Multi-decadal improvements in the ecological quality of European rivers are not consistently reflected in biodiversity metrics.

Humans impact terrestrial, marine and freshwater ecosystems, yet many broad-scale studies have found no systematic, negative biodiversity changes (for example, decreasing abundance or taxon richness). Here we show that mixed biodiversity responses may arise because community metrics show variable responses to anthropogenic impacts across broad spatial scales. We first quantified temporal trends in anthropogenic impacts for 1,365 riverine invertebrate communities from 23 European countries, based on similarity to least-impacted reference communities. Reference comparisons provide necessary, but often missing, baselines for evaluating whether communities are negatively impacted or have improved (less or more similar, respectively). We then determined whether changing impacts were consistently reflected in metrics of community abundance, taxon richness, evenness and composition. Invertebrate communities improved, that is, became more similar to reference conditions, from 1992 until the 2010s, after which improvements plateaued. Improvements were generally reflected by higher taxon richness, providing evidence that certain community metrics can broadly indicate anthropogenic impacts. However, richness responses were highly variable among sites, and we found no consistent responses in community abundance, evenness or composition. These findings suggest that, without sufficient data and careful metric selection, many common community metrics cannot reliably reflect anthropogenic impacts, helping explain the prevalence of mixed biodiversity trends.

Chronic exposure to environmental temperature attenuates the thermal sensitivity of salmonids.

Metabolism, the biological processing of energy and materials, scales predictably with temperature and body size. Temperature effects on metabolism are normally studied via acute exposures, which overlooks the capacity for organisms to moderate their metabolism following chronic exposure to warming. Here, we conduct respirometry assays in situ and after transplanting salmonid fish among different streams to disentangle the effects of chronic and acute thermal exposure. We find a clear temperature dependence of metabolism for the transplants, but not the in-situ assays, indicating that chronic exposure to warming can attenuate salmonid thermal sensitivity. A bioenergetic model accurately captures the presence of fish in warmer streams when accounting for chronic exposure, whereas it incorrectly predicts their local extinction with warming when incorporating the acute temperature dependence of metabolism. This highlights the need to incorporate the potential for thermal acclimation or adaptation when forecasting the consequences of global warming on ecosystems.

Anastomotic leak in colorectal cancer surgery: Contribution of gut microbiota and prediction approaches.

AIM: To monitor prospectively the occurrence of colorectal anastomotic leakage (CAL) in patients with colon cancer undergoing resectional surgery, characterizing the microbiota in both faeces and mucosal biopsies of anastomosis. In a second stage, we investigated the ability to predict CAL using machine learning models based on clinical data and microbiota composition. METHOD: A total of 111 patients were included, from whom a faecal sample was obtained, as well as biopsy samples from proximal and distal sites in the healthy margins of the tumour piece. The microorganisms present in the samples were investigated using microbial culture and 16S rDNA massive sequencing. Collagenase and protease production was determined, as well as the presence of genes responsible for expressing enzymes with these activities. Machine learning analyses were developed using clinical and microbiological data. RESULTS: The incidence of CAL was 9.0%, and CAL was associated with collagenase/protease-producing Enterococcus. Significant differences were found in the microbiota composition of proximal and distal biopsy samples, but not in faecal samples, among patients who developed CAL. Clinical predictors of CAL were 5-day C-reactive protein and heart disease, whereas 3-day C-reactive protein and diabetes were negative predictors. CONCLUSION: Biopsy samples from surgical margins, rather than faecal samples, are the most appropriate samples for exploring the contribution of the intestinal microbiota to CAL. Enterococci are only enriched in the anastomosis after surgery, and their collagenases and proteases are involved in the degradation of the anastomotic scar.

Ecosystem-level effects of re-oligotrophication and N:P imbalances in rivers and estuaries on a global scale.

