ABSTRACT
The Ugi reaction has been successfully applied to the synthesis of novel arginase inhibitors. In an effort to decrease conformational flexibility of the previously reported series of 2-amino-6-boronohexanoic acid (ABH) analogs 1, we designed and synthesized a series of compounds, 2, in which a piperidine ring is linked directly to a quaternary amino acid center. Further improvement of in vitro activity was achieved by adding two carbon bridge in the piperidine ring, that is, tropane analogs 11. These improvements in activity are rationalized by X-ray crystallography analysis, which show that the tropane ring nitrogen atom moves into direct contact with Asp202 (arginase II numbering). The synthetic routes described here enabled the design of novel arginase inhibitors with improved potency and markedly different physico-chemical properties compared to ABH. Compound 11c represents the most in vitro active arginase inhibitor reported to date.
Subject(s)
Amino Acids/chemistry , Amino Acids/pharmacology , Aminocaproates/chemistry , Aminocaproates/pharmacology , Arginase/antagonists & inhibitors , Boron Compounds/chemistry , Boron Compounds/pharmacology , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Amino Acids/chemical synthesis , Aminocaproates/chemical synthesis , Arginase/metabolism , Boron Compounds/chemical synthesis , Crystallography, X-Ray , Enzyme Inhibitors/chemical synthesis , Humans , Models, Molecular , Structure-Activity RelationshipABSTRACT
Recent efforts to identify treatments for myocardial ischemia reperfusion injury have resulted in the discovery of a novel series of highly potent α,α-disubstituted amino acid-based arginase inhibitors. The lead candidate, (R)-2-amino-6-borono-2-(2-(piperidin-1-yl)ethyl)hexanoic acid, compound 9, inhibits human arginases I and II with IC50s of 223 and 509 nM, respectively, and is active in a recombinant cellular assay overexpressing human arginase I (CHO cells). It is 28% orally bioavailable and significantly reduces the infarct size in a rat model of myocardial ischemia/reperfusion injury. Herein, we report the design, synthesis, and structure-activity relationships (SAR) for this novel series of inhibitors along with pharmacokinetic and in vivo efficacy data for compound 9 and X-ray crystallography data for selected lead compounds cocrystallized with arginases I and II.
Subject(s)
Amino Acids/chemistry , Amino Acids/pharmacology , Arginase/antagonists & inhibitors , Boron Compounds/chemistry , Boron Compounds/pharmacology , Caproates/chemistry , Caproates/pharmacology , Drug Discovery , Myocardial Reperfusion Injury/drug therapy , Amino Acids/pharmacokinetics , Amino Acids/therapeutic use , Animals , Arginase/chemistry , Boron Compounds/pharmacokinetics , Boron Compounds/therapeutic use , CHO Cells , Caproates/pharmacokinetics , Caproates/therapeutic use , Cricetinae , Cricetulus , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacokinetics , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/therapeutic use , Humans , Male , Models, Molecular , Protein Conformation , Rats , Structure-Activity RelationshipABSTRACT
A series of analogues of the peptide deformylase (PDF) inhibitor BB-3497 where the P3' amide bond was replaced with a ketone functionality is described. The in vitro antibacterial profiling of these compounds revealed that they demonstrate activity against pathogens associated with respiratory tract infections.
Subject(s)
Amidohydrolases/antagonists & inhibitors , Anti-Infective Agents/chemistry , Enzyme Inhibitors/chemistry , Respiratory Tract Infections/enzymology , Respiratory Tract Infections/microbiology , Amidohydrolases/metabolism , Anti-Infective Agents/pharmacology , Anti-Infective Agents/therapeutic use , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/therapeutic use , Haemophilus influenzae/drug effects , Haemophilus influenzae/enzymology , Microbial Sensitivity Tests/statistics & numerical data , Moraxella catarrhalis/drug effects , Moraxella catarrhalis/enzymology , Streptococcus pneumoniae/drug effects , Streptococcus pneumoniae/enzymologyABSTRACT
N-Acyl-beta-sultams are time dependent irreversible active site directed inhibitors of elastase. The rate of inactivation is first order with respect to beta-sultam concentration and the second order rate constants show a similar dependence on pH to that for the hydrolysis of a peptide substrate. Inactivation is due to the formation of a stable 1:1 enzyme inhibitor complex as a result of the active site serine being sulfonylated by the beta-sultam. Ring opening of the beta-sultam occurs by S-N fission in contrast to the C-N fission observed in the acylation of elastase by N-acylsulfonamides. Structure-activity effects are compared between sulfonylation of the enzyme and alkaline hydrolysis. Variation in 4-alkyl and N-substituted beta-sultams causes differences in the rates of inactivation by 4 orders of magnitude.
Subject(s)
Enzyme Inhibitors/pharmacology , Pancreatic Elastase/antagonists & inhibitors , Sulfonamides/chemistry , Sulfonamides/pharmacology , Binding Sites , Crystallography, X-Ray , Hydrogen-Ion Concentration , Hydrolysis , Kinetics , Magnetic Resonance Spectroscopy , Models, Chemical , Models, Molecular , Peptides/chemistry , Serine/chemistry , Structure-Activity Relationship , Time FactorsABSTRACT
Structural modifications to the peptide deformylase inhibitor BB-3497 are described. In this paper, we describe the initial SAR around this lead for modifications to the methylene spacer and the P1' side chain. Enzyme inhibition and antibacterial activity data revealed that the optimum distance between the N-formyl hydroxylamine metal binding group and the P1' side chain is one unsubstituted methylene unit. Additionally, lipophilic P1' side chains that closely mimic the methionine residue in the substrate provided compounds with the best microbiological profile.
