Exploring Differences in Lanthanide Excited State Reactivity Using a Simple Example: The Photophysics of La and Ce Thenoyltrifluoroacetone Complexes.

A series of four lanthanide thenoyltrifluoroacetone (TTA) complexes consisting of two f0 (La3+ and Ce4+) and two f1 (Ce3+) complexes was examined using steady-state and time-resolved spectroscopic techniques. The wide range of spectroscopic techniques presented herein have enabled us to discern the nature of the excited states (charge transfer, CT vs ligand localized, LL) as well as construct a Jablonski diagram for detailing the excited state reactivity within the series of molecules. The wavelength and excitation power dependence for these series of complexes are the first direct verification for the presence of simultaneous competing, noninteracting CT and LL excited states. Additionally, a computational framework is described that can be used to support spectroscopic assignments as a guide for future studies. Finally, the relationship between the obtained photophysics and possible photochemical separation mechanisms is described.

Whispering gallery mode resonators in continuous flow: spectral assignments and sensing with monodisperse microspheres.

Whispering gallery mode resonator (WGMR) microspheres yield highly structured optical spectra that are extremely sensitive to their environment and are of intense interest for use in a variety of sensing applications. Many efforts to leverage the unique sensitivities of WGMRs have relied on stringent experimental requirements to correlate specific spectral shifts/changes to an analyte/stimulus such as (1) precise positional knowledge, (2) reference spectra for each microsphere, and (3) high mechanical stability. Consequently, these factors can hinder adequate mixing or incorporation of analytes and can create challenges for remote sensing. This work describes a continuous flow technique for measuring whispering gallery mode (WGM) spectra of dye-doped microspheres suspended in solution and an accompanying analysis scheme that can extract the local refractive index without a priori knowledge of the microsphere size and position and without a reference spectrum. This measurement technique and analysis scheme was shown to accurately measure the refractive index of a range of alcohol and saline solutions down to a few thousandths of a refractive index unit (RIU). Additionally, a spectral clustering algorithm was applied to the fit results of two batches of microspheres suspended in water and was able to accurately assign spectra back to either batch of microspheres.

Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation.

While transformation of the major monocot crops is currently possible, the process typically remains confined to one or two genotypes per species, often with poor agronomics, and efficiencies that place these methods beyond the reach of most academic laboratories. Here, we report a transformation approach involving overexpression of the maize (Zea mays) Baby boom (Bbm) and maize Wuschel2 (Wus2) genes, which produced high transformation frequencies in numerous previously nontransformable maize inbred lines. For example, the Pioneer inbred PHH5G is recalcitrant to biolistic and Agrobacterium tumefaciens transformation. However, when Bbm and Wus2 were expressed, transgenic calli were recovered from over 40% of the starting explants, with most producing healthy, fertile plants. Another limitation for many monocots is the intensive labor and greenhouse space required to supply immature embryos for transformation. This problem could be alleviated using alternative target tissues that could be supplied consistently with automated preparation. As a major step toward this objective, we transformed Bbm and Wus2 directly into either embryo slices from mature seed or leaf segments from seedlings in a variety of Pioneer inbred lines, routinely recovering healthy, fertile T0 plants. Finally, we demonstrated that the maize Bbm and Wus2 genes stimulate transformation in sorghum (Sorghum bicolor) immature embryos, sugarcane (Saccharum officinarum) callus, and indica rice (Oryza sativa ssp indica) callus.

Agrobacterium-mediated high-frequency transformation of an elite commercial maize (Zea mays L.) inbred line.

KEY MESSAGE: An improved Agrobacterium -mediated transformation protocol is described for a recalcitrant commercial maize elite inbred with optimized media modifications and AGL1. These improvements can be applied to other commercial inbreds. This study describes a significantly improved Agrobacterium-mediated transformation protocol in a recalcitrant commercial maize elite inbred, PHR03, using optimal co-cultivation, resting and selection media. The use of green regenerative tissue medium components, high copper and 6-benzylaminopurine, in resting and selection media dramatically increased the transformation frequency. The use of glucose in resting medium further increased transformation frequency by improving the tissue induction rate, tissue survival and tissue proliferation from immature embryos. Consequently, an optimal combination of glucose, copper and cytokinin in the co-cultivation, resting and selection media resulted in significant improvement from 2.6 % up to tenfold at the T0 plant level using Agrobacterium strain LBA4404 in transformation of PHR03. Furthermore, we evaluated four different Agrobacterium strains, LBA4404, AGL1, EHA105, and GV3101 for transformation frequency and event quality. AGL1 had the highest transformation frequency with up to 57.1 % at the T0 plant level. However, AGL1 resulted in lower quality events (defined as single copy for transgenes without Agrobacterium T-DNA backbone) when compared to LBA4404 (30.1 vs 25.6 %). We propose that these improvements can be applied to other recalcitrant commercial maize inbreds.

Empirical analysis of transcriptional activity in the Arabidopsis genome.

Functional analysis of a genome requires accurate gene structure information and a complete gene inventory. A dual experimental strategy was used to verify and correct the initial genome sequence annotation of the reference plant Arabidopsis. Sequencing full-length cDNAs and hybridizations using RNA populations from various tissues to a set of high-density oligonucleotide arrays spanning the entire genome allowed the accurate annotation of thousands of gene structures. We identified 5817 novel transcription units, including a substantial amount of antisense gene transcription, and 40 genes within the genetically defined centromeres. This approach resulted in completion of approximately 30% of the Arabidopsis ORFeome as a resource for global functional experimentation of the plant proteome.