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1.
Commun Chem ; 6(1): 58, 2023 Mar 28.
Article in English | MEDLINE | ID: mdl-36977767

ABSTRACT

Studying the surface chemistry of functionalized cellulose nanofibrils at atomic scale is an ongoing challenge, mainly because FT-IR, NMR, XPS and RAMAN spectroscopy are limited in sensitivity or resolution. Herein, we show that dynamic nuclear polarization (DNP) enhanced 13C and 15N solid-state NMR is a uniquely suited technique to optimize the drug loading on nanocellulose using aqueous heterogenous chemistry. We compare the efficiency of two conventional coupling agents (DMTMM vs EDC/NHS) to bind a complex prodrug of ciprofloxacin designed for controlled drug release. Besides quantifying the drug grafting, we also evidence the challenge to control the concurrent prodrug adsorption and to optimize washing procedures. We notably highlight the presence of an unexpected prodrug cleavage mechanism triggered by carboxylates at the surface of the cellulose nanofibrils.

2.
Bioorg Chem ; 116: 105390, 2021 11.
Article in English | MEDLINE | ID: mdl-34670332

ABSTRACT

A small library of molecules combining indolizine and N-alkyl pyridinium was synthesized and evaluated in a multi-target-directed-ligand strategy for Alzheimer's disease (AD) treatment. The new compounds were classified in three series depending on the number of methylene residues linking the two heterocycles (Ind-PyCx with x = 0, 2 or 3). The molecules were synthesized from the corresponding bis-pyridines by two-step formation of the indolizine core including mono-alkylation of pyridine and 1,3-dipolar cycloaddition with an alkylpropiolate. Their activities against AD's key-targets were evaluated in vitro: acetyl- and butyrylcholinesterase (AChE and BChE) inhibition, antioxidant properties and inhibition of amyloid fibril formation. None of the three series showed significant activities against all the targets. The Ind-PyC2 and Ind-PyC3 series are active on eeAChE and hAChE (µM IC50 values). Most of the positively charged molecules from these two series also appeared active against eqBChE, however they lost their activity on hBChE. Comparative molecular modeling of 13 and 15 docked in hAChE and hBChE highlighted the importance of the substituent (p-methoxybenzoyl or methyloxycarbonyl, respectively) located on the indolizine C-3 for the binding. The larger molecule 13 fits more tightly at the active site of the two enzymes than 15 that shows a larger degree of freedom. The Ind-PyC2 and Ind-PyC3 hybrids displayed some antioxidant activity when tested at 750 µg/mL (up to 95% inhibition of DPPH radical scavenging for 10). In both series, most hybrids were also able to interact with amyloid fibers, even if the inhibitory effect was observed at a high 100 µM concentration. The Ind-PyC0 molecules stand out completely due to their spectroscopic properties which prevent their evaluation by Ellman's and ThT assays. However, these molecules showed interesting features in the presence of preformed fibers. In particular, the strong increase in fluorescence of 3 in the presence of amyloid fibers is very promising for its use as a fibrillation fluorescent reporter dye.


Subject(s)
Alzheimer Disease/drug therapy , Amyloid/antagonists & inhibitors , Antioxidants/pharmacology , Cholinesterase Inhibitors/pharmacology , Indolizines/pharmacology , Pyridinium Compounds/pharmacology , Acetylcholinesterase/metabolism , Alzheimer Disease/metabolism , Amyloid/metabolism , Antioxidants/chemical synthesis , Antioxidants/chemistry , Biphenyl Compounds/antagonists & inhibitors , Butyrylcholinesterase/metabolism , Cholinesterase Inhibitors/chemical synthesis , Cholinesterase Inhibitors/chemistry , Dose-Response Relationship, Drug , Humans , Indolizines/chemistry , Molecular Structure , Picrates/antagonists & inhibitors , Pyridinium Compounds/chemistry , Structure-Activity Relationship
3.
Carbohydr Polym ; 262: 117952, 2021 Jun 15.
Article in English | MEDLINE | ID: mdl-33838828

