ABSTRACT
Catalytic reduction of α,ß-unsaturated ketones with MgO has been found to improve selectivity to the desired unsaturated alcohol product. Using density functional calculations, we have studied the competitive hydrogenation of C=O and C=C bonds on Mg(100) employing two α,ß-unsaturated ketones: mesityl oxide (MO) and 2-cyclohexenone (CH), with isopropanol (IPA) as hydrogen source. For both ketones, MgO promotes the formation of a six-membered cyclic transition state for selective C=O reductions via a Meerwein-Ponndorf-Verley mechanism. Similar concerted mechanism is also possible for the C=C hydrogenation following an Eley-Rideal mechanism, in which the IPA interacts directly with the adsorbed ketone. The activation barriers are smaller for C=O reduction because this bond is activated on MgO(100). The selective C=O reduction is more favorable for CH than for MO due to the tendency of CH to be perpendicularly oriented. The desorption energies of the unsaturated alcohol are lower than the subsequent C=C reductions.
ABSTRACT
The sticking of H atoms onto dust grains and large hydrocarbon molecules has received considerable attention because it is thought to govern the formation of H2 and other H-containing molecules in the interstellar medium. Using the density functional theory (DFT) approximation, we have investigated the capacity of neutral hydrogenated polycyclic aromatic hydrocarbons (HnPAH) to catalyze simple hydrogenation reactions by acting as a source of atomic hydrogen. In particular, the interaction of OH and CO with H1-anthracene (singly hydrogenated) and H14-anthracene (fully hydrogenated) to form H2O and HCO was modeled following the Eley-Rideal mechanism. In this process, a hydrogen atom is abstracted from the HnPAH molecule forming the corresponding hydrogenated compound. The results were compared to the most known case of the HnPAH-catalyzed formation of H2. It was observed that whereas H2 is formed by overcoming activation barriers of approximately 0.02 and 0.10 eV with H1-anthracene and H14-anthracene, respectively, H2O is produced in a barrierless fashion with both hydrocarbon molecules. The production of HCO was found to be a highly unfavorable process (with activation barriers of 0.73 eV and 3.13 eV for H1- and H14-anthracene, respectively). Complementary calculations performed using the rest of the Hn-anthracene molecules (from 2 to 13 extra H atoms) showed that in all the cases the reaction with OH is barrierless as well. This efficient mechanism could therefore be a possible route for water formation in the cold interstellar medium.
ABSTRACT
In this work, we assess a previously advanced hypothesis that predicts the existence of ion channels in the capsid of small and non-enveloped icosahedral viruses. With this purpose we examine Triatoma Virus (TrV) as a case study. This virus has a stable capsid under highly acidic conditions but disassembles and releases the genome in alkaline environments. Our calculations range from a subtle sub-atomic proton interchange to the dismantling of a large-scale system representing several million of atoms. Our results provide structure-based explanations for the three roles played by the capsid to enable genome release. First, we observe, for the first time, the formation of a hydrophobic gate in the cavity along the five-fold axis of the wild-type virus capsid, which can be disrupted by an ion located in the pore. Second, the channel enables protons to permeate the capsid through a unidirectional Grotthuss-like mechanism, which is the most likely process through which the capsid senses pH. Finally, assuming that the proton leak promotes a charge imbalance in the interior of the capsid, we model an internal pressure that forces shell cracking using coarse-grained simulations. Although qualitatively, this last step could represent the mechanism of capsid opening that allows RNA release. All of our calculations are in agreement with current experimental data obtained using TrV and describe a cascade of events that could explain the destabilization and disassembly of similar icosahedral viruses.
