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1.
Comput Struct Biotechnol J ; 23: 157-164, 2024 Dec.
Article in English | MEDLINE | ID: mdl-38144945

ABSTRACT

In the field of metastatic skeletal oncology imaging, the role of artificial intelligence (AI) is becoming more prominent. Bone metastasis typically indicates the terminal stage of various malignant neoplasms. Once identified, it necessitates a comprehensive revision of the initial treatment regime, and palliative care is often the only resort. Given the gravity of the condition, the diagnosis of bone metastasis should be approached with utmost caution. AI techniques are being evaluated for their efficacy in a range of tasks within medical imaging, including object detection, disease classification, region segmentation, and prognosis prediction in medical imaging. These methods offer a standardized solution to the frequently subjective challenge of image interpretation.This subjectivity is most desirable in bone metastasis imaging. This review describes the basic imaging modalities of bone metastasis imaging, along with the recent developments and current applications of AI in the respective imaging studies. These concrete examples emphasize the importance of using computer-aided systems in the clinical setting. The review culminates with an examination of the current limitations and prospects of AI in the realm of bone metastasis imaging. To establish the credibility of AI in this domain, further research efforts are required to enhance the reproducibility and attain robust level of empirical support.

2.
Methods ; 204: 172-178, 2022 08.
Article in English | MEDLINE | ID: mdl-35413441

ABSTRACT

In medical and material science, 3D reconstruction is of great importance for quantitative analysis of microstructures. After the image segmentation process of serial slices, in order to reconstruct each local structure in volume data, it needs to use precise object tracking algorithm to recognize the same object region in adjacent slice. Suffering from weak representative hand-crafted features, traditional object tracking methods always draw out under-segmentation results. In this work, we have proposed an adjacent similarity based deep learning tracking method (ASDLTrack) to reconstruct 3D microstructure. By transferring object tracking problem to classification problem, it can utilize powerful representative ability of convolutional neural network in pattern recognition. Experiments in three datasets with three metrics demonstrate that our algorithm achieves the promising performance compared to traditional methods.


Subject(s)
Deep Learning , Algorithms , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Neural Networks, Computer
3.
J Microsc ; 281(3): 177-189, 2021 03.
Article in English | MEDLINE | ID: mdl-32901937

ABSTRACT

The microscopic image is important data for recording the microstructure information of materials. Researchers usually use image-processing algorithms to extract material features from that and then characterise the material microstructure. However, the microscopic images obtained by a microscope often have random damaged regions, which will cause the loss of information and thus inevitably influence the accuracy of microstructural characterisation, even lead to a wrong result. To handle this problem, we provide a deep learning-based fully automatic method for detecting and inpainting damaged regions in material microscopic images, which can automatically inpaint damaged regions with different positions and shapes, as well as we also use a data augmentation method to improve the performance of inpainting model. We evaluate our method on Al-La alloy microscopic images, which indicates that our method can achieve promising performance on inpainted and material microstructure characterisation results compared to other image inpainting software for both accuracy and time consumption. LAY DESCRIPTION: A basic goal of materials data analysis is to extract useful information from materials datasets that can in turn be used to establish connections along the composition-processing-structure-properties chain. The microscopic images obtained by a microscope is the key carrier of material microstructural information. Researchers usually use image analysis algorithms to extract regions of interest or useful features from microscopic images, aiming to analyse material microstructure, organ tissues or device quality etc. Therefore, the integrity and clarity of the microscopic image are the most important attributes for image feature extraction. Scientists and engineers have been trying to develop various technologies to obtain perfect microscopic images. However, in practice, some extrinsic defects are often introduced during the preparation and/or shooting processes, and the elimination of these defects often requires mass efforts and cost, or even is impossible at present. Take the microstructure image of metallic material for example, samples prepared to microstructure characterisation often need to go through several steps such as cutting, grinding with sandpaper, polishing, etching, and cleaning. During the grinding and polishing process, defects such as scratches could be introduced. During the etching and cleaning process, some defects such as rust caused by substandard etching, stains etc. may arise and be persisted. These defects can be treated as damaged regions with nonfixed positions, different sizes, and random shapes, resulting in the loss of information, which seriously affects subsequent visual observation and microstructural feature extraction. To handle this problem, we provide a deep learning-based fully automatic method for detecting and inpainting damaged regions in material microscopic images, which can automatically inpaint damaged regions with different positions and shapes, as well as we also use a data augmentation method to improve the performance of inpainting model. We evaluate our method on Al-La alloy microscopic images, which indicates that our method can achieve promising performance on inpainted and material microstructure characterisation results compared to other image inpainting software for both accuracy and time consumption.

