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1.
Biochimie ; 211: 25-34, 2023 Aug.
Article in English | MEDLINE | ID: mdl-36842626

ABSTRACT

Differential regulation of a gene having either canonical or non-canonical cyclic AMP response element (CRE) in its promoter is primarily accomplished by its interactions with CREB (cAMP-response element binding protein). The present study aims to delineate the mechanism of the CREB-CRE interactions at the Oncostatin-M (osm) promoter by in vitro and in silico approaches. The non-canonical CREosm consists of two half-CREs separated by a short intervening sequence of 9 base pairs. In this study, in vitro binding assays revealed that out of the two CRE half-sites, the right half-CRE was indispensable for binding of CREB, while the left sequence showed weaker binding ability and specificity. Genome-wide modeling and high throughput free energy calculations for the energy-minimized models containing CREB-CREosm revealed that there was no difference in the binding of CREB to the right half of CREosm site when compared to the entire CREosm. These results were in accordance with the in vitro studies, confirming the indispensable role of the right half-CREosm site in stable complex formation with the CREB protein. Additionally, conversion of the right half-CREosm site to a canonical CRE palindrome showed stronger CREB binding, irrespective of the presence or absence of the left CRE sequence. Thus, the present study establishes an interesting insight into the interaction of CREB with a CRE variant located at the far end of a TATA-less promoter of a cytokine-encoding gene, which in turn could be involved in the regulation of transcription under specific conditions.


Subject(s)
Activating Transcription Factor 2 , Cyclic AMP , Oncostatin M , Response Elements , Humans , Activating Transcription Factor 2/metabolism , Cyclic AMP/metabolism , Oncostatin M/genetics , Promoter Regions, Genetic , U937 Cells , Gene Expression Regulation , Transcription, Genetic
2.
Biochem J ; 477(19): 3803-3818, 2020 10 16.
Article in English | MEDLINE | ID: mdl-32926159

ABSTRACT

hTERT, the catalytic component of the human telomerase enzyme, is regulated by post-translational modifications, like phosphorylation and ubiquitination by multiple proteins which remarkably affects the overall activity of the enzyme. Here we report that hTERT gets SUMOylated by SUMO1 and polycomb protein CBX4 acts as the SUMO E3 ligase of hTERT. hTERT SUMOylation positively regulates its telomerase activity which can be inhibited by SENP3-mediated deSUMOylation. Interestingly, we have established a new role of hTERT SUMOylation in the repression of E-cadherin gene expression and consequent triggering on the epithelial-mesenchymal-transition (EMT) program in breast cancer cells. We also observed that catalytically active CBX4, leads to retention of hTERT/ZEB1 complex onto E-cadherin promoter leading to its repression through hTERT-SUMOylation. Further through wound healing and invasion assays in breast cancer cells, we showed the tumor promoting ability of hTERT was significantly compromised upon overexpression of SUMO-defective mutant of hTERT. Thus our findings establish a new post-translational modification of hTERT which on one hand is involved in telomerase activity maintenance and on the other hand plays a crucial role in the regulation of gene expression thereby promoting migration and invasion of breast cancer cells.


Subject(s)
Antigens, CD/metabolism , Breast Neoplasms/metabolism , Cadherins/metabolism , Cell Movement , Ligases/metabolism , Neoplasm Proteins/metabolism , Polycomb-Group Proteins/metabolism , Telomerase/metabolism , Transcription, Genetic , Antigens, CD/genetics , Breast Neoplasms/genetics , Breast Neoplasms/pathology , Cadherins/genetics , Female , HeLa Cells , Humans , Ligases/genetics , MCF-7 Cells , Neoplasm Invasiveness , Neoplasm Proteins/genetics , Polycomb-Group Proteins/genetics , Telomerase/genetics
3.
Biochem J ; 475(2): 477-494, 2018 01 31.
Article in English | MEDLINE | ID: mdl-29269396

ABSTRACT

Oncostatin-M (OSM) is a pleotropic cytokine belonging to the interleukin-6 family. Differential expression of OSM in response to varying stimuli and exhibiting repertoire of functions in different cells renders it challenging to study the mechanism of its expression. Prostaglandin E2 (PGE2) transcriptionally increased osm levels. In silico studies of ∼1 kb upstream of osm promoter region yielded the presence of CRE (cyclic AMP response element)-like sites at the distal end (CREosm). Deletion and point mutation of CREosm clearly indicated that this region imparted an important role in PGE2-mediated transcription. Nuclear protein(s) from PGE2-treated U937 cells, bound to this region, was identified as CRE-binding protein (CREB). CREB was phosphorylated on treatment and was found to be directly associated with CREosm The presence of cofactors p300 and CREB-binding protein in the complex was confirmed. A marked decrease in CREB phosphorylation, binding and transcriptional inhibition on treatment with PKA (protein kinase A) inhibitor, H89 (N-[2-[[3-(4-bromophenyl)-2-propenyl]amino]ethyl]-5-soquinolinesulfonamide), revealed the role of phosphorylated CREB in osm transcription. Additionally, other nuclear protein(s) were specifically associated with the proximal GC region (GCosm) post PGE2 treatment, later confirmed to be specificity protein 1 (Sp1). Interestingly, Sp1 bound to the proximal osm promoter was found to be associated with phospho-CREB-p300 complex bound to the distal osm promoter. Knockdown of Sp1 abrogated the expression and functionality of OSM. Thus, the present study conclusively proves that these transcription factors, bound at the distal and proximal promoter elements are found to associate with each other in a DNA-dependent manner and both are responsible for the PGE2-mediated transcriptional up-regulation of Oncostatin-M.