Trends and ecological consequences of phosphorus (P) decline and increasing nitrogen (N) to phosphorus (N:P) ratios in rivers and estuaries are reviewed and discussed. Results suggest that re-oligotrophication is a dominant trend in rivers and estuaries of high-income countries in the last two-three decades, while in low-income countries widespread eutrophication occurs. The decline in P is well documented in hundreds of rivers of United States and the European Union, but the biotic response of rivers and estuaries besides phytoplankton decline such as trends in phytoplankton composition, changes in primary production, ecosystem shifts, cascading effects, changes in ecosystem metabolism, etc., have not been sufficiently monitored and investigated, neither the effects of N:P imbalance. N:P imbalance has significant ecological effects that need to be further investigated. There is a growing number of cases in which phytoplankton biomass have been shown to decrease due to re-oligotrophication, but the potential regime shift from phytoplankton to macrophyte dominance described in shallow lakes has been documented only in a few rivers and estuaries yet. The main reasons why regime shifts are rarely described in rivers and estuaries are, from one hand the scarcity of data on macrophyte cover trends, and from the other hand physical factors such as peak flows or high turbidity that could prevent a general spread of submerged macrophytes as observed in shallow lakes. Moreover, re-oligotrophication effects on rivers may be different compared to lakes (e.g., lower dominance of macrophytes) or estuaries (e.g., limitation of primary production by N instead of P) or may be dependent on river/estuary type. We conclude that river and estuary re-oligotrophication effects are complex, diverse and still little known, and in some cases are equivalent to those described in shallow lakes, but the regime shift is more likely to occur in mid to high-order rivers and shallow estuaries.

Evaluating the biological validity of European river typology systems with least disturbed benthic macroinvertebrate communities.

Humans have severely altered freshwater ecosystems globally, causing a loss of biodiversity. Regulatory frameworks, like the Water Framework Directive, have been developed to support actions that halt and reverse this loss. These frameworks use typology systems that summarize freshwater ecosystems into environmentally delineated types. Within types, ecosystems that are minimally impacted by human activities, i.e., in reference conditions, are expected to be similar concerning physical, chemical, and biological characteristics. This assumption is critical when water quality assessments rely on comparisons to type-specific reference conditions. Lyche Solheim et al. (2019) developed a pan-European river typology system, the Broad River Types, that unifies the national Water Framework Directive typology systems and is gaining traction within the research community. However, it is unknown how similar biological communities are within these individual Broad River Types. We used analysis of similarities and classification strength analysis to examine if the Broad River Types delineate distinct macroinvertebrate communities across Europe and whether they outperform two ecoregional approaches: the European Biogeographical Regions and Illies' Freshwater Ecoregions. We determined indicator and typical taxa for the types of all three typology systems and evaluated their distinctiveness. All three typology systems captured more variation in macroinvertebrate communities than random combinations of sites. The results were similar among typology systems, but the Broad River Types always performed worse than either the Biogeographic Regions or Illies' Freshwater Ecoregions. Despite reaching statistical significance, the statistics of analysis of similarity and classification strength were low in all tests indicating substantial overlap among the macroinvertebrate communities of different types. We conclude that the Broad River Types do not represent an improvement upon existing freshwater typologies when used to delineate macroinvertebrate communities and we propose future avenues for advancement: regionally constrained types, better recognition of intermittent rivers, and consideration of biotic communities.

Drivers of spatio-temporal patterns of salinity in Spanish rivers: a nationwide assessment.

