Explorational analysis of the abundance and prevalence of chigger and gamasid mites parasitic on small mammals in Vietnam.

We studied chigger and gamasid mite loads on small mammals during the dry season in Vietnam and used both our field data and museum collections to estimate the influence of environmental factors on mite abundance and prevalence. Generalized linear (mixed effect) models were used to analyze the data. We examined 1,239 small mammal individuals, which were obtained from field expeditions and museum collections belonging to 59 species. In different localities, Rattus Fischer (Rodentia: Muridae), Niviventer Marshall (Rodentia: Muridae), and Maxomys Sody (Rodentia: Muridae) were the most common animals captured. The prevalence of chigger and gamasid mites in our expedition data was high: 72% and 62%, respectively. We found differences in the abundance of chigger mites between different populations of the same species of small mammals. Season and locality were the main factors that influenced chigger mite abundance and prevalence. The best model that predicted the abundance and prevalence of chigger mites included geography (province) as a predictor and host species and season as random effects. For the first time, we analyzed factors connected with climate and weather affecting chigger mites of small mammals in Vietnam.

New data on the distribution and diversity of the Tonkin limestone rat (Tonkinomysdaovantieni, Rodentia, Muridae).

The paper presented novel findings of little-known species of rodents the Tonkin limestone rat Tonkinomysdaovantieni in Cao Bang Province, Vietnam with its morphological and genetic characterisation. The study summarises data on the distribution of this data-deficient species, available museum collections, genetic samples, information on its taxonomy and ecology, important to establish the proper conservation status of the species. An exhaustive map of the findings is provided. It is shown that, based on the data currently available, the species does not require taxonomic revision and also, apparently, does not need a special conservation measure; its status may be established to date as Near Threatened B1a+2a and the current population trend - Stable, IUCN.

New occurrence records on the rodent species inhabiting Vietnam, based on Joint Russian-Vietnamese Tropical Research and Test Center genetic samples collection.

Background: Open access to occurrence records in a standardised format has strong potential applications for many kinds of ecological research and bioresources management, including the assessment of invasion risks, formulation of nature protection, biomedical and management plans in the context of global climate and land-use changes both in the short and long perspective. The accumulation and aggregation of data on the occurrence records of small mammals are relevant for the study of biogeography and for ecological surveys including construction of the spatial distribution and ecological niche modelling of species ' distributions in the context of global climate change. The author has created a dataset of 2408 rodents and tree shrews occurrence records from Vietnam, collected from November 2007 to May 2022. A number of zoologist colleagues also provided genetic samples. A considerable part of these data has been published previously in a number of papers; however, most of these data have yet to be presented. These records cover a significant part of the range of many rodent species in Southeast Asia and provide new data on their distribution. The data were obtained during a number of different field expeditions, where some animals were caught by the author and some were provided by other researchers, resulting in different accuracy levels of geographic coordinates and altitude estimates may range from 10 to 1000 metres in area and from 1 to 100 metres for elevation. A number of samples were genetically examined to avoid inconsistencies with the taxonomic identification. With the help of colleagues, the author created a set of georeferenced occurrence records, adapted to the controlled vocabulary of Darwin Core format datasets, removed duplicates and standardised the format of records using commonly-used unified data structure. This paper presents the resulting dataset of rodents (mostly of Muridae and Sciuridae) along with other small terrestrial species (Scandentia Tupaidae) occurrence records in the territory of Vietnam and Laos. New information: Much of the distribution data are currently available as open source GBIF databases and potentially may be combined into a united framework for better data resolution. The dataset presented here combines occurrence records of many species over a significant part of their recent natural range, in Vietnam and Laos. The author presents a validated and comprehensive dataset of rodents' occurrence records, based on genetic samples collection compiled during 15 years working in Vietnam (from 2007 to date). Prior to this project, a considerable part of the information about Vietnamese rodents was not available to a wide range of researchers to use these spatial data for analyses by modern methods, for example, for analysis based on geographic information systems (GIS technologies). This dataset now is available for any researchers who use the data format prepared in accordance with Darwin Core standards.For different countries of Southeast Asia and beyond, there are a lot of additional occurrence records for a number of species listed here which may be combined, but a considerable part of them is still scattered over a number of separate literary sources, while another is still presented as maps, field notes and huge amount of museum zoological collections records. The final set was created by a combination of species occurrence records and uniform data structure with verification of the samples' geographic coordinates. Most samples were genetically or/and morphologically verified for correct taxonomical identification, because the most part of the samples presented was carefully investigated by the author himself, both for morphology and genetic attribution. Therefore, the dataset expands the available information on the spatial and temporal distribution of a number of small mammals' species in Southeast Asia. All original notes and geographical localities were carefully checked and any duplicate and erroneous records have been removed from the final dataset.To the date of publication of these data, the GBIF database https://www.gbif.org contained 1408 rodent occurrence records from Vietnam (Fig. 1) along with 240 Scandentia records (Fig. 2), primarily the data on museum materials, including four large collections, such as the Field Museum of Natural History (Zoology) Mammal Collection (646 samples), Australian National Wildlife Collection provider for OZCAM (537), MVZ Mammal Collection Arctos (109), Museum of Comparative Zoology, Harvard University (69) and six other minor collections comprising single specimens.Actually, as for the small terrestrial mammals, Vietnam remains one of the least representative regions in Southeast Asia. Here, we present new data containing 2408 occurrence records, including 2237 rodent records, along with 171 Scandentia ones (Fig. 3). Thus, the data significantly expand our knowledge about actual ranges of a number of species, including rare and endangered ones.