Subject(s)
Cyclic AMP Response Element-Binding Protein/genetics , Dinoprostone/pharmacology , Gene Expression Regulation , Oncostatin M/genetics , Sp1 Transcription Factor/genetics , Transcription, Genetic , Binding Sites , CREB-Binding Protein/genetics , CREB-Binding Protein/metabolism , Cyclic AMP/metabolism , Cyclic AMP Response Element-Binding Protein/metabolism , Cyclic AMP-Dependent Protein Kinases/antagonists & inhibitors , Cyclic AMP-Dependent Protein Kinases/genetics , Cyclic AMP-Dependent Protein Kinases/metabolism , E1A-Associated p300 Protein/genetics , E1A-Associated p300 Protein/metabolism , Humans , Isoquinolines/pharmacology , Mutagenesis, Site-Directed , Oncostatin M/metabolism , Phosphorylation/drug effects , Point Mutation , Promoter Regions, Genetic , Protein Binding , Protein Kinase Inhibitors/pharmacology , Response Elements , Signal Transduction , Sp1 Transcription Factor/metabolism , Sulfonamides/pharmacology , U937 Cells
4.
Exp Cell Res ; 361(1): 85-92, 2017 12 01.
Article in English | MEDLINE | ID: mdl-28987542

ABSTRACT

Messenchymal to epithelial transition (MET) is a significant physiological phenomenon involved in embryogenesis and cancer. This study aims at investigating the mechanism of microRNA-20a (miR-20a) mediated regulation of mesenchymal to epithelial transition and identification of its direct target genes in breast cancer cell-line, MDA-MB-231. Reduced migratory and invasive property, altered cellular morphology along with reduced capability for attachment to basement membrane was acquired by over-expression of miR-20a in invasive MDA-MB-231 cell-line initially expressing low level of this micro-RNA, indicating direct correlation between abundance of miR-20a and metastatic property. The switch from mesenchymal to epithelial cells mediated by miR-20a involved post-transcriptional down-regulation of twist1, which in turn controls downstream epithelial markers like E-cadherin, claudin and mesenchymal markers like N-cadherin, fibronectin, the crucial players of mesenchymal to epithelial transition (MET). Furthermore, another key component, TGF-ß and one of its receptors (TGFBR2) were found to be down-regulated by miR-20a. Additionally, reporter assay established that post-transcriptional down-regulation of TGFBR2 occurred through direct binding of miR-20a to its 3'UTR, thus abrogating the TGF-ß signaling pathway resulting in inhibition of MET. Delineating the underlying molecular mechanism of miR-20a-mediated MET and defining the target genes will help us to introduce a miRNA-mediated effective therapeutic strategy against breast cancer.


Subject(s)
Breast Neoplasms/pathology , Epithelial-Mesenchymal Transition , Gene Expression Regulation, Neoplastic , MicroRNAs/genetics , Nuclear Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Receptors, Transforming Growth Factor beta/metabolism , Twist-Related Protein 1/metabolism , Antigens, CD , Apoptosis , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , Cadherins/genetics , Cadherins/metabolism , Cell Adhesion , Cell Movement , Cell Proliferation , Female , Humans , Nuclear Proteins/genetics , Protein Serine-Threonine Kinases/genetics , Receptor, Transforming Growth Factor-beta Type II , Receptors, Transforming Growth Factor beta/genetics , Tumor Cells, Cultured , Twist-Related Protein 1/genetics
5.
Biochem J ; 474(14): 2349-2363, 2017 07 03.
Article in English | MEDLINE | ID: mdl-28512205

ABSTRACT

Leukemia inhibitory factor (LIF) is a potent pleiotropic cytokine involved in diverse biological activities, thereby requiring precise spatial and temporal control of its expression. The present study reveals that enhanced expression of LIF in response to PMA (phorbol-12-myristate-13-acetate) in human histiocytic lymphoma cell line U937 largely happens through stabilization of its mRNA. Functional characterization of the long 3'-untranslated region of human lif mRNA revealed several conserved sequences with conventional cis-acting elements. A 216 nucleotide containing proximal cis-element with two AUUUA pentamers and four poly-rC sequences demonstrated significant mRNA destabilizing potential, which, on treatment with PMA, showed stabilizing activity. Affinity chromatography followed by western blot and RNA co-immunoprecipitation of PMA-treated U937 extract identified Nucleolin and PCBP1 as two protein trans-factors interacting with lif mRNA, specifically to the proximal non-conventional AU-rich region. PMA induced nucleo-cytoplasmic translocation of both Nucleolin and PCBP1. RNA-dependent in vivo co-association of both these proteins with lif mRNA was demonstrated by decreased co-precipitation in the presence of RNase. Ectopic overexpression of Nucleolin showed stabilization of both intrinsic lif mRNA and gfp reporter, whereas knockdown of Nucleolin and PCBP1 demonstrated a significant decrease in both lif mRNA and protein levels. Collectively, this report establishes the stabilization of lif mRNA by PMA, mediated by the interactions of two RNA-binding proteins, Nucleolin and PCBP1 with a proximal cis-element.


