-Asn/Gln'-Asn' tetrad prompted us to investigate whether Asn(92) plays a similar role in destabilizing the Max homodimer. This residue was sequentially replaced with aliphatic and charged residues. Thermal denaturation, redox time course and analytical ultracentrifugation studies show that the N92V mutation does not increase homodimer stability. Replacing this residue with negatively charged side chains in N92D and N92E destabilizes the mutant homodimer. Further replacement of Gln(91) indicated that H bonding between Gln(91) and Asn(92) residues is not significant to the stability of the native protein. These data collectively demonstrate the central role of Asn(92) in homodimer interactions. Molecular modelling studies illustrate the favorable packing of the native Asn residue at the dimer interface compared with that of the mutant Max peptides.


Subject(s)
Amides/chemistry , Asparagine/chemistry , Helix-Loop-Helix Motifs , Leucine Zippers , Base Sequence , Circular Dichroism , DNA Primers , Dimerization , Leucine Zippers/genetics , Models, Molecular , Mutagenesis , Oxidation-Reduction , Protein Denaturation
3.
Biochemistry ; 35(28): 9069-75, 1996 Jul 16.
Article in English | MEDLINE | ID: mdl-8703910

ABSTRACT

c-Jun and c-Fos belong to the bZIP class of transcriptional activator proteins, many of which have been implicated in the neoplastic transformation of cells. We are interested in engineering dominant-negative leucine zipper (LZ) peptides as a means of sequestering these proteins in vivo in order to suppress their transcriptional regulatory activity. Toward this end, we have developed a novel immunoassay for measuring the dimerization affinities of dimeric Jun and Fos complexes. This peptide-based ELISA relies on the fact that Jun and Fos preferentially form heterodimers via their leucine zipper domains. Recombinant Jun leucine zipper peptides (either native JunLZ or a V36 --> E point mutant) were labeled with biotin and specifically bound through a leucine zipper interaction to a FosLZ-glutathione S-transferase fusion protein adsorbed onto the wells of an ELISA tray. Jun:Fos complexes were subsequently detected using a recently developed streptavidin-based amplification system known as enzyme complex amplification [Wilson, M. R., & Easterbrook-Smith, S.B. (1993) Anal. Biochem. 209, 183-187]. This ELISA system can detect subnanomolar concentrations of Jun and Fos, thus allowing determination of the dissociation constants for complex formation. The dissociation constant for formation of the native JunLZ:FosLZ heterodimer at 37 degrees C was determined to be 0.99 +/- 0.30 nM, while that for JunLZ(V36E):FosLZ heterodimer was 0.90 +/- 0.13 microM. These results demonstrate that the novel peptide-based ELISA described herein is simple and sensitive and can be used to rapidly screen for potential dominant-negative leucine zipper peptides.


Subject(s)
Enzyme-Linked Immunosorbent Assay/methods , Oncogene Protein p65(gag-jun)/analysis , Oncogene Proteins v-fos/analysis , Peptides/immunology , Amino Acid Sequence , Biotin , Electrophoresis, Polyacrylamide Gel , Escherichia coli/genetics , Glutathione Transferase , Leucine Zippers , Molecular Sequence Data , Oncogene Protein p65(gag-jun)/chemistry , Oncogene Protein p65(gag-jun)/metabolism , Oncogene Proteins v-fos/chemistry , Oncogene Proteins v-fos/metabolism , Peptides/metabolism , Protein Conformation , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sensitivity and Specificity
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