ABSTRACT

Nowadays, drug encapsulation and drug release from cellulose nanofibrils systems are intense research topics, and commercial grades of cellulose nanomaterials are currently available. In this work we present an ester-containing prodrug of metronidazole that is covalently bound to cellulose nanofibrils in aqueous suspension through a two-step immobilization procedure involving green chemistry principles. The presence of the drug is confirmed by several characterization tools and methods such as Raman spectroscopy, elemental analysis, Dynamic Nuclear Polarization enhanced NMR. This technique allows enhancing the sensitivity of NMR by several orders of magnitude. It has been used to study cellulose nanofibrils substrates and it appears as the ultimate tool to confirm the covalent nature of the binding through thiol-yne click chemistry. Moreover, the ester function of the immobilized prodrug can be cleaved by specific enzyme activity thus allowing controlled drug release.


Subject(s)
Cellulose/chemistry , Click Chemistry/methods , Metronidazole/chemistry , Nanofibers/chemistry , Prodrugs/chemistry , Anti-Bacterial Agents/chemistry , Cyclic N-Oxides/chemistry , Delayed-Action Preparations/chemistry , Humans , Magnetic Resonance Spectroscopy/methods , Oxidation-Reduction , Spectrum Analysis, Raman/methods , Sulfhydryl Compounds/chemistry , Water/chemistry
4.
Chem Sci ; 11(15): 3868-3877, 2020 Mar 13.
Article in English | MEDLINE | ID: mdl-34122855

ABSTRACT

Cellulose nanofibrils (CNF) are renewable bio-based materials with high specific area, which makes them ideal candidates for multiple emerging applications including for instance on-demand drug release. However, in-depth chemical and structural characterization of the CNF surface chemistry is still an open challenge, especially for low weight percentage of functionalization. This currently prevents the development of efficient, cost-effective and reproducible green synthetic routes and thus the widespread development of targeted and responsive drug-delivery CNF carriers. We show in this work how we use dynamic nuclear polarization (DNP) to overcome the sensitivity limitation of conventional solid-state NMR and gain insight into the surface chemistry of drug-functionalized TEMPO-oxidized cellulose nanofibrils. The DNP enhanced-NMR data can report unambiguously on the presence of trace amounts of TEMPO moieties and depolymerized cellulosic units in the starting material, as well as coupling agents on the CNFs surface (used in the heterogeneous reaction). This enables a precise estimation of the drug loading while differentiating adsorption from covalent bonding (∼1 wt% in our case) as opposed to other analytical techniques such as elemental analysis and conductometric titration that can neither detect the presence of coupling agents, nor differentiate unambiguously between adsorption and grafting. The approach, which does not rely on the use of 13C/15N enriched compounds, will be key to further develop efficient surface chemistry routes and has direct implication for the development of drug delivery applications both in terms of safety and dosage.

5.
Chem Sci ; 9(17): 4152-4159, 2018 May 07.
Article in English | MEDLINE | ID: mdl-29780545

ABSTRACT

Increasing the efficiency of molecular artificial photosynthetic systems is mandatory for the construction of functional devices for solar fuel production. Decoupling the light-induced charge separation steps from the catalytic process is a promising strategy, which can be achieved thanks to the introduction of suitable electron relay units performing charge accumulation. We report here on a novel ruthenium tris-diimine complex able to temporarily store two electrons on a fused dipyridophenazine-pyridoquinolinone π-extended ligand upon visible-light irradiation in the presence of a sacrificial electron donor. Full characterization of this compound and of its singly and doubly reduced derivatives thanks to resonance Raman, EPR and (TD)DFT studies allowed us to localize the two electron-storage sites and to relate charge photoaccumulation with proton-coupled electron transfer processes.