Subject(s)
Carcinogens/toxicity , Heterogeneous-Nuclear Ribonucleoproteins/metabolism , Leukemia Inhibitory Factor/metabolism , Neoplasm Proteins/metabolism , Phosphoproteins/metabolism , RNA, Messenger/metabolism , RNA-Binding Proteins/metabolism , Tetradecanoylphorbol Acetate/toxicity , 3' Untranslated Regions/drug effects , Animals , Base Sequence , Conserved Sequence , DNA-Binding Proteins , Gene Expression Regulation, Neoplastic/drug effects , Genes, Reporter/drug effects , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Heterogeneous-Nuclear Ribonucleoproteins/antagonists & inhibitors , Heterogeneous-Nuclear Ribonucleoproteins/genetics , Humans , Leukemia Inhibitory Factor/chemistry , Leukemia Inhibitory Factor/genetics , Neoplasm Proteins/antagonists & inhibitors , Neoplasm Proteins/chemistry , Neoplasm Proteins/genetics , Phosphoproteins/antagonists & inhibitors , Phosphoproteins/genetics , Protein Transport/drug effects , RNA/metabolism , RNA Interference , RNA Stability/drug effects , RNA, Messenger/chemistry , RNA-Binding Proteins/antagonists & inhibitors , RNA-Binding Proteins/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , U937 Cells , Nucleolin
6.
PLoS One ; 11(12): e0168488, 2016.
Article in English | MEDLINE | ID: mdl-28033383

ABSTRACT

Advancement in cancer therapy requires a better understanding of the detailed mechanisms that induce death in cancer cells. Besides apoptosis, themode of other types of cell death has been increasingly recognized in response to therapy. Paraptosis is a non-apoptotic alternative form of programmed cell death, morphologically) distinct from apoptosis and autophagy. In the present study, Withaferin-A (WA) induced hyperpolarization of mitochondrial membrane potential and formation of many cytoplasmic vesicles. This was due to progressive swelling and fusion of mitochondria and dilation of endoplasmic reticulum (ER), forming large vacuolar structures that eventually filled the cytoplasm in human breast cancer cell-lines MCF-7 and MDA-MB-231. The level of indigenous paraptosis inhibitor, Alix/AIP-1 (Actin Interacting Protein-1) was down-regulated by WA treatment. Additionally, prevention of WA-induced cell death and vacuolation on co-treatment with protein-synthesis inhibitor indicated requirement of de-novo protein synthesis. Co-treatment with apoptosis inhibitor resulted in significant augmentation of WA-induced death in MCF-7 cells, while partial inhibition in MDA-MB-231 cells; implyingthat apoptosis was not solely responsible for the process.WA-mediated cytoplasmic vacuolationcould not be prevented by autophagy inhibitor wortmanninas well, claiming this process to be a non-autophagic one. Early induction of ROS (Reactive Oxygen Species)by WA in both the cell-lines was observed. ROS inhibitorabrogated the effect of WA on: cell-death, expression of proliferation-associated factor andER-stress related proteins,splicing of XBP-1 (X Box Binding Protein-1) mRNA and formation of paraptotic vacuoles.All these results conclusively indicate thatWA induces deathin bothMCF-7 and MDA-MB-231 cell lines byROS-mediated paraptosis.


Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Breast Neoplasms/pathology , Reactive Oxygen Species/metabolism , Withanolides/pharmacology , Autophagy/drug effects , Caspase Inhibitors/pharmacology , Caspases/metabolism , Humans , MCF-7 Cells , Membrane Potential, Mitochondrial/drug effects , Oxidative Stress/drug effects , Vacuoles/drug effects , Vacuoles/metabolism
7.
Cytokine ; 88: 209-213, 2016 12.
Article in English | MEDLINE | ID: mdl-27676154

ABSTRACT

Oncostatin-M (OSM), an IL-6 family cytokine, exhibits varied roles in different patho-physiological conditions. Differential expression of OSM in response to varying stimuli indicates importance of its regulation of expression. The present study illustrated transcriptional induction of osm on treatment with chemical inducer, phorbol-12-myristate-13-acetate (PMA). Following initial hours of PMA treatment, a nuclear protein C/EBP-ß binds specifically to the CCAAT consensus sequence at the proximal end of the OSM promoter. Genistein (a specific Tyr phosphorylation inhibitor) leads to the interaction of CHOP (C/EBP Homologous Protein) with C/EBP-ß, thus negatively regulating it. Knockdown of C/EBP-ß also leads to inhibition of PMA-mediated OSM induction.


Subject(s)
CCAAT-Enhancer-Binding Protein-beta/metabolism , Oncostatin M/biosynthesis , Response Elements , Tetradecanoylphorbol Acetate/pharmacology , Transcription Factor CHOP/metabolism , Transcription, Genetic/drug effects , CCAAT-Enhancer-Binding Protein-beta/genetics , Genistein/pharmacology , Humans , Oncostatin M/genetics , Transcription Factor CHOP/genetics , U937 Cells
8.
J Cell Biochem ; 117(4): 988-99, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26399567

ABSTRACT

Oncostatin-M (OSM) is a patho-physiologically important pleiotropic, multifunctional cytokine. OSM mRNA sequence analysis revealed that its 3'UTR contains three highly conserved GC-rich cis-elements (GCREs) whose role in mRNA stability is unidentified. In the present study, the functional role of the proximal GC-rich region of osm 3'-UTR (GCRE-1) in post-transcriptional regulation of osm expression in U937 cells was assessed by transfecting construct containing GCRE-1 at 3'-end of a fairly stable reporter gene followed by analysis of the expression of the reporter. GCRE-1 showed mRNA destabilizing activity; however, upon PMA treatment the reporter message containing GCRE-1 was stabilized. This stabilization is owing to a time-dependent progressive binding of trans-factors (at least five proteins) to GCRE-1 post-PMA treatment. Nucleolin was identified as one of the proteins in the RNP complex of GCRE-1 with PMA-treated U937 cytosolic extracts by oligo-dT affinity chromatography of poly-adenylated GCRE-1. Immuno-blot revealed time-dependent enhancement of nucleolin in the cytoplasm which in turn directly binds GCRE-1. RNA co-immunoprecipitation confirmed the GCRE-1-nucleolin interaction in vivo. To elucidate the functional role of nucleolin in stabilization of osm mRNA, nucleolin was overexpressed in U937 cells and found to stabilize the intrinsic osm mRNA, where co-transfection with the reporter containing GCRE-1 confirms the role of GCRE-1 in stabilization of the reporter mRNA. Thus, in conclusion, the results asserted that PMA treatment in U937 cells leads to cytoplasmic translocation of nucleolin that directly binds GCRE-1, one of the major GC-rich instability elements, thereby stabilizing the osm mRNA.