The salinization of freshwaters is a global water quality problem that leads to the biological degradation of aquatic ecosystems. However, little is known about the spatial extent of freshwater salinization and the relative contribution of each human activity (e.g. agriculture, urbanization, mining or shale-gas extraction). Here, we investigated environmental factors that explain spatio-temporal patterns of water salinity and examined the causes, the extent and the degree of salinization of Spanish rivers. Results showed a strong variation in water salinity among river typologies and between river reaches in good and poor ecological status according to the Water Framework Directive. The variation in water salinity was largely explained by a combination of natural (i.e. climate and geology) and anthropogenic (i.e. land use) factors. By contrast, land use factors as urbanization and agriculture were the main drivers of salinization, which affected more than one quarter of the rivers and streams in Spain, especially those in the most arid regions (central and southern regions) and in the main courses of the largest rivers such as the Ebro, Douro and Tajo rivers. The information provided here can be relevant to set priority regions and actions to ameliorate freshwater salinization.This article is part of the theme issue 'Salt in freshwaters: causes, ecological consequences and future prospects'.

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems.

The bioassessment of aquatic ecosystems is currently based on various biotic indices that use the occurrence and/or abundance of selected taxonomic groups to define ecological status. These conventional indices have some limitations, often related to difficulties in morphological identification of bioindicator taxa. Recent development of DNA barcoding and metabarcoding could potentially alleviate some of these limitations, by using DNA sequences instead of morphology to identify organisms and to characterize a given ecosystem. In this paper, we review the structure of conventional biotic indices, and we present the results of pilot metabarcoding studies using environmental DNA to infer biotic indices. We discuss the main advantages and pitfalls of metabarcoding approaches to assess parameters such as richness, abundance, taxonomic composition and species ecological values, to be used for calculation of biotic indices. We present some future developments to fully exploit the potential of metabarcoding data and improve the accuracy and precision of their analysis. We also propose some recommendations for the future integration of DNA metabarcoding to routine biomonitoring programs.

Local environment rather than past climate determines community composition of mountain stream macroinvertebrates across Europe.

Community assembly is determined by a combination of historical events and contemporary processes that are difficult to disentangle, but eco-evolutionary mechanisms may be uncovered by the joint analysis of species and genetic diversity across multiple sites. Mountain streams across Europe harbour highly diverse macroinvertebrate communities whose composition and turnover (replacement of taxa) among sites and regions remain poorly known. We studied whole-community biodiversity within and among six mountain regions along a latitudinal transect from Morocco to Scandinavia at three levels of taxonomic hierarchy: genus, species and haplotypes. Using DNA barcoding of four insect families (>3100 individuals, 118 species) across 62 streams, we found that measures of local and regional diversity and intraregional turnover generally declined slightly towards northern latitudes. However, at all hierarchical levels we found complete (haplotype) or high (species, genus) turnover among regions (and even among sites within regions), which counters the expectations of Pleistocene postglacial northward expansion from southern refugia. Species distributions were mostly correlated with environmental conditions, suggesting a strong role of lineage- or species-specific traits in determining local and latitudinal community composition, lineage diversification and phylogenetic community structure (e.g., loss of Coleoptera, but not Ephemeroptera, at northern sites). High intraspecific genetic structure within regions, even in northernmost sites, reflects species-specific dispersal and demographic histories and indicates postglacial migration from geographically scattered refugia, rather than from only southern areas. Overall, patterns were not strongly concordant across hierarchical levels, but consistent with the overriding influence of environmental factors determining community composition at the species and genus levels.

Long-term dynamics of a floodplain shallow lake in the Pantanal wetland: Is it all about climate?

Hydrological variability over seasonal and multi-annual timescales strongly shapes the ecological structure and functioning of floodplain ecosystems. The current IPCC climate scenario foresees an increase in the frequency of extreme events. This, in conjunction with other anthropogenic disturbances (e.g., river regulation or land-use changes) poses a serious threat to the natural functioning of these ecosystems. In this study we aimed to i) evaluate the long-term variability of the flooded area of the third largest floodplain lake in the Brazilian Pantanal using remote sensing techniques, and ii) analyze the possible factors influencing this variability. Changes in open-water and riparian floodplain-wetland vegetation areas were mapped by applying an ad hoc-developed remote-sensing method (including a newly developed normalized water index, NWI) to 221 Landsat-Thematic Mapper (TM)/Enhanced Thematic Mapper Plus (ETM+) images, acquired between 1984 and 2011. Added to the lake's natural swing between riparian floodplain-wetland vegetation expansion and retraction, our analyses revealed large interannual changes, grouped into three main periods within the studied time interval. Moreover, our results indicate that this floodplain-lake system is losing open-water area, paired with an increase in riparian floodplain-wetland vegetation. The system's long-term dynamics are not all climate related, but are the result of a combination of drivers. The start of the Manso dam's operation upstream of the studied system, and the subsequent river regulation because of the dam operation, coupled with climatic oscillation appear to be responsible for the observed changes. However, other factors which were not considered in this study might also be important in this process and contributing to the reduction of the system's resilience to droughts (e.g., land-use changes). This study illustrates the serious conservation risks that the Pantanal faces in the near future, given the current climate-change scenario and the accumulation of dam building projects in this region.

Effects of sewage effluents and seasonal changes on the metabolism of three Atlantic rivers.

Sewage inputs on fluvial ecosystems affect benthic communities and alter trophic networks resulting in changes on river functioning. Functional indicators (e.g. river metabolism) have been proposed as a valuable tool to evaluate ecosystem impairment. In the present study we monitored river metabolism in spring (few days after a major flood) and in summer (after 35days of low flow conditions) using both single-station and two-stations methods over a 24h period up and downstream of wastewater treatment plant (WWTP) effluents on three Atlantic river reaches located in northern Spain (Europe). Concurrently with river metabolism, we characterized environmental characteristics (flow, velocity, depth, pH, water temperature, nutrients, etc.), benthic macroinvertebrate communities and biofilm (algae and epilithic biomass). Ecosystem Respiration (ER24) was similar at the different periods and locations, but Gross Primary Productivity (GPP) tended to decrease in impacted reaches (downstream WWTPs) and in summer (except in the Saja River). However, the balance of the metabolic processes showed a trend towards autotrophy in the largest river, while WWTP effluents increased its autotrophy. Chlorophyll a concentration was >4 times larger in spring than in summer in all river reaches, while epilithic biomass followed a similar but less obvious pattern. Increase of invertebrate scraper densities (mainly, Potamopyrgus antipodarum) seems to be a plausible explanation for biofilm biomass temporal patterns in all sites (higher in spring than in summer), altering GPP and ER24 patterns. Thus, metabolism rates show different responses to WWTP effluents depending on season and on the relationships among functional and structural components, with special focus on the composition and structure of macroinvertebrate communities. Increasing our understanding of cause-effect relationships on the impairment of aquatic ecosystems needs to account for both structural and functional components and their interactions.

Modelling macroinvertebrate and fish biotic indices: From reaches to entire river networks.

We modelled three macroinvertebrate (IASPT, EPT number of families and LIFE) and one fish (percentage of salmonid biomass) biotic indices to river networks draining a large region (110,000km2) placed in Northern and Eastern Spain. Models were developed using Random Forest and 26 predictor variables (19 predictors to model macroinvertebrate indices and 22 predictors to model the fish index). Predictor variables were related with different environmental characteristics (water quality, physical habitat characteristics, hydrology, topography, geology and human pressures). The importance and effect of predictors on the 4 biotic indices was evaluated with the IncNodePurity index and partial dependence plots, respectively. Results indicated that the spatial variability of macroinvertebrate and fish indices were mostly dependent on the same environmental variables. They decreased in river reaches affected by high mean annual nitrate concentration (>4mg/l) and temperature (>12°C), with low flow water velocity (<0.4m/s) and aquatic plant communities being dominated by macrophytes. These indices were higher in the Atlantic region than in the Mediterranean. This study provides a continuous image of river biological communities used as indicators, which turns very useful to identify the main sources of change in the ecological status of water bodies and assist both, the integrated catchment management and the identification of river reaches for recovery.

Modelling the spatial and seasonal variability of water quality for entire river networks: Relationships with natural and anthropogenic factors.

We model the spatial and seasonal variability of three key water quality variables (water temperature and concentration of nitrates and phosphates) for entire river networks in a large area in northern Spain. Models were developed with the Random Forest technique, using 12 (water temperature and nitrate concentration) and 15 (phosphate concentration) predictor variables as descriptors of several environmental attributes (climate, topography, land-uses, hydrology and anthropogenic pressures). The effect of the different predictors on the response variables was assessed with partial dependence plots and partial correlation analysis. Results indicated that land-uses were important predictors in defining the spatial and seasonal patterns of these three variables. Water temperature was positively related with air temperature and the upstream drainage area, whereas increases in forest cover decreased water temperature. Nitrate concentration was mainly related to the area covered by agricultural land-uses, increasing in winter, probably because of catchment run-off processes. On the other hand, phosphate concentration was highly related to the area covered by urban land-uses in the upstream catchment and to the proximity of the closest upstream effluent. Phosphate concentration increased notably during the low flow period (summer), probably due to the reduction of the dilution capacity. These results provide a large-scale continuous picture of water quality, which could help identify the main sources of change in water quality and assist in the prioritization of river reaches for restoration projects.

Building Virtual Watersheds: A Global Opportunity to Strengthen Resource Management and Conservation.

Modern land-use planning and conservation strategies at landscape to country scales worldwide require complete and accurate digital representations of river networks, encompassing all channels including the smallest headwaters. The digital river networks, integrated with widely available digital elevation models, also need to have analytical capabilities to support resource management and conservation, including attributing river segments with key stream and watershed data, characterizing topography to identify landforms, discretizing land uses at scales necessary to identify human-environment interactions, and connecting channels downstream and upstream, and to terrestrial environments. We investigate the completeness and analytical capabilities of national to regional scale digital river networks that are available in five countries: Canada, China, Russia, Spain, and United States using actual resource management and conservation projects involving 12 university, agency, and NGO organizations. In addition, we review one pan-European and one global digital river network. Based on our analysis, we conclude that the majority of the regional, national, and global scale digital river networks in our sample lack in network completeness, analytical capabilities or both. To address this limitation, we outline a general framework to build as complete as possible digital river networks and to integrate them with available digital elevation models to create robust analytical capabilities (e.g., virtual watersheds). We believe this presents a global opportunity for in-country agencies, or international players, to support creation of virtual watersheds to increase environmental problem solving, broaden access to the watershed sciences, and strengthen resource management and conservation in countries worldwide.

Microdistribution patterns of macroinvertebrate communities upstream and downstream of organic effluents.

The present study analyses the distribution patterns of macroinvertebrate communities in four microhabitats (riffles, glides, leaf litter and bank roots) upstream and downstream of two waste water treatment plant (WWTP) effluents in northern Spain rivers. Macroinvertebrate communities were analysed in November 2006 by taking 5 samples from each of the microhabitats under unaffected (upstream WWTP) and affected (downstream WWTP) conditions, respectively. Water velocity, depth, substrate coarseness and hydraulic stress by means of the Froude number were also estimated at all sampling locations. Under unaffected conditions, the abundance and presence/absence of certain macroinvertebrate taxa were mainly determined by hydraulic characteristics (water velocity and Froude number) and feeding resource availability. However, neither macroinvertebrate richness nor abundance were neither significantly correlated with hydraulic stress nor substrate coarseness, although the number of macroinvertebrate taxa increased in microhabitats with high structural complexity. Macroinvertebrate abundance increased downstream of both WWTPs, while macroinvertebrate richness was not adversely affected by the organic enrichment of water. The structure and composition of macroinvertebrate communities occurring in riffles was similar under unaffected and affected conditions, while communities from leaf litter and submerged bank roots showed important changes above and below the WWTPs, indicating that they are probably the most appropriate communities for water quality assessment.