7.
Chemistry ; 23(21): 4967-4972, 2017 Apr 11.
Article in English | MEDLINE | ID: mdl-28124798

ABSTRACT

A series of RuII complexes exhibiting π-extended, acridine-based ancillary chelating heterocycles display high affinity and selectivity for DNA and RNA quadruplexes. The most promising candidates (3, 4) possess remarkable light-up luminophore properties (up to 330-fold luminescence enhancement upon interaction with quadruplexes), enabling them to discriminate quadruplexes from genomic DNA owing to a photochemical mechanism involving DNA protection against non-radiative decay (DAND), thus deviating from the other complexes of this series of ligands that exhibit an excited-state intramolecular proton transfer (ESIPT) that quenches their luminescence. The in vitro and preliminary in cellulo results shown here confirm the interest of this new family of fluorophores as invaluable molecular tools to detect G-quadruplexes in cells.


Subject(s)
DNA/chemistry , Fluorescent Dyes/chemistry , G-Quadruplexes , Organometallic Compounds/chemistry , RNA/chemistry , Ruthenium/chemistry , DNA/metabolism , Ligands , RNA/metabolism
8.
ACS Omega ; 2(12): 9221-9230, 2017 Dec 31.
Article in English | MEDLINE | ID: mdl-30023604

ABSTRACT

We describe the design and optimization of polyfunctional scaffolds based on a fluorescent indolizine core derivatized with various orthogonal groups (amines, esters, oximes, alkynes, etc.). To show one application as tools in biology, the scaffold was used to prepare drug-biotin conjugates that were then immobilized onto avidin-agarose for affinity chromatography. More specifically, the antiangiogenic drug COB223, whose mechanism of action remained unclear, was chosen as a proof-of-concept drug. The drug-selective discrimination of proteins observed after elution of the cell lysates through the affinity columns, functionalized either with the biologically active COB223 or a structurally related inactive analogue (COB236), is a clear indication that the presence of the indolizine core does not limit drug-protein interaction and confirms the usefulness of the indolizine scaffold. Furthermore, the separation of COB223-interacting proteins from human placental extracts unveiled unanticipated protein targets belonging to the family of regulatory RNA-binding proteins, which opens the way to new hypotheses on the mode of action of this antiangiogenic drug.

9.
Dalton Trans ; 45(41): 16298-16308, 2016 Oct 18.
Article in English | MEDLINE | ID: mdl-27711780

ABSTRACT

The preparation and characterization of three series of novel ruthenium(ii) complexes are reported, each series differing by the nature of the ancillary ligands (2,2'-bipyridine - bpy, 1,10-phenanthroline - phen or 1,4,5,8-tetraazaphenanthrene - TAP). The third ligand was either the heptacyclic heterocycle dipyrido[3,2-a:2',3'-c]quinolino[3,2-h]phenazine (dpqp) substituted at position 12 by an hydroxyl (oxo), 2,2-dimethoxyethylamine (DMEA) or halogeno (Cl or Br) substituent, or the octacyclic dipyrido[3,2-a:2',3'-c]pyrido[2,3,4-de]quinolino[3,2-h]phenazine (dppqp), prepared by a multi-step "chemistry on the complex" strategy from [RuL2(oxo-dpqp)](PF6)2. The three steps, halogenation, substitution by a dimethoxyethylamino group and cyclization in trifluoroacetic acid, were performed in reasonable to high yields depending on the nature of the ancillary ligands. Isolation and purification processes were facilitated by the ability to switch the solubility of the complex from aqueous to organic solvents, depending on the counter-ion. All new complexes were fully characterized; in particular their absorption properties were compared by UV-vis spectroscopy. Finally, π-stacking properties induced by these extended ligands were studied by 1H NMR studies and quantum chemical calculations.

10.
Molecules ; 21(3): 332, 2016 Mar 10.
Article in English | MEDLINE | ID: mdl-26978335

ABSTRACT

The cycloaddition of pyridinium ylides with alkynes was investigated under mild conditions. A series of 13 pyridinium salts was prepared by alkylation of 4-substituted pyridines. Their reactivity with propiolic ester or amide in various reaction conditions (different temperatures, solvents, added bases) was studied, and 11 indolizines, with three points of structural variation, were, thus, isolated and characterized. The highest yields were obtained when electron-withdrawing groups were present on both the pyridinium ylide, generated in situ from the corresponding pyridinium salt, and the alkyne (X, Z = ester, amide, CN, carbonyl, etc.). Electron-withdrawing substituents, lowering the acid dissociation constant (pKa) of the pyridinium salts, allow the cycloaddition to proceed at pH 7.5 in aqueous buffers at room temperature.