Investigation of multiple infections with zoonotic pathogens of rodents in northern Vietnam.

BACKGROUND & OBJECTIVES: Rodents are important reservoir hosts for several zoonotic pathogens such as Rickettsia, Leptospira and Bartonella. Studies on the prevalence of zoonotic pathogens in Vietnam are data deficient, and there is a scarcity of data on multiple co-infections of zoonotic pathogens to date. This study examined the prevalence of Rickettsia spp., Leptospira spp., and Bartonella spp. and the co-infection of these pathogens in rodents captured in three provinces of northern Vietnam - Ha Giang, Lao Cai and Cao Bang. METHODS: In total, 133 rodents of 25 species were screened for pathogen prevalence by real-time PCR. RESULTS: Very high infection rates were found for each pathogen, with 42 of 133 rodents (31.6%) positive for Bartonella and 33 of 133 (24.8%) positive for Rickettsia (5.3% were positive for Rickettsia typhi, and 19.5% were infected with Rickettsia spotted fever group). Additionally, 24 rodents (18%) were positive for Leptospira. Double infection among these three pathogens was found in 26 of 133 rodents (18.8%), with the highest dual infection rates for Rickettsia and Bartonella co-infection (40%) and Leptospira and Bartonella co-infection (up to 40%), followed by Rickettsia and Leptospira co-infection (20% of animals investigated). One case of triple infection was documented for a house rat (Rattus cf. rattus species group) trapped in Ha Giang province. INTERPRETATION & CONCLUSION: Our survey indicates that rodents in northern Vietnam may host multiple zoonotic pathogens simultaneously; thus, rodents contribute significantly to the increased risk of transmission of multiple zoonotic infections from animals to humans.

Phylogenetic relationships in the Niviventer-Chiromyscus complex (Rodentia, Muridae) inferred from molecular data, with description of a new species.

Based on molecular data for mitochondrial (Cyt b, COI) and nuclear (IRBP, GHR) genes, and morphological examinations of museum specimens, we examined diversity, species boundaries, and relationships within and between the murine genera Chiromyscus and Niviventer. Phylogenetic patterns recovered demonstrate that Niviventer sensu lato is not monophyletic but instead includes Chiromyscuschiropus, the only previously recognized species of Chiropus. To maintain the genera Niviventer and Chiropus as monophyletic lineages, the scope and definition of the genus Chiromyscus is revised to include at least three distinct species: Chiromyscuschiropus (the type species of Chiromyscus), Chiromyscuslangbianis (previously regarded as a species of Niviventer), and a new species, described in this paper under the name Chiromyscusthomasi sp. n.

The taxonomic position of Tonkinomys daovantieni (Rodentia: Muridae) based on karyological and molecular data.

Tonkinomys daovantieni was recently described from Northern Vietnam, but very sparse information exists for the taxon. We report for the first time the karyotype of this species and investigate its phylogenetic position in the Dacnomys division using both mitochondrial and nuclear genetic data. The diploid chromosome number of the species is 2n=44. This chromosomal set consists of one submetacentric pair, one metacentric pair, and nineteen pairs of subtelocentric/acrocentric autosomes progressively decreasing in size. The X chromosome is submetacentric and approximately equal in size to the largest subtelocentric autosome. The Y chromosome is metacentric and equal in size to the smallest pair of autosomes. The phylogenetic reconstruction based on the Cyt b COI and GHR genes reveals that Saxotilomys paulinae, a species distributed in the karst formations of the Lao PDR, is the closest relative to T. daovantieni. These two taxa are similar not only in a number of morphological characters, but also in their major ecological preferences (both are petrophylic species associated with limestone karst formations). Based on our data, we can conclude that the similarities among the ecological adaptations, natural conditions and habitat preferences of these species are a reflection of their phylogenetic relationship.