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1.
Unfallchirurg ; 124(8): 601-609, 2021 Aug.
Article in German | MEDLINE | ID: mdl-34254152

ABSTRACT

BACKGROUND: Traumatic aortic injuries (TAI) are rare injuries in blunt thoracic trauma, which have a high morbidity and mortality. Rapid and accurate diagnosis as well as the correct choice of treatment are elementary for patient survival. OBJECTIVE: Determination of the current standards for diagnostics of TAI in the acute trauma setting and evaluation of the current guidelines for treatment. MATERIAL AND METHODS: A literature search was carried out for articles describing diagnostics of TAI. Furthermore, the guidelines for treatment and follow-up of TAI were summarized. RESULTS: Despite the low specificity conventional chest X­ray is still named in the literature as initial diagnostic procedure. Primarily, computed tomography (CT) should follow as the method of choice for diagnostics and treatment stratification due to the high sensitivity and specificity. Thoracic endovascular aortic repair (TEVAR) is recommended by all guidelines as first line treatment of higher grades of TAI (grades II-IV) and has replaced open surgery in most cases. CONCLUSION: After rapid diagnosis and classification of TAI with CT, in most cases TEVAR has become the preferred treatment over open surgery.


Subject(s)
Endovascular Procedures , Thoracic Injuries , Vascular System Injuries , Wounds, Nonpenetrating , Aorta, Thoracic/diagnostic imaging , Aorta, Thoracic/injuries , Aorta, Thoracic/surgery , Humans , Retrospective Studies , Thoracic Injuries/diagnostic imaging , Thoracic Injuries/surgery , Treatment Outcome , Vascular System Injuries/diagnostic imaging , Vascular System Injuries/surgery , Wounds, Nonpenetrating/diagnostic imaging , Wounds, Nonpenetrating/therapy
2.
Sci Adv ; 5(10): eaax6497, 2019 10.
Article in English | MEDLINE | ID: mdl-31663026

ABSTRACT

Tc toxins use a syringe-like mechanism to penetrate the membrane and translocate toxic enzymes into the host cytosol. They are composed of three components: TcA, TcB, and TcC. Low-resolution structures of TcAs from different bacteria suggest a considerable difference in their architecture and possibly in their mechanism of action. Here, we present high-resolution structures of five TcAs from insect and human pathogens, which show a similar overall composition and domain organization. Essential structural features, including a trefoil protein knot, are present in all TcAs, suggesting a common mechanism of action. All TcAs form functional pores and can be combined with TcB-TcC subunits from other species to form active chimeric holotoxins. We identified a conserved ionic pair that stabilizes the shell, likely operating as a strong latch that only springs open after destabilization of other regions. Our results provide new insights into the architecture and mechanism of the Tc toxin family.


Subject(s)
Bacteria/metabolism , Bacterial Proteins/metabolism , Bacterial Toxins/metabolism , Glycosides/metabolism , Insecta/microbiology , Triterpenes/metabolism , Animals , Cytoplasm/microbiology , Humans
3.
Environ Mol Mutagen ; 58(5): 264-283, 2017 06.
Article in English | MEDLINE | ID: mdl-27650663