Subject(s)
Alkynes/chemistry , Cycloaddition Reaction , Pyridinium Compounds/chemistry , Hydrogen-Ion Concentration , Indolizines/chemistry , Molecular Structure , Proton Magnetic Resonance Spectroscopy , Solvents/chemistry
11.
J Med Chem ; 56(19): 7691-705, 2013 Oct 10.
Article in English | MEDLINE | ID: mdl-24083676

ABSTRACT

Aminoglycosides are antibiotic drugs that act through binding to rRNA. In the search for antimicrobial amphiphilic aminoglycosides targeting bacterial membranes, we report here on the discovery of three dialkyl derivatives of the small aminoglycoside neamine active against susceptible and resistant Gram-positive and Gram-negative bacteria. One of these derivatives (R = 2-naphthylpropyl), which has good activity against MRSA and VRSA, showed a low toxicity in eukaryotic cells at 10 µM. The synthesis of amphiphilic paromamine and neamine homologous derivatives pointed out the role of the 6'-amine function of the neamine core in the antibacterial effects. The optimal number of lipophilic substituents to be attached to the neamine core and the corresponding required lipophilicity determined here should permit a more selective targeting of bacterial membranes relative to eukaryotic membranes. This work revealed the existence of windows of lipophilicity necessary for obtaining strong antibacterial effects that should be of interest in the field of antibacterial amphiphilic aminoglycosides.


Subject(s)
Aminoglycosides/chemistry , Anti-Bacterial Agents/chemistry , Framycetin/chemistry , Naphthalenes/chemistry , Aminoglycosides/pharmacology , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial , Framycetin/pharmacology , Gram-Negative Bacteria/drug effects , Microbial Sensitivity Tests , Naphthalenes/pharmacology , Staphylococcus aureus/drug effects , Structure-Activity Relationship
12.
Curr Med Chem ; 20(6): 794-814, 2013 Feb 01.
Article in English | MEDLINE | ID: mdl-23276134

ABSTRACT

The present review focuses on the synthesis and biological evaluation of polycyclic 4(3H)-quinazolinones containing fused aromatic or heteroaromatic rings. The first part of the review is related to compounds with ring fused to the pyrimidine part of the quinazoline core. Most of the quinazolinone alkaloids belong to this class of molecules. The second part presents molecules bearing extra ring(s) fused to the benzo moiety of the quinazolinone skeleton. Their structural diversity opens new fields in the search of active molecules.


Subject(s)
Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Quinazolinones/chemistry , Quinazolinones/pharmacology , Animals , Anti-Infective Agents/chemical synthesis , Antineoplastic Agents/chemical synthesis , Bacteria/drug effects , Bacterial Infections/drug therapy , Chemistry Techniques, Synthetic/methods , Fungi/drug effects , Humans , Mycoses/drug therapy , Neoplasms/drug therapy , Quinazolinones/chemical synthesis
13.
J Med Chem ; 55(13): 6021-32, 2012 Jul 12.
Article in English | MEDLINE | ID: mdl-22698070

ABSTRACT

The 6-aminoglucosamine ring of the aminoglycoside antibiotic neomycin B (ring II) was conjugated to a 16-mer peptide nucleic acid (PNA) targeting HIV-1 TAR RNA. For this purpose, we prepared the aminoglucosamine monomer 15 and attached it to the protected PNA prior to its cleavage from the solid support. We found that the resulting PNA-aminoglucosamine conjugate is stable under acidic conditions, efficiently taken up by the human cells and fairly distributed in both cytosol and nucleus without endosomal entrapment because cotreatment with endosome-disrupting agent had no effect on its cellular distribution. The conjugate displayed very high target specificity in vitro and strongly inhibited Tat mediated transactivation of HIV-1 LTR transcription in a cell culture system. The unique properties of this new class of PNA conjugate suggest it to be a potential candidate for therapeutic application.