Subject(s)
3' Untranslated Regions , Monocytes/metabolism , Oncostatin M/genetics , Phosphoproteins/genetics , RNA Stability , RNA-Binding Proteins/genetics , Base Composition , Binding Sites , Cell Line, Tumor , Gene Expression Regulation , Humans , Monocytes/cytology , Monocytes/drug effects , Oncostatin M/metabolism , Phosphoproteins/metabolism , Plasmids/chemistry , Plasmids/metabolism , Protein Binding , RNA-Binding Proteins/metabolism , Signal Transduction , Tetradecanoylphorbol Acetate/pharmacology , Transfection , Nucleolin
9.
Nutr Cancer ; 65(4): 611-22, 2013.
Article in English | MEDLINE | ID: mdl-23659453

ABSTRACT

Diallyl disulfide (DADS), the major organosulfur component of processed garlic is very effective in chemoprevention of several types of cancers; however, its detailed mechanism is yet to be divulged. Present study shows antiproliferative activity of DADS against human leukemic cell-lines, mainly U937. DADS induced transient G2/M phase arrest, which is evident from FACS analysis. The results revealed that a significant transcriptional induction of p21 happened in early hours of treatment, which is due to increased nuclear translocation of NF-κB and its specific binding to p21 promoter. However, in the later hours, G2/M arrest is lost leading to apoptosis via intrinsic mitochondria-mediated pathway through generation of reactive oxygen species followed by changes in mitochondrial membrane potential. Western blots indicate release of cytochrome-c, activation of caspase-3, cleavage of PARP1, and finally decrease in bcl-2 levels. In addition, inactivation of NF-κB by its inhibitor BAY 11-7085 causes early onset of apoptosis without any transient G2/M arrest. Thus, in conclusion, DADS induces reversible G2/M arrest through NF-κB mediated pathway in human leukemic cell lines, like U937, K562, and Jurkat, lacking wild type p53. However, G2/M arrest is lost owing to the incapability of the damage repair system that leads to apoptosis.


Subject(s)
Allyl Compounds/pharmacology , Disulfides/pharmacology , Leukemia/drug therapy , NF-kappa B/metabolism , Antineoplastic Agents, Phytogenic/pharmacology , Apoptosis/drug effects , Cell Line, Tumor , Cyclin-Dependent Kinase Inhibitor p21/genetics , G2 Phase Cell Cycle Checkpoints/drug effects , Garlic/chemistry , Gene Expression Regulation, Leukemic/drug effects , Humans , Leukemia/metabolism , Leukemia/pathology , M Phase Cell Cycle Checkpoints/drug effects , Mitochondria/drug effects , Mitochondria/metabolism , NF-kappa B/antagonists & inhibitors , Nitriles , Sulfones
10.
Biochim Biophys Acta ; 1820(12): 1951-70, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22967758

ABSTRACT

BACKGROUND: α-Eleostearic acid and punicic acid, two typical conjugated linolenic acid (CLnA) isomers present in bitter gourd and snake gourd oil respectively, exhibit contrasting cis-trans configuration which made them biologically important. METHODS: Rats were divided into six groups. Group 1 was control and group 2 was treated control. Rats in the groups 3 and 4 were treated with mixture of α-eleostearic acid and punicic acid (1:1) (0.5% and 1.0% respectively) while rats in the groups 5 and 6 were treated with 0.5% of α-eleostearic acid and 0.5% of punicic acid respectively along with sodium arsenite by oral gavage once per day. RESULTS: Results showed that increase in nitric oxide synthase (NOS) activity, inflammatory markers expression, platelet aggregation, lipid peroxidation, protein oxidation, DNA damage and altered expression of liver X receptor-α (LXR-α) after arsenite treatment were restored with the supplementation of oils containing CLnA isomers. Altered activities of different antioxidant enzymes such as superoxide dismutase, catalase, glutathione peroxidase, glutathione reductase and ferric reducing ability of plasma (FRAP) also restored after oil supplementation. Altered morphology and fluidity of erythrocyte membrane studied by atomic force and scanning electron microscopy, after stress induction were significantly improved due to amelioration in cholesterol/phospholipid ratio and fatty acid profile of membrane. Oils treatment also improved morphology of liver and fatty acid composition of hepatic lipid. CONCLUSIONS: Overall two isomers showed synergistic antioxidant and anti-inflammatory effect against induced perturbations and membrane disintegrity. GENERAL SIGNIFICANCE: Synergistic antioxidant and anti-inflammatory role of these CLnA isomers were established by this study.