ABSTRACT

For several decades, regulatory testing schemes for genetic damage have been standardized where the tests being utilized examined mutations and structural and numerical chromosomal damage. This has served the genetic toxicity community well when most of the substances being tested were amenable to such assays. The outcome from this testing is usually a dichotomous (yes/no) evaluation of test results, and in many instances, the information is only used to determine whether a substance has carcinogenic potential or not. Over the same time period, mechanisms and modes of action (MOAs) that elucidate a wider range of genomic damage involved in many adverse health outcomes have been recognized. In addition, a paradigm shift in applied genetic toxicology is moving the field toward a more quantitative dose-response analysis and point-of-departure (PoD) determination with a focus on risks to exposed humans. This is directing emphasis on genomic damage that is likely to induce changes associated with a variety of adverse health outcomes. This paradigm shift is moving the testing emphasis for genetic damage from a hazard identification only evaluation to a more comprehensive risk assessment approach that provides more insightful information for decision makers regarding the potential risk of genetic damage to exposed humans. To enable this broader context for examining genetic damage, a next generation testing strategy needs to take into account a broader, more flexible approach to testing, and ultimately modeling, of genomic damage as it relates to human exposure. This is consistent with the larger risk assessment context being used in regulatory decision making. As presented here, this flexible approach for examining genomic damage focuses on testing for relevant genomic effects that can be, as best as possible, associated with an adverse health effect. The most desired linkage for risk to humans would be changes in loci associated with human diseases, whether in somatic or germ cells. The outline of a flexible approach and associated considerations are presented in a series of nine steps, some of which can occur in parallel, which was developed through a collaborative effort by leading genetic toxicologists from academia, government, and industry through the International Life Sciences Institute (ILSI) Health and Environmental Sciences Institute (HESI) Genetic Toxicology Technical Committee (GTTC). The ultimate goal is to provide quantitative data to model the potential risk levels of substances, which induce genomic damage contributing to human adverse health outcomes. Any good risk assessment begins with asking the appropriate risk management questions in a planning and scoping effort. This step sets up the problem to be addressed (e.g., broadly, does genomic damage need to be addressed, and if so, how to proceed). The next two steps assemble what is known about the problem by building a knowledge base about the substance of concern and developing a rational biological argument for why testing for genomic damage is needed or not. By focusing on the risk management problem and potential genomic damage of concern, the next step of assay(s) selection takes place. The work-up of the problem during the earlier steps provides the insight to which assays would most likely produce the most meaningful data. This discussion does not detail the wide range of genomic damage tests available, but points to types of testing systems that can be very useful. Once the assays are performed and analyzed, the relevant data sets are selected for modeling potential risk. From this point on, the data are evaluated and modeled as they are for any other toxicology endpoint. Any observed genomic damage/effects (or genetic event(s)) can be modeled via a dose-response analysis and determination of an estimated PoD. When a quantitative risk analysis is needed for decision making, a parallel exposure assessment effort is performed (exposure assessment is not detailed here as this is not the focus of this discussion; guidelines for this assessment exist elsewhere). Then the PoD for genomic damage is used with the exposure information to develop risk estimations (e.g., using reference dose (RfD), margin of exposure (MOE) approaches) in a risk characterization and presented to risk managers for informing decision making. This approach is applicable now for incorporating genomic damage results into the decision-making process for assessing potential adverse outcomes in chemically exposed humans and is consistent with the ILSI HESI Risk Assessment in the 21st Century (RISK21) roadmap. This applies to any substance to which humans are exposed, including pharmaceuticals, agricultural products, food additives, and other chemicals. It is time for regulatory bodies to incorporate the broader knowledge and insights provided by genomic damage results into the assessments of risk to more fully understand the potential of adverse outcomes in chemically exposed humans, thus improving the assessment of risk due to genomic damage. The historical use of genomic damage data as a yes/no gateway for possible cancer risk has been too narrowly focused in risk assessment. The recent advances in assaying for and understanding genomic damage, including eventually epigenetic alterations, obviously add a greater wealth of information for determining potential risk to humans. Regulatory bodies need to embrace this paradigm shift from hazard identification to quantitative analysis and to incorporate the wider range of genomic damage in their assessments of risk to humans. The quantitative analyses and methodologies discussed here can be readily applied to genomic damage testing results now. Indeed, with the passage of the recent update to the Toxic Substances Control Act (TSCA) in the US, the new generation testing strategy for genomic damage described here provides a regulatory agency (here the US Environmental Protection Agency (EPA), but suitable for others) a golden opportunity to reexamine the way it addresses risk-based genomic damage testing (including hazard identification and exposure). Environ. Mol. Mutagen. 58:264-283, 2017. © 2016 The Authors. Environmental and Molecular Mutagenesis Published by Wiley Periodicals, Inc.