4.
BMC Bioinformatics ; 21(1): 399, 2020 Sep 09.
Article in English | MEDLINE | ID: mdl-32907544

ABSTRACT

BACKGROUND: Cryo-electron tomography is an important and powerful technique to explore the structure, abundance, and location of ultrastructure in a near-native state. It contains detailed information of all macromolecular complexes in a sample cell. However, due to the compact and crowded status, the missing edge effect, and low signal to noise ratio (SNR), it is extremely challenging to recover such information with existing image processing methods. Cryo-electron tomogram simulation is an effective solution to test and optimize the performance of the above image processing methods. The simulated images could be regarded as the labeled data which covers a wide range of macromolecular complexes and ultrastructure. To approximate the crowded cellular environment, it is very important to pack these heterogeneous structures as tightly as possible. Besides, simulating non-deformable and deformable components under a unified framework also need to be achieved. RESULT: In this paper, we proposed a unified framework for simulating crowded cryo-electron tomogram images including non-deformable macromolecular complexes and deformable ultrastructures. A macromolecule was approximated using multiple balls with fixed relative positions to reduce the vacuum volume. A ultrastructure, such as membrane and filament, was approximated using multiple balls with flexible relative positions so that this structure could deform under force field. In the experiment, 400 macromolecules of 20 representative types were packed into simulated cytoplasm by our framework, and numerical verification proved that our method has a smaller volume and higher compression ratio than the baseline single-ball model. We also packed filaments, membranes and macromolecules together, to obtain a simulated cryo-electron tomogram image with deformable structures. The simulated results are closer to the real Cryo-ET, making the analysis more difficult. The DOG particle picking method and the image segmentation method are tested on our simulation data, and the experimental results show that these methods still have much room for improvement. CONCLUSION: The proposed multi-ball model can achieve more crowded packaging results and contains richer elements with different properties to obtain more realistic cryo-electron tomogram simulation. This enables users to simulate cryo-electron tomogram images with non-deformable macromolecular complexes and deformable ultrastructures under a unified framework. To illustrate the advantages of our framework in improving the compression ratio, we calculated the volume of simulated macromolecular under our multi-ball method and traditional single-ball method. We also performed the packing experiment of filaments and membranes to demonstrate the simulation ability of deformable structures. Our method can be used to do a benchmark by generating large labeled cryo-ET dataset and evaluating existing image processing methods. Since the content of the simulated cryo-ET is more complex and crowded compared with previous ones, it will pose a greater challenge to existing image processing methods.


Subject(s)
Cytoplasm/ultrastructure , Electron Microscope Tomography/methods , Molecular Dynamics Simulation , Algorithms , Cluster Analysis , Cryoelectron Microscopy , Cytoplasm/metabolism , Image Processing, Computer-Assisted , Macromolecular Substances/chemistry , Macromolecular Substances/metabolism , Signal-To-Noise Ratio
5.
Comput Intell Neurosci ; 2020: 7986982, 2020.
Article in English | MEDLINE | ID: mdl-32508906

ABSTRACT

To improve the optimization quality, stability, and speed of convergence of wolf pack algorithm, an adaptive shrinking grid search chaotic wolf optimization algorithm using standard deviation updating amount (ASGS-CWOA) was proposed. First of all, a strategy of adaptive shrinking grid search (ASGS) was designed for wolf pack algorithm to enhance its searching capability through which all wolves in the pack are allowed to compete as the leader wolf in order to improve the probability of finding the global optimization. Furthermore, opposite-middle raid method (OMR) is used in the wolf pack algorithm to accelerate its convergence rate. Finally, "Standard Deviation Updating Amount" (SDUA) is adopted for the process of population regeneration, aimed at enhancing biodiversity of the population. The experimental results indicate that compared with traditional genetic algorithm (GA), particle swarm optimization (PSO), leading wolf pack algorithm (LWPS), and chaos wolf optimization algorithm (CWOA), ASGS-CWOA has a faster convergence speed, better global search accuracy, and high robustness under the same conditions.


Subject(s)
Algorithms , Computer Simulation , Computer Systems , Data Collection , Data Collection/methods , Electrodes , Probability , Reference Standards
6.
Sensors (Basel) ; 20(5)2020 Feb 26.
Article in English | MEDLINE | ID: mdl-32110906

ABSTRACT

This paper focuses on the time series prediction problem for underflow concentration of deep cone thickener. It is commonly used in the industrial sedimentation process. In this paper, we introduce a dual attention neural network method to model both spatial and temporal features of the data collected from multiple sensors in the thickener to predict underflow concentration. The concentration is the key factor for future mining process. This model includes encoder and decoder. Their function is to capture spatial and temporal importance separately from input data, and output more accurate prediction. We also consider the domain knowledge in modeling process. Several supplementary constructed features are examined to enhance the final prediction accuracy in addition to the raw data from sensors. To test the feasibility and efficiency of this method, we select an industrial case based on Industrial Internet of Things (IIoT). This Tailings Thickener is from FLSmidth with multiple sensors. The comparative results support this method has favorable prediction accuracy, which is more than 10% lower than other time series prediction models in some common error indices. We also try to interpret our method with additional ablation experiments for different features and attention mechanisms. By employing mean absolute error index to evaluate the models, experimental result reports that enhanced features and dual-attention modules reduce error of fitting ~5% and ~11%, respectively.

7.
Sensors (Basel) ; 19(19)2019 Oct 06.
Article in English | MEDLINE | ID: mdl-31590441

ABSTRACT

Recently, many related algorithms have been proposed to find an efficient wireless sensor network with good sustainability, a stable connection, and a high covering rate. To further improve the coverage rate of movable wireless sensor networks under the condition of guaranteed connectivity, this paper proposes an adaptive, discrete space oriented wolf pack optimization algorithm for a movable wireless sensor network (DSO-WPOA). Firstly, a strategy of adaptive expansion based on a minimum overlapping full-coverage model is designed to achieve minimum overlap and no-gap coverage for the monitoring area. Moreover, the adaptive shrinking grid search wolf pack optimization algorithm (ASGS-CWOA) is improved to optimize the movable wireless sensor network, which is a discrete space oriented problem. This improvement includes the usage of a target-node probability matrix and the design of an adaptive step size method, both of which work together to enhance the convergence speed and global optimization ability of the algorithm. Theoretical research and experimental results indicate that compared with the coverage algorithm based on particle swarm optimization (PSO-WSN) and classical virtual force algorithm, the newly proposed algorithm possesses the best coverage rate, better stability, acceptable performance in terms of time, advantages in energy savings, and no gaps.

8.
Sensors (Basel) ; 19(14)2019 Jul 18.
Article in English | MEDLINE | ID: mdl-31323780

ABSTRACT

With the rapid development of mobile networks and smart terminals, mobile crowdsourcing has aroused the interest of relevant scholars and industries. In this paper, we propose a new solution to the problem of user selection in mobile crowdsourcing system. The existing user selection schemes mainly include: (1) find a subset of users to maximize crowdsourcing quality under a given budget constraint; (2) find a subset of users to minimize cost while meeting minimum crowdsourcing quality requirement. However, these solutions have deficiencies in selecting users to maximize the quality of service of the task and minimize costs. Inspired by the marginalism principle in economics, we wish to select a new user only when the marginal gain of the newly joined user is higher than the cost of payment and the marginal cost associated with integration. We modeled the scheme as a marginalism problem of mobile crowdsourcing user selection (MCUS-marginalism). We rigorously prove the MCUS-marginalism problem to be NP-hard, and propose a greedy random adaptive procedure with annealing randomness (GRASP-AR) to achieve maximize the gain and minimize the cost of the task. The effectiveness and efficiency of our proposed approaches are clearly verified by a large scale of experimental evaluations on both real-world and synthetic data sets.

9.
Micron ; 116: 5-14, 2019 01.
Article in English | MEDLINE | ID: mdl-30219739

ABSTRACT

The inner structure of a material is called its microstructure. It stores the genesis of a material and determines all the physical and chemical properties. However, the microstructure is highly complex and numerous image defects such as vague or missing boundaries formed during sample preparation, which makes it difficult to extract the grain boundaries precisely. In this work, we address the task of grain boundary detection in microscopic image processing and develop a graph-cut based method called Fast-FineCut to solve the problem. Our algorithm makes two key contributions: (1) An improved approach that incorporates 3D information between slices as domain knowledge, which can detect the boundaries precisely, even for the vague and missing boundaries. (2) A local processing method based on overlap-tile strategy, which can not only solve the "chain scission" problem at the edge of images, but also economize on the consumption of computing resources. We conduct experiments on a stack of 296 slices of microscopic images of polycrystalline iron (1600 × 2800) and compare the performance against several state-of-the-art boundary detection methods. We conclude that Fast-FineCut can detect boundaries effectively and efficiently.

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