Subject(s)
Erythrocyte Membrane/drug effects , Inflammation/drug therapy , Membrane Fluidity/drug effects , Models, Animal , Oxidative Stress/drug effects , Plant Oils/pharmacology , alpha-Linolenic Acid/pharmacology , Albinism/drug therapy , Albinism/metabolism , Animals , Antioxidants/pharmacology , Blotting, Western , Brain/drug effects , Brain/metabolism , Catalase/metabolism , Cells, Cultured , DNA Damage/drug effects , Drug Synergism , Enzyme-Linked Immunosorbent Assay , Glutathione Peroxidase/metabolism , Inflammation/metabolism , Lipid Peroxidation/drug effects , Lipids/analysis , Liver/drug effects , Liver/metabolism , Liver X Receptors , Male , NF-kappa B/metabolism , Orphan Nuclear Receptors/metabolism , Oxidation-Reduction , Plant Oils/chemistry , Platelet Aggregation/drug effects , Rats , Superoxide Dismutase/metabolism , alpha-Linolenic Acid/chemistry
11.
Biophys J ; 102(7): 1580-9, 2012 Apr 04.
Article in English | MEDLINE | ID: mdl-22500758

ABSTRACT

Stability and induction of the lysogenic state of bacteriophage λ are balanced by a complex regulatory network. A key feature of this network is the mutually exclusive cooperative binding of a repressor dimer (CI) to one of two pairs of binding sites, O(R)1-O(R)2 or O(R)2-O(R)3. The structural features that underpin the mutually exclusive binding mode are not well understood. Recent studies have demonstrated that CI is an asymmetric dimer. The functional importance of the asymmetry is not fully clear. Due to the asymmetric nature of the CI dimer as well as its binding sites, there are two possible bound orientations. By fluorescence resonance energy transfer measurements we showed that CI prefers one bound orientation. We also demonstrated that the relative configuration of the binding sites is important for CI dimer-dimer interactions and consequent cooperative binding. We proposed that the operator configuration dictates the orientations of the bound CI molecules, which in turn dictates CI cooperative interaction between the O(R)1-O(R)2 or O(R)2-O(R)3, but not both. Modeling suggests that the relative orientation of the C- and N-terminal domains may play an important role in the mutually exclusive nature of the cooperative binding. This work correlates unique structural features of a transcription regulatory protein with the functional properties of a gene regulatory network.


Subject(s)
Gene Regulatory Networks , Repressor Proteins/metabolism , Viral Proteins/metabolism , Bacteriophage lambda/genetics , Bacteriophage lambda/metabolism , Binding Sites , DNA/genetics , DNA/metabolism , Fluorescence Resonance Energy Transfer , Models, Molecular , Protein Multimerization , Protein Structure, Quaternary , Protein Structure, Tertiary , Repressor Proteins/chemistry , Viral Proteins/chemistry
12.
J Biol Chem ; 285(35): 27182-27191, 2010 Aug 27.
Article in English | MEDLINE | ID: mdl-20571027

ABSTRACT

The antiapoptotic Bcl-2 protein is overexpressed in a variety of cancers, particularly leukemias. In some cell types this is the result of enhanced stability of bcl-2 mRNA, which is controlled by elements in its 3'-untranslated region. Nucleolin is one of the proteins that binds to bcl-2 mRNA, thereby increasing its half-life. Here, we examined the site on the bcl-2 3'-untranslated region that is bound by nucleolin as well as the protein binding domains important for bcl-2 mRNA recognition. RNase footprinting and RNA fragment binding assays demonstrated that nucleolin binds to a 40-nucleotide region at the 5' end of the 136-nucleotide bcl-2 AU-rich element (ARE(bcl-2)). The first two RNA binding domains of nucleolin were sufficient for high affinity binding to ARE(bcl-2). In RNA decay assays, ARE(bcl-2) transcripts were protected from exosomal decay by the addition of nucleolin. AUF1 has been shown to recruit the exosome to mRNAs. When MV-4-11 cell extracts were immunodepleted of AUF1, the rate of decay of ARE(bcl-2) transcripts was reduced, indicating that nucleolin and AUF1 have opposing roles in bcl-2 mRNA turnover. When the function of nucleolin in MV-4-11 cells was impaired by treatment with the nucleolin-targeting aptamer AS1411, association of AUF1 with bcl-2 mRNA was increased. This suggests that the degradation of bcl-2 mRNA induced by AS1411 results from both interference with nucleolin protection of bcl-2 mRNA and recruitment of the exosome by AUF1. Based on our findings, we propose a model that illustrates the opposing roles of nucleolin and AUF1 in regulating bcl-2 mRNA stability.


Subject(s)
3' Untranslated Regions , Heterogeneous-Nuclear Ribonucleoprotein D/metabolism , Models, Biological , Phosphoproteins/metabolism , Proto-Oncogene Proteins c-bcl-2/biosynthesis , RNA Stability/physiology , RNA-Binding Proteins/metabolism , Aptamers, Nucleotide , HeLa Cells , Heterogeneous Nuclear Ribonucleoprotein D0 , Heterogeneous-Nuclear Ribonucleoprotein D/genetics , Humans , Leukemia/genetics , Leukemia/mortality , Oligodeoxyribonucleotides/pharmacology , Phosphoproteins/antagonists & inhibitors , Phosphoproteins/genetics , Protein Binding/drug effects , Protein Binding/physiology , Protein Structure, Tertiary , Proto-Oncogene Proteins c-bcl-2/genetics , RNA Stability/drug effects , RNA, Neoplasm/genetics , RNA, Neoplasm/metabolism , RNA-Binding Proteins/antagonists & inhibitors , RNA-Binding Proteins/genetics , Nucleolin
13.
Mol Cancer Res ; 7(8): 1354-66, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19671677