Subject(s)
Genomics/methods , Mutagenicity Tests/trends , Animals , Environmental Health , Humans , Models, Theoretical , Mutagenicity Tests/standards , Mutagens/toxicity , Risk Assessment
4.
Biochim Biophys Acta ; 1858(3): 512-25, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26278641

ABSTRACT

Clostridial binary toxins (Clostridium perfringens Iota toxin, Clostridium difficile transferase, Clostridium spiroforme toxin, Clostridium botulinum C2 toxin) as Bacillus binary toxins, including Bacillus anthracis toxins consist of two independent proteins, one being the binding component which mediates the internalization into cell of the intracellularly active component. Clostridial binary toxins induce actin cytoskeleton disorganization through mono-ADP-ribosylation of globular actin and are responsible for enteric diseases. Clostridial and Bacillus binary toxins share structurally and functionally related binding components which recognize specific cell receptors, oligomerize, form pores in endocytic vesicle membrane, and mediate the transport of the enzymatic component into the cytosol. Binding components retain the global structure of pore-forming toxins (PFTs) from the cholesterol-dependent cytotoxin family such as perfringolysin. However, their pore-forming activity notably that of clostridial binding components is more related to that of heptameric PFT family including aerolysin and C. perfringens epsilon toxin. This review focuses upon pore-forming activity of clostridial binary toxins compared to other related PFTs. This article is part of a Special Issue entitled: Pore-Forming Toxins edited by Mauro Dalla Serra and Franco Gambale.


Subject(s)
ADP Ribose Transferases , Bacterial Toxins , Cell Membrane , Clostridium/enzymology , Pore Forming Cytotoxic Proteins , Protein Multimerization , ADP Ribose Transferases/chemistry , ADP Ribose Transferases/metabolism , Animals , Bacterial Toxins/chemistry , Bacterial Toxins/metabolism , Cell Membrane/chemistry , Cell Membrane/metabolism , Humans , Pore Forming Cytotoxic Proteins/chemistry , Pore Forming Cytotoxic Proteins/metabolism
5.
Cancer Chemother Pharmacol ; 74(6): 1307-19, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25297989

ABSTRACT

PURPOSE: This study assessed whether a cycle of "routine" therapeutic drug monitoring (TDM) for imatinib dosage individualization, targeting an imatinib trough plasma concentration (C min) of 1,000 ng/ml (tolerance: 750-1,500 ng/ml), could improve clinical outcomes in chronic myelogenous leukemia (CML) patients, compared with TDM use only in case of problems ("rescue" TDM). METHODS: Imatinib concentration monitoring evaluation was a multicenter randomized controlled trial including adult patients in chronic or accelerated phase CML receiving imatinib since less than 5 years. Patients were allocated 1:1 to "routine TDM" or "rescue TDM." The primary endpoint was a combined outcome (failure- and toxicity-free survival with continuation on imatinib) over 1-year follow-up, analyzed in intention-to-treat (ISRCTN31181395). RESULTS: Among 56 patients (55 evaluable), 14/27 (52 %) receiving "routine TDM" remained event-free versus 16/28 (57 %) "rescue TDM" controls (P = 0.69). In the "routine TDM" arm, dosage recommendations were correctly adopted in 14 patients (median C min: 895 ng/ml), who had fewer unfavorable events (28 %) than the 13 not receiving the advised dosage (77 %; P = 0.03; median C min: 648 ng/ml). CONCLUSIONS: This first target concentration intervention trial could not formally demonstrate a benefit of "routine TDM" because of small patient number and surprisingly limited prescriber's adherence to dosage recommendations. Favorable outcomes were, however, found in patients actually elected for target dosing. This study thus shows first prospective indication for TDM being a useful tool to guide drug dosage and shift decisions. The study design and analysis provide an interesting paradigm for future randomized TDM trials on targeted anticancer agents.


Subject(s)
Antineoplastic Agents/administration & dosage , Benzamides/administration & dosage , Drug Monitoring/methods , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/drug therapy , Piperazines/administration & dosage , Pyrimidines/administration & dosage , Adult , Aged , Antineoplastic Agents/pharmacokinetics , Antineoplastic Agents/therapeutic use , Benzamides/pharmacokinetics , Benzamides/therapeutic use , Dose-Response Relationship, Drug , Female , Follow-Up Studies , Humans , Imatinib Mesylate , Leukemia, Myelogenous, Chronic, BCR-ABL Positive/pathology , Male , Middle Aged , Piperazines/pharmacokinetics , Piperazines/therapeutic use , Precision Medicine/methods , Prospective Studies , Pyrimidines/pharmacokinetics , Pyrimidines/therapeutic use , Treatment Outcome
7.
Bone Marrow Transplant ; 49(1): 62-5, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24056739

