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1.
Cell Rep ; 42(5): 112472, 2023 05 30.
Article in English | MEDLINE | ID: mdl-37149862

ABSTRACT

Glioblastoma (GBM) recurrence originates from invasive margin cells that escape surgical debulking, but to what extent these cells resemble their bulk counterparts remains unclear. Here, we generated three immunocompetent somatic GBM mouse models, driven by subtype-associated mutations, to compare matched bulk and margin cells. We find that, regardless of mutations, tumors converge on common sets of neural-like cellular states. However, bulk and margin have distinct biology. Injury-like programs associated with immune infiltration dominate in the bulk, leading to the generation of lowly proliferative injured neural progenitor-like cells (iNPCs). iNPCs account for a significant proportion of dormant GBM cells and are induced by interferon signaling within T cell niches. In contrast, developmental-like trajectories are favored within the immune-cold margin microenvironment resulting in differentiation toward invasive astrocyte-like cells. These findings suggest that the regional tumor microenvironment dominantly controls GBM cell fate and biological vulnerabilities identified in the bulk may not extend to the margin residuum.


Subject(s)
Brain Neoplasms , Glioblastoma , Neural Stem Cells , Animals , Mice , Glioblastoma/genetics , Glioblastoma/pathology , Cell Differentiation , Tumor Microenvironment , Neural Stem Cells/pathology , Brain Neoplasms/genetics , Brain Neoplasms/pathology
2.
Front Immunol ; 14: 1113735, 2023.
Article in English | MEDLINE | ID: mdl-37114052

ABSTRACT

Huge progress has been made in understanding the biology of innate lymphoid cells (ILC) by adopting several well-known concepts in T cell biology. As such, flow cytometry gating strategies and markers, such as CD90, have been applied to indentify ILC. Here, we report that most non-NK intestinal ILC have a high expression of CD90 as expected, but surprisingly a sub-population of cells exhibit low or even no expression of this marker. CD90-negative and CD90-low CD127+ ILC were present amongst all ILC subsets in the gut. The frequency of CD90-negative and CD90-low CD127+ ILC was dependent on stimulatory cues in vitro and enhanced by dysbiosis in vivo. CD90-negative and CD90-low CD127+ ILC were a potential source of IL-13, IFNγ and IL-17A at steady state and upon dysbiosis- and dextran sulphate sodium-elicited colitis. Hence, this study reveals that, contrary to expectations, CD90 is not constitutively expressed by functional ILC in the gut.


Subject(s)
Colitis , Immunity, Innate , Humans , Colitis/metabolism , Cytokines/metabolism , Dysbiosis/metabolism , Lymphocytes/metabolism , Thy-1 Antigens/immunology
3.
Cancer Cell ; 39(11): 1497-1518.e11, 2021 11 08.
Article in English | MEDLINE | ID: mdl-34715028

ABSTRACT

ADAPTeR is a prospective, phase II study of nivolumab (anti-PD-1) in 15 treatment-naive patients (115 multiregion tumor samples) with metastatic clear cell renal cell carcinoma (ccRCC) aiming to understand the mechanism underpinning therapeutic response. Genomic analyses show no correlation between tumor molecular features and response, whereas ccRCC-specific human endogenous retrovirus expression indirectly correlates with clinical response. T cell receptor (TCR) analysis reveals a significantly higher number of expanded TCR clones pre-treatment in responders suggesting pre-existing immunity. Maintenance of highly similar clusters of TCRs post-treatment predict response, suggesting ongoing antigen engagement and survival of families of T cells likely recognizing the same antigens. In responders, nivolumab-bound CD8+ T cells are expanded and express GZMK/B. Our data suggest nivolumab drives both maintenance and replacement of previously expanded T cell clones, but only maintenance correlates with response. We hypothesize that maintenance and boosting of a pre-existing response is a key element of anti-PD-1 mode of action.


Subject(s)
Carcinoma, Renal Cell/drug therapy , Drug Resistance, Neoplasm , Immune Checkpoint Inhibitors/administration & dosage , Kidney Neoplasms/drug therapy , Nivolumab/administration & dosage , Receptors, Antigen, T-Cell/genetics , CD8-Positive T-Lymphocytes , Carcinoma, Renal Cell/genetics , Clinical Trials, Phase II as Topic , Endogenous Retroviruses/genetics , Gene Expression Profiling/methods , Genomics/methods , Humans , Immune Checkpoint Inhibitors/pharmacology , Kidney Neoplasms/genetics , Nivolumab/pharmacology , Prospective Studies , Sequence Analysis, RNA , Single-Cell Analysis , Tumor Escape , Tumor Microenvironment , Exome Sequencing
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