ABSTRACT

Overexpression of the proto-oncogene bcl-2 promotes abnormal cell survival by inhibiting apoptosis. Expression of bcl-2 is determined, in part, by regulatory mechanisms that control the stability of bcl-2 mRNA. Elements in the 3'-untranslated region of bcl-2 mRNA have been shown to play a role in regulating the stability of the message. Previously, it was found that the RNA binding proteins nucleolin and Ebp1 have a role in stabilizing bcl-2 mRNA in HL60 cells. Here, we have identified HuR as a component of bcl-2 messenger ribonucleoprotein (mRNP) complexes. RNA coimmunoprecipitation assays showed that HuR binds to bcl-2 mRNA in vivo. We also observed an RNA-dependent coprecipitation of HuR and nucleolin, suggesting that the two proteins are present in common mRNP complexes. Moreover, nucleolin and HuR bind concurrently to bcl-2 AU-rich element (ARE) RNA in vitro, suggesting separate binding sites for these proteins on bcl-2 mRNA. Knockdown of HuR in A431 cells leads to down-regulation of bcl-2 mRNA and protein levels. Observation of a decreased ratio of bcl-2 mRNA to heterogeneous nuclear RNA in HuR knockdown cells confirmed a positive role for HuR in regulating bcl-2 stability. Recombinant HuR retards exosome-mediated decay of bcl-2 ARE RNA in extracts of HL60 cells. This supports a role for HuR in the regulation of bcl-2 mRNA stability in HL60 cells, as well as in A431 cells. Addition of nucleolin and HuR to HL60 cell extracts produced a synergistic protective effect on decay of bcl-2 ARE RNA. HuR knockdown also leads to redistribution of bcl-2 mRNA from polysomes to monosomes. Thus, HuR seems to play a positive role in both regulation of bcl-2 mRNA translation and mRNA stability.


Subject(s)
Antigens, Surface/metabolism , Carcinoma, Squamous Cell/pathology , Leukemia/pathology , Proto-Oncogene Proteins c-bcl-2/genetics , Proto-Oncogene Proteins c-bcl-2/metabolism , RNA-Binding Proteins/metabolism , Carcinoma, Squamous Cell/genetics , Centrifugation, Density Gradient , ELAV Proteins , ELAV-Like Protein 1 , Gene Expression Regulation, Neoplastic , Gene Knockdown Techniques , HL-60 Cells , Humans , Immunoprecipitation , Leukemia/genetics , Phosphoproteins/metabolism , Polyribosomes/metabolism , Protein Binding , Proto-Oncogene Mas , RNA Stability , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Neoplasm/metabolism , RNA, Small Interfering/metabolism , Recombinant Proteins/metabolism , Regulatory Sequences, Ribonucleic Acid/genetics , Nucleolin
14.
Biochem J ; 410(1): 177-86, 2008 Feb 15.
Article in English | MEDLINE | ID: mdl-17924856

ABSTRACT

OSM (oncostatin M) is a pleiotropic cytokine belonging to the IL (interleukin) 6 family that modulates the growth of some cancer cell lines. We have found that PMA treatment of human U937 lymphoma cells increased the steady-state levels of OSM mRNA. Furthermore, the half-life of OSM mRNA was increased from 2.3 to 6.2 h. Measurement of mRNA/hnRNA (heterogeneous nuclear RNA) ratios in PMA-treated cells suggests further that the increase in OSM mRNA is due to enhanced mRNA stability. Consistent with this, synthetic OSM mRNA transcripts decayed faster in extracts of untreated U937 cells than in extracts of PMA-treated cells. The 3'-untranslated region of OSM mRNA contains a putative ARE (AU-rich element) that may play a role in mRNA stabilization. Addition of the OSM ARE motif to the 3'-end of beta-globin mRNA increased its decay rate in vitro. Decay assays with beta-globin-ARE(OSM) and beta-globin transcripts indicate that PMA induces mRNA stabilization in an ARE-dependent manner. PMA also induces at least five OSM ARE-binding proteins. Supershift assays indicated that HuR is present in PMA-induced OSM mRNA-protein complexes. PMA treatment appears to induce translocation of HuR from the nucleus to the cytoplasm. RNA-decay assays indicated that HuR stabilizes OSM RNA in vitro. Additionally, immunodepletion of HuR from U937 cell extracts led to more rapid decay of OSM transcripts. Collectively, these findings suggest that the ARE plays a role in PMA-induced stabilization of OSM mRNA and that this process involves multiple ARE-binding proteins, including HuR.


Subject(s)
Lymphoma/pathology , Oncostatin M/genetics , RNA, Messenger/genetics , Tetradecanoylphorbol Acetate/pharmacology , Base Sequence , Cloning, Molecular , DNA Primers , Humans , Lymphoma/genetics , Reverse Transcriptase Polymerase Chain Reaction , U937 Cells
15.
Biochem J ; 396(1): 99-107, 2006 May 15.
Article in English | MEDLINE | ID: mdl-16396631

ABSTRACT

The 3'-UTR (untranslated region) of bcl-2 mRNA contains an ARE (AU-rich element) that potentially regulates the stability of bcl-2 mRNA in a cell specific fashion. Previous studies have demonstrated that multiple proteins interact with bcl-2 mRNA in HL-60 (human leukaemia-60) cells, potentially contributing to the overexpression of Bcl-2 protein. Treatment of HL-60 cells with taxol or okadaic acid has been shown to induce destabilization of bcl-2 mRNA, which was associated with decreased binding of trans-acting factors to bcl-2 mRNA. Nucleolin has been identified as one of the bcl-2 mRNA-binding proteins [Sengupta, Bandyopadhyay, Fernandes and Spicer (2004) J. Biol. Chem. 279, 10855-10863]. In an effort to identify additional bcl-2 mRNA-binding proteins, two polypeptides of approx. 45 kDa and 60 kDa were isolated from HL-60 cells by ARE(bcl-2) (transcripts that contain bcl-2 AREs) RNA affinity chromatography. These proteins were identified as the human proliferation associated protein, Ebp1, and human DRBP76 (double stranded RNA-binding protein 76) respectively, by MALDI (matrix-assisted laser-desorption ionization)-MS. RNA electrophoretic mobility shift assays indicated that recombinant Ebp1 binds to ARE(bcl-2) RNA but not to the group 1 ARE present in GM-CSF (granulocyte macrophage-colony stimulating factor) mRNA in vitro. Antibody supershift assays demonstrated that Ebp1 is present in protein-ARE(bcl-2) RNA complexes formed with cytosolic HL-60 extracts. The interaction of Ebp1 with bcl-2 mRNA in HL-60 cells was also demonstrated by RNA co-immunoprecipitation assays. This interaction was not detected in extracts of taxol-treated HL-60 cells. Immunoprecipitation assays further revealed that Ebp1 co-precipitates with nucleolin from HL-60 cytoplasmic extracts. The observation that co-precipitation was decreased when extracts were treated with RNase suggests that Ebp1 and nucleolin are present in the same bcl-2 mRNP (messenger ribonucleoprotein particle) complexes. RNA-decay assays further demonstrated that Ebp1 decreased the rate of decay of beta-globin-ARE(bcl-2) transcripts in HL-60 cell extracts. Collectively, these results indicate a novel function for Ebp1 in contributing to the regulation of bcl-2 expression in HL-60 cells.


Subject(s)
3' Untranslated Regions/genetics , Carrier Proteins/physiology , Genes, bcl-2 , HL-60 Cells/metabolism , Adaptor Proteins, Signal Transducing , Amino Acid Sequence , Carrier Proteins/analysis , Chromatography, Affinity , Cytosol/chemistry , Globins/genetics , Humans , Immunoprecipitation , Macromolecular Substances , Molecular Sequence Data , Nuclear Factor 90 Proteins/analysis , Okadaic Acid/pharmacology , Paclitaxel/pharmacology , Phosphoproteins/physiology , Proto-Oncogene Proteins c-bcl-2/biosynthesis , Proto-Oncogene Proteins c-bcl-2/genetics , RNA, Messenger/metabolism , RNA, Messenger/radiation effects , RNA-Binding Proteins/isolation & purification , RNA-Binding Proteins/metabolism , RNA-Binding Proteins/physiology , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/physiology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Ultraviolet Rays , Nucleolin
16.
Mol Pharmacol ; 67(1): 319-26, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15492114

ABSTRACT

All-trans retinoic acid (ATRA) induces differentiation of promyelocytic leukemia cells, but the mechanisms by which cellular differentiation leads to apoptosis are not well understood. Studies were done to address the question whether ATRA-induced apoptosis is a consequence of destabilization of bcl-2 mRNA and decreased cellular levels of the anti-apoptotic protein, bcl-2. ATRA induced differentiation of HL-60 cells along the granulocytic pathway within 48 h. The half-lives of bcl-2 mRNA in HL-60 cells incubated with ATRA for 48 or 72 h were reduced to 39 and 7% of the corresponding untreated control values, respectively. Cellular differentiation was accompanied by down-regulation of the cytoplasmic levels of nucleolin, a bcl-2 mRNA-stabilizing protein. Binding of a bcl-2 mRNA instability element (AU-rich element-1) to nucleolin in S100 extracts from ATRA-treated cells was decreased to 15% of control within 72 h. The decay of 5' capped, polyadenylated bcl-2 mRNA transcripts containing ARE-1 was more rapid in S100 extracts from ATRA-treated cells compared with untreated cells. However, when recombinant nucleolin was added to extracts of ATRA-treated cells, the rate of bcl-2 mRNA decay was similar to the rate in extracts of untreated cells. These results provide evidence that ATRA-induced apoptosis is a consequence of cellular differentiation, which leads to nucleolin down-regulation and bcl-2 mRNA instability.


Subject(s)
Apoptosis/drug effects , Gene Expression Regulation, Neoplastic/drug effects , Proto-Oncogene Proteins c-bcl-2/genetics , Tretinoin/pharmacology , Base Sequence , Cell Differentiation/drug effects , Cell Division/drug effects , DNA Primers , HL-60 Cells , Humans , Kinetics , RNA, Messenger/genetics
17.
Curr Opin Investig Drugs ; 5(6): 616-22, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15242250

ABSTRACT

Recent evidence suggests that the 3' untranslated region (3' UTR) of some mRNAs is a molecular hotspot for pathology. The 3' UTR of bcl-2 mRNA contains several AU-rich elements (AREs) that promote mRNA destabilization. Recent studies have demonstrated that the protein, nucleolin, binds to an ARE in bcl-2 mRNA, thereby protecting this mRNA from nuclease degradation. All-trans retinoic acid, taxol and okadiac acid induce downregulation or inactivation of nucleolin, which destabilizes bcl-2 mRNA and triggers apoptosis. The ARE instability elements in bcl-2 mRNA are potential therapeutic targets for inducing apoptosis and overcoming drug resistance in cancer cells.


Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Proto-Oncogene Proteins c-bcl-2/genetics , Proto-Oncogene Proteins c-bcl-2/metabolism , RNA Stability/drug effects , RNA, Messenger/metabolism , Animals , Apoptosis/genetics , Cell Line, Tumor , Drug Delivery Systems , Humans , Proto-Oncogene Proteins c-bcl-2/antagonists & inhibitors
18.
J Biol Chem ; 279(12): 10855-63, 2004 Mar 19.
Article in English | MEDLINE | ID: mdl-14679209

ABSTRACT

bcl-2 mRNA contains an AU-rich element (ARE) that functions in regulating bcl-2 stability. Our earlier studies indicated that taxol- or okadaic acid-induced bcl-2 mRNA destabilization in HL-60 cells is associated with decreased binding of trans-acting factors to the ARE. To identify factors that play a role in the regulation of bcl-2 mRNA stability, bcl-2 ARE-binding proteins were purified from HL-60 cells. Three polypeptides of 100, 70, and 32 kDa were isolated from a bcl-2 ARE affinity matrix. Matrix-assisted laser desorption ionization mass spectroscopy analysis identified these proteins as full-length nucleolin and proteolytic fragments of nucleolin. RNA gel shifts assays indicated that recombinant nucleolin (residues 284-707) binds specifically to bcl-2 ARE RNA. In addition, recombinant nucleolin decreases the rate of decay of mRNA in HL-60 cell extracts in an ARE-dependent manner. Taxol or okadaic acid treatment of HL-60 cells results in proteolysis of nucleolin in a similar time frame as drug-induced bcl-2 mRNA down-regulation. These findings suggest that nucleolin functions as a bcl-2-stabilizing factor and that taxol and okadaic acid treatment induces apoptosis in HL-60 cells through a process that involves down-regulation of nucleolin and destabilization of bcl-2 mRNA.


Subject(s)
Genes, bcl-2 , Phosphoproteins/physiology , RNA, Messenger/genetics , RNA-Binding Proteins/physiology , Apoptosis/drug effects , HL-60 Cells , Humans , Okadaic Acid/pharmacology , Paclitaxel/pharmacology , Phosphoproteins/chemistry , Phosphoproteins/drug effects , Protein Binding , RNA, Messenger/chemistry , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/drug effects , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Nucleolin
19.
Biochem Pharmacol ; 66(7): 1151-62, 2003 Oct 01.
Article in English | MEDLINE | ID: mdl-14505794

ABSTRACT

The observation that overexpression of the anti-apoptotic protein Bcl-2 is associated with both cancer development and anti-cancer drug resistance suggests that factors which regulate bcl-2 expression may be important therapeutic targets. We report here that taxol or okadaic acid (OA) treatment of HL-60 cells reduced bcl-2 mRNA steady state levels to 50% of control cell levels in 20-24hr of treatment. The 3'-untranslated region of bcl-2 mRNA contains four potential A+U-rich elements (AREs), which are associated with mRNA destabilization. RNA gel mobility shift assays revealed that HL-60 cell extracts contain proteins that bind to RNA transcripts containing the first bcl-2 ARE (ARE 1). ARE 1 binding activity was substantially reduced in extracts of cells treated for 20 hr with taxol or OA and was abolished after 32 hr of treatment. UV-induced RNA cross-linking assays revealed that untreated HL-60 cell extracts contain approximately eight proteins, ranging in size from 32 to 100 kDa, that bind to ARE 1 RNA. Following 20 hr of taxol or OA treatment, RNA cross-linking to approximately 70 and approximately 38 kDa proteins was greatly reduced, and cross-linking to four proteins of 45-60 kDa sizes was progressively reduced with 10-34 hr of OA or taxol treatment. Collectively, these results suggest a novel action of taxol and OA on bcl-2 expression, which involves bcl-2 mRNA downregulation through inactivation of bcl-2 mRNA stabilizing factors.


Subject(s)
Okadaic Acid/pharmacology , Paclitaxel/pharmacology , Proto-Oncogene Proteins c-bcl-2/metabolism , RNA Stability/drug effects , RNA-Binding Proteins/metabolism , 3T3 Cells , Animals , HL-60 Cells , Humans , Mice , Proto-Oncogene Proteins c-bcl-2/genetics , RNA, Messenger/drug effects , RNA, Messenger/metabolism
20.
J Lipid Res ; 44(7): 1315-21, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12730303

ABSTRACT

We have previously shown that LDL-containing immune complexes (LDL-ICs) induce up-regulation of LDL receptor (LDLR) expression in human macrophages. The present study further investigated the molecular mechanisms leading to LDLR up-regulation by LDL-ICs as well as the signaling pathways involved. Results showed that treatment of U937 histiocytes with LDL-ICs did not increase the precursors and the cleaved forms of sterol-regulatory element binding proteins (SREBPs) 1a and 2, suggesting that SREBPs may not be involved in LDLR up-regulation by LDL-ICs. Promoter deletion and mutation studies showed that the AP-1 binding sites were essential for LDL-IC-stimulated LDLR expression. Electrophoretic mobility shift assays further demonstrated that LDL-ICs stimulated transcription factor AP-1 activity. Studies assessing the signaling pathways involved in LDLR up-regulation by LDL-ICs showed that the up-regulation of LDLR was extracellular signal-regulated kinase (ERK) dependent. In conclusion, the present study shows that LDL-ICs up-regulate LDLR expression via the ERK signaling pathway and the AP-1 motif-dependent transcriptional activation.


Subject(s)
Lipoproteins, LDL/metabolism , Mitogen-Activated Protein Kinases/metabolism , Transcription Factor AP-1/metabolism , Transcription Factors , Blotting, Western , CCAAT-Enhancer-Binding Proteins/metabolism , DNA-Binding Proteins/metabolism , Gene Deletion , Genes, Reporter , Humans , Macrophages/metabolism , Models, Genetic , Mutagenesis , Mutation , Promoter Regions, Genetic , Protein Binding , Reverse Transcriptase Polymerase Chain Reaction , Signal Transduction , Sterol Regulatory Element Binding Protein 1 , Transcription, Genetic , Transcriptional Activation , Transfection , U937 Cells , Up-Regulation
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