Subject(s)
Acetylglucosamine/pharmacokinetics , Anti-HIV Agents/pharmacokinetics , Framycetin/analogs & derivatives , HIV-1/drug effects , Peptide Nucleic Acids/pharmacokinetics , Transcriptional Activation/drug effects , tat Gene Products, Human Immunodeficiency Virus/antagonists & inhibitors , Acetylglucosamine/analogs & derivatives , Acetylglucosamine/chemical synthesis , Anti-HIV Agents/chemical synthesis , Anti-HIV Agents/chemistry , Antiviral Agents/chemistry , Binding Sites/genetics , Biological Availability , Cell Line, Tumor , Cell Nucleus/drug effects , Cell Nucleus/metabolism , Cell Nucleus/ultrastructure , Cytosol/drug effects , Cytosol/metabolism , Cytosol/ultrastructure , Endosomes/drug effects , Endosomes/metabolism , Endosomes/ultrastructure , Fluorescein-5-isothiocyanate/chemistry , Genome, Viral/drug effects , HIV Long Terminal Repeat/drug effects , HIV Long Terminal Repeat/genetics , HIV-1/genetics , Humans , Peptide Nucleic Acids/chemistry , Peptide Nucleic Acids/pharmacology , RNA, Viral/antagonists & inhibitors , RNA, Viral/genetics , Response Elements/drug effects , Spectrometry, Fluorescence , Transcription, Genetic/drug effects , tat Gene Products, Human Immunodeficiency Virus/genetics
14.
Biochim Biophys Acta ; 1808(6): 1716-27, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21291859

ABSTRACT

Aminoglycosides are among the most potent antimicrobials to eradicate Pseudomonas aeruginosa. However, the emergence of resistance has clearly led to a shortage of treatment options, especially for critically ill patients. In the search for new antibiotics, we have synthesized derivatives of the small aminoglycoside, neamine. The amphiphilic aminoglycoside 3',4',6-tri-2-naphtylmethylene neamine (3',4',6-tri-2NM neamine) has appeared to be active against sensitive and resistant P. aeruginosa strains as well as Staphylococcus aureus strains (Baussanne et al., 2010). To understand the molecular mechanism involved, we determined the ability of 3',4',6-tri-2NM neamine to alter the protein synthesis and to interact with the bacterial membranes of P. aeruginosa or models mimicking these membranes. Using atomic force microscopy, we observed a decrease of P. aeruginosa cell thickness. In models of bacterial lipid membranes, we showed a lipid membrane permeabilization in agreement with the deep insertion of 3',4',6-tri-2NM neamine within lipid bilayer as predicted by modeling. This new amphiphilic aminoglycoside bound to lipopolysaccharides and induced P. aeruginosa membrane depolarization. All these effects were compared to those obtained with neamine, the disubstituted neamine derivative (3',6-di-2NM neamine), conventional aminoglycosides (neomycin B and gentamicin) as well as to compounds acting on lipid bilayers like colistin and chlorhexidine. All together, the data showed that naphthylmethyl neamine derivatives target the membrane of P. aeruginosa. This should offer promising prospects in the search for new antibacterials against drug- or biocide-resistant strains.


Subject(s)
Anti-Bacterial Agents/pharmacology , Cell Membrane/drug effects , Framycetin/pharmacology , Pseudomonas aeruginosa/drug effects , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Binding, Competitive , Cell Membrane/chemistry , Cell Membrane/metabolism , Drug Resistance, Bacterial/drug effects , Escherichia coli/drug effects , Escherichia coli/growth & development , Framycetin/analogs & derivatives , Framycetin/chemistry , Framycetin/metabolism , Humans , Lipid Bilayers/chemistry , Lipid Bilayers/metabolism , Lipopolysaccharides/chemistry , Lipopolysaccharides/metabolism , Liposomes/chemistry , Liposomes/metabolism , Microbial Sensitivity Tests , Microscopy, Atomic Force , Molecular Structure , Pseudomonas Infections/drug therapy , Pseudomonas Infections/microbiology , Pseudomonas aeruginosa/growth & development
15.
J Med Chem ; 53(1): 119-27, 2010 Jan 14.
Article in English | MEDLINE | ID: mdl-20000576

ABSTRACT

The aminoglycoside antibiotics bind to the 16S bacterial rRNA and disturb the protein synthesis. One to four hydroxyl functions of the small aminoglycoside neamine were capped with phenyl, naphthyl, pyridyl, or quinolyl rings. The 3',4'- (6), 3',6- (7a), and the 3',4',6- (10a) 2-naphthylmethylene derivatives appeared to be active against sensitive and resistant Staphylococcus aureus strains. 10a also showed marked antibacterial activities against Gram (-) bacteria, including strains expressing enzymes modifying aminoglycosides, efflux pumps, or rRNA methylases. 7a and 10a revealed a weak and aspecific binding to a model bacterial 16S rRNA. Moreover, as compared to neomycin B, 10a showed a lower ability to decrease (3)H leucine incorporation into proteins in Pseudomonas aeruginosa. All together, our results suggest that the 3',4',6-tri-2-naphthylmethylene neamine derivative 10a should act against Gram (-) bacteria through a mechanism different from inhibition of protein synthesis, probably by membrane destabilization.


Subject(s)
Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/pharmacology , Framycetin/chemical synthesis , Framycetin/pharmacology , Gram-Negative Bacteria/drug effects , Staphylococcus aureus/drug effects , Anti-Bacterial Agents/chemistry , Calorimetry , Framycetin/chemistry , Microbial Sensitivity Tests , Molecular Structure , Stereoisomerism , Structure-Activity Relationship
16.
Bioconjug Chem ; 20(11): 2032-46, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19848402

ABSTRACT

With the view to develop novel bioinspired nonviral vectors for gene delivery, we synthesized a series of cationic lipids with a neamine headgroup, which incorporates rings I and II of the natural antibiotic aminoglycoside neomycin B. Indeed, we reasoned that neamine might constitute a straightforward and versatile building block for synthesizing a variety of lipophilic aminoglycosides and modulating their characteristics such as size, topology, lipophilicity, number of charges, and charge density. Neamine derivatives bearing long dialkyl chains, one or two neamine headgroups, and four to ten protonatable amine functions were prepared through the selective alkylation of the 4'- or 5-hydroxyl function in ring I and ring II of neamine, respectively. The transfection activity of the twelve derivatives synthesized was investigated in vitro in gene transfection experiments using several mammalian cell lines. The results allowed us to unveil interesting structure-activity relationships and to identify a formulation incorporating a small neamine derivative as a highly efficient gene delivery system.


Subject(s)
Framycetin/chemistry , Lipids/chemical synthesis , Transfection/methods , Cell Line , Humans , Luciferases/administration & dosage , Luciferases/genetics , Plasmids/administration & dosage , Structure-Activity Relationship
17.
Electrophoresis ; 30(16): 2869-73, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19637217

ABSTRACT

In this paper, a new ligand-exchange -MEKC mode, based on the design of a unique lipohilic species (4'-octadecylneamine derivative), which served both as micelle-forming surfactant (by its hydrophobic part) and central ion-complexing ligand (by its hydrophilic part) is described. The CMC of the used lipophilic neamine derivative was first determined by surface tension measurements. Subsequent NMR experiments were performed in order to investigate the Cu(II) binding properties of the neamine micellar phase. The enantioseparation properties of both the octadecylneamine derivative-Cu(II) MEKC and the native neamine-Cu(II) CE systems were evaluated and compared using the tryptophan racemate as a probe analyte. The effects of several different electrophoretic conditions on the enantiomer migration behavior in the ligand-exchange-MEKC mode were examined. The developed methodology was also applied to the enantioseparation of other analytes such as 1-methyl-tryptophan, 3,5-diiodo-tyrosine and 1-naphtyl-alanine.


Subject(s)
Chromatography, Micellar Electrokinetic Capillary/methods , Chelating Agents , Copper , Ligands , Methanol/chemistry , Micelles , Neomycin/analogs & derivatives , Nuclear Magnetic Resonance, Biomolecular , Stereoisomerism , Surface Tension , Surface-Active Agents/chemistry , Tryptophan/analogs & derivatives , Tryptophan/chemistry
18.
Anal Bioanal Chem ; 393(2): 655-60, 2009 Jan.
Article in English | MEDLINE | ID: mdl-18998115

ABSTRACT

In this paper, we describe the preparation and the evaluation of a porous graphitic carbon (PGC) column coated with a new dinaphthyl derivative of neamine for chiral ligand-exchange (LE) chromatography. It was shown that the graphitic surface/dinaphthyl anchor system efficiently (1.15 micromol/m(2)) and stably (three months of intensive use) adsorbs the neamine template onto the chromatographic support. The resulting coated PGC stationary phase showed appreciable LE-based enantioselective properties towards several native amino acids.


Subject(s)
Amino Acids/analysis , Chromatography, High Pressure Liquid/methods , Framycetin/analogs & derivatives , Graphite/chemistry , Framycetin/chemical synthesis , Framycetin/chemistry , Ligands , Molecular Structure , Porosity , Stereoisomerism , Surface Properties , Time Factors
19.
J Chromatogr A ; 1185(2): 291-5, 2008 Mar 28.
Article in English | MEDLINE | ID: mdl-18295773

ABSTRACT

In this paper, a new class of ligand-exchange chiral stationary phase (LE-CSP) based on the copper complexes of lipophilic aminoglycoside derivatives was reported. Different stationary phases were developed by coating reversed-phase liquid chromatography supports with three neamine derivatives carrying a lipophilic octadecyl chain at the 4', 5 and 6 positions, respectively. The enantioselective ability of these LE neamine-based CSPs was evaluated and the 4'-derivative coated column was found to be the most interesting one for the amino acid resolution. The effects of the variation of several chromatographic parameters on the enantioseparation were evaluated in order to identify the analysis optimal conditions.


Subject(s)
Amino Acids/analysis , Aminoglycosides/analysis , Chromatography, Liquid/methods , Aminoglycosides/chemistry , Copper/chemistry , Stereoisomerism
20.
Oligonucleotides ; 17(3): 302-13, 2007.
Article in English | MEDLINE | ID: mdl-17854270

ABSTRACT

In earlier studies, we found that a conjugate of neamine-polyamide nucleic acid targeting transactivation response element of HIV-1 RNA genome (HIV-1 TAR) displayed anti-HIV-1 activity and sequence-specific cleavage of the target RNA in vitro. Here we show that both the position of conjugation of polyamide nucleic acid (PNA) on neamine and the length of the spacer are critical parameters for conferring cleavage activity to the conjugate. The conjugation of PNA via a spacer incorporating 11 atoms to the 5-position of ring I of the neamine core conferred sequence-specific RNA cleavage activity on the conjugate, while conjugation to the 4'-position of ring II abolished this activity. Similarly, 5-neamine PNA complementary to TAR sequence of HIV-1 genome (PNA(TAR)) conjugates having either a 23-atom spacer or a bulky dansyl group between PNA and the neamine core also resulted in complete loss of cleavage activity. Based on these observations, we propose a mechanism for the observed RNA cleavage catalyzed by the conjugate involving unprotonated and protonated amino groups at the 3-position of ring I and the 6'-position of ring II of the neamine core, respectively.


Subject(s)
Aminoglycosides/metabolism , Framycetin/metabolism , HIV Long Terminal Repeat/genetics , HIV-1/genetics , Oligonucleotides, Antisense/chemistry , Oligonucleotides, Antisense/metabolism , RNA, Viral/metabolism , Aminoglycosides/chemistry , Cell Line , Framycetin/chemistry , HIV-1/metabolism , Humans , Hydrogen-Ion Concentration , Nylons/metabolism , Response Elements/genetics
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