Subject(s)
Amidohydrolases/antagonists & inhibitors , Anti-Bacterial Agents/chemical synthesis , Hydroxamic Acids/chemistry , Methane/analogs & derivatives , Anti-Bacterial Agents/pharmacology , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Hydrocarbons , Hydroxamic Acids/pharmacology , Hydroxylamine/chemistry , Inhibitory Concentration 50 , Metals/chemistry , Methane/chemistry , Microbial Sensitivity Tests , Molecular Mimicry , Oligopeptides/chemistry , Oligopeptides/pharmacology , Structure-Activity RelationshipABSTRACT
Structural modifications to the peptide deformylase inhibitor BB-3497 are described. In this paper, we describe the initial SAR around this lead for modifications to both the P2' and P3' side chains. Enzyme inhibition and antibacterial activity data revealed that a variety of substituents are tolerated at the P2' and P3' positions of the inhibitor backbone. The data from this study highlights the potential for modification at the P2' and P3' positions to optimise the physicochemical properties.
Subject(s)
Amidohydrolases/antagonists & inhibitors , Anti-Bacterial Agents/chemical synthesis , Enzyme Inhibitors/chemical synthesis , Amines/chemistry , Amino Acids/chemistry , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Enzyme Inhibitors/pharmacology , Escherichia coli/drug effects , Hydroxamic Acids/chemical synthesis , Metals/chemistry , Microbial Sensitivity Tests , Molecular Mimicry , Oligopeptides/chemical synthesis , Oligopeptides/chemistry , Oligopeptides/pharmacology , Structure-Activity RelationshipABSTRACT
A series of analogues of the potent peptide deformylase (PDF) inhibitor BB-3497 containing alternative metal binding groups was synthesised. Enzyme inhibition and antibacterial activity data for these compounds revealed that the bidentate hydroxamic acid and N-formyl hydroxylamine structural motifs represent the optimum chelating groups on the pseudopeptidic BB-3497 backbone.
Subject(s)
Amidohydrolases , Aminopeptidases/antagonists & inhibitors , Hydroxamic Acids/chemical synthesis , Hydroxamic Acids/pharmacology , Metals/chemistry , Bacteria/drug effects , Binding Sites , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Escherichia coli Proteins/antagonists & inhibitors , Inhibitory Concentration 50 , Microbial Sensitivity Tests , Structure-Activity RelationshipABSTRACT
CD30 is selectively expressed on the tumor cells of a variety of malignant disorders of the immune system and can therefore be used as a target for an anti-CD30 antibody-based immunotherapy. However, CD30 is cleaved at the cell surface by tumor necrosis factor-alpha converting enzyme (TACE). This metalloproteinase releases the soluble ectodomain of CD30 (sCD30), which is able to neutralize immunotherapeutic agents before these reach their target cells. Such constitutive CD30 cleavage is enhanced after binding of most anti-CD30 antibodies, leading to a downregulation of CD30 and an increase of sCD30 in the cell environment. Here, we demonstrate that CD30 shedding from the cell line Karpas 299 could effectively be blocked by the hydroxamic acid-based metalloproteinase inhibitors BB-3644 (IC50 = 180 nM), BB-2116 (IC50 = 230 nM), BB-94 (batimastat, IC50 = 230 nM) and BB-2516 (marimastat, IC50 = 1 microM). This inhibition reduced the concentration of sCD30 in the cell environment to the background level, prolonged the persistence of the anti-CD30 antibody Ki-3 on Karpas 299 cells and favored its internalization. Moreover, a nontoxic concentration of the inhibitor BB-3644 significantly increased the cytotoxic activity of the anti-CD30 ricin A-chain immunotoxin Ki-3.dgA towards the CD30(+) Hodgkin-derived cell line L540. Hence, the metalloproteinase inhibitor BB-3644 may be a promising compound to improve the immunotherapy of CD30(+) malignancies.
Subject(s)
Aminopyridines/pharmacology , Antibodies, Monoclonal/metabolism , Hydroxamic Acids/pharmacology , Immunotoxins/pharmacology , Ki-1 Antigen/immunology , Metalloendopeptidases/antagonists & inhibitors , Protease Inhibitors/pharmacology , Aminopyridines/chemistry , Antibodies, Monoclonal/immunology , Cell Survival , Dose-Response Relationship, Drug , Endocytosis , Humans , Hydroxamic Acids/chemistry , Ki-1 Antigen/metabolism , Kinetics , Lymphoma/metabolism , Lymphoma/therapy , Lymphoma, Large-Cell, Anaplastic/metabolism , Lymphoma, Large-Cell, Anaplastic/therapy , Protease Inhibitors/chemistry , Tumor Cells, CulturedABSTRACT
The ever-increasing resistance to current anti-infective drugs has become a major concern to the medical community. As a result, research efforts have been stepped up with the ultimate goal to provide new, more effective and safer antimicrobial treatments that will overcome the resistance problem. In this context, advances in molecular biology, automation and combinatorial chemistry will play a crucial role in the timely introduction of these products onto the market. How the application of combinatorial techniques can impact anti-infectives research will be reviewed using illustrative examples.