ABSTRACT

A considerable number of patients undergoing allogeneic hematopoietic SCT (HSCT) develop post-transplant complications requiring intensive care unit (ICU) treatment. Whereas the indications and the outcome of ICU admission are well known, the risk factors leading to ICU admission are less well understood. We performed a retrospective single-center study on 250 consecutive HSCT patients analyzing the indications, risk factors and outcome of ICU admission. Of these 250 patients, 33 (13%) were admitted to the ICU. The most common indications for admission to the ICU were pulmonary complications (11, 33%), sepsis (8, 24%), neurological disorders (6, 18%) and cardiovascular problems (2, 6%). Acute GvHD and HLA mismatch were the only significant risk factors for ICU admission in multivariate analysis. Among patients admitted to the ICU, the number of organ failures correlated negatively with survival. Twenty-one (64%) patients died during the ICU stay and the 6-month mortality was 85% (27 out of 33). SAPS II score underestimated the mortality rate. In conclusion, acute GvHD and HLA mismatch were identified as risk factors for ICU admission following allogeneic HSCT. Both, short- and long-term survival of patients admitted to the ICU remains dismal and depends on the number of organ failures.


Subject(s)
Critical Care/methods , Hematopoietic Stem Cell Transplantation/methods , Intensive Care Units/statistics & numerical data , Leukemia/therapy , Lymphoma/therapy , Adolescent , Adult , Aged , Disease Progression , Female , Hematopoietic Stem Cell Transplantation/adverse effects , Humans , Leukemia/mortality , Lymphoma/mortality , Male , Middle Aged , Recurrence , Respiration Disorders/etiology , Respiration Disorders/mortality , Retrospective Studies , Risk Factors , Sepsis/etiology , Sepsis/mortality , Switzerland , Transplantation Conditioning , Transplantation, Homologous , Treatment Outcome , Young Adult
8.
Internist (Berl) ; 54(8): 1011-5, 2013 Aug.
Article in German | MEDLINE | ID: mdl-23836253

ABSTRACT

Multicentric Castleman's disease (MCD) is a rare polyclonal lymphoproliferative disorder that is typically accompanied by an overproduction of circulating cytokines (mainly interleukin-6). We here report the case of a 40-year-old HIV-negative woman with pulmonary manifestation of MCD. There is no standard treatment for MCD. In our patient, various treatment courses with immunomodulatory drugs were unsuccessful. Finally, treatment with the interleukin-6 receptor antibody tocilizumab has resulted in continual clinical improvement over the last 5 years.


Subject(s)
Antibodies, Monoclonal, Humanized/therapeutic use , Castleman Disease/diagnosis , Castleman Disease/drug therapy , Cough/diagnosis , Cough/drug therapy , Dyspnea/diagnosis , Dyspnea/drug therapy , Adult , Diagnosis, Differential , Female , Humans , Treatment Outcome
9.
Anaesthesist ; 61(10): 901-5, 2012 Oct.
Article in German | MEDLINE | ID: mdl-22983449

ABSTRACT

Trauma in pregnancy is infrequent and a systematic primary strategy constitutes a real challenge for the interdisciplinary team. With a high fetal mortality rate and a substantial maternal mortality rate traumatic placental abruption is a severe emergency which every anesthetist should be aware of. After hemodynamic stabilization of the mother and control of the viability of the fetus the therapy of traumatic placental abruption consists mostly of an immediate caesarean section. Coagulopathy by depletion of coagulation factors as well as disseminated intravascular coagulation (DIC) have to be expected and consequently a massive blood loss must be anticipated. Thrombelastography provides assistance for fast differential diagnosis and goal-directed treatment of the disturbed sections of the coagulation cascade.


Subject(s)
Abruptio Placentae/therapy , Disseminated Intravascular Coagulation/therapy , Wounds and Injuries/complications , Abruptio Placentae/etiology , Adult , Blood Coagulation/physiology , Blood Coagulation Tests , Cesarean Section , Disseminated Intravascular Coagulation/etiology , Disseminated Intravascular Coagulation/physiopathology , Female , Hemodynamics , Hemorrhage/complications , Humans , Perioperative Care , Pregnancy , Preoperative Care , Thrombelastography
10.
Ther Umsch ; 69(9): 543-8, 2012 Sep.
Article in German | MEDLINE | ID: mdl-22923358

ABSTRACT

Stroke is heterogenous in its symptoms, which are also caused by various pathologies. Clinically the causing mechanism (bleeding or ischemia) of a new onset of neurological deficits can not reliably be distinguished. However, ischemia is four times more frequent than a bleeding causing neurological symptoms. Modern imaging technologies (computed assisted tomography or magnetic resonace imaging) and interventional techniques are a mainstay in diagnostics and management of acute onset of neurological symptoms. They can reliably distinguish between bleeding and stroke, especially taking newest technologies, such as perfusion studies and angiographies, into account. Neuroradiology with its interventional options has nowadays furthermore become an important tool in strokes and offers a local maneuver to retrieve the clotting pathology and even opens the therapeutic window for a delayed start of the therapy since symptom's onset beyong the conventional 4.5 hours window. Also risks of a therapy and which therapy option should be used can immediately be assessed.


Subject(s)
Cerebral Infarction/diagnosis , Image Enhancement , Image Interpretation, Computer-Assisted , Neuroimaging/methods , Stroke/diagnosis , Cerebral Angiography/methods , Cerebral Infarction/drug therapy , Diffusion Magnetic Resonance Imaging , Humans , Magnetic Resonance Angiography/methods , Magnetic Resonance Imaging/methods , Sensitivity and Specificity , Stroke/drug therapy , Thrombolytic Therapy , Tomography, X-Ray Computed/methods
11.
Clin Pharmacol Ther ; 91(3): 529-34, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22258468

ABSTRACT

The ability to predict clinical safety based on chemical structures is becoming an increasingly important part of regulatory decision making. (Quantitative) structure-activity relationship ((Q)SAR) models are currently used to evaluate late-arising safety concerns and possible nonclinical effects of a drug and its related compounds when adequate safety data are absent or equivocal. Regulatory use will likely increase with the standardization of analytical approaches, more complete and reliable data collection methods, and a better understanding of toxicity mechanisms.


Subject(s)
Drug-Related Side Effects and Adverse Reactions , Quantitative Structure-Activity Relationship , Risk Assessment/methods , Decision Making , Drug Industry/methods , Drug and Narcotic Control/methods , Humans , Models, Theoretical
12.
Clin Nephrol ; 76(6): 470-4, 2011 Dec.
Article in English | MEDLINE | ID: mdl-22105450

ABSTRACT

The chronic kidney disease (CKD) population has a high incidence of sleep disorders, including sleep apnea (SA) and periodic limb movements in sleep (PLMS). SA and PLMS often occur concurrently and may predict mortality in the end stage renal disease (ESRD) population. In this study, we investigated whether sleep fragmentation secondary to SA masks the underlying frequency or severity of PLMS in 16 patients with CKD, dialysis and not-on-dialysis patients (CKD-ND), and if successful treatment of SA with continuous positive airway pressure (CPAP) results in the increased appearance of PLMS. All subjects had polysomnography (PSG) diagnosed SA. The mean apnea-hypopnea index (AHI) at baseline and with CPAP treatment was 49.8 ± 25.6/h and 5.2 ± 9.1/h, respectively. With successful treatment of SA with CPAP, PLMS index (PLMSI) increased 237.7% from baseline of 13.8 ± 23.8/h to 32.8 ± 33.7/h with CPAP treatment (p = 0.019). Arousing PLMS index (APLMSI) also increased 191.5% from mean baseline of 8.2 ± 18.2/h to 15.7 ± 18.5/h with CPAP treatment (p = 0.026). PLMS occur during uninterrupted NREM sleep. SA may mask the underlying incidence and severity of PLMS in CKD patients by disrupting NREM sleep. PLMS more than doubled during successful treatment of SA. Therefore, despite successful treatment of SA with CPAP, sleep deprivation may persist due to clinical manifestation of underlying PLMS in patients with CKD. The actual underlying prevalence and severity of CKD-associated PLMS are likely higher than appreciated and are suppressed by SA in the CKD population.


Subject(s)
Continuous Positive Airway Pressure , Kidney Diseases/complications , Sleep Wake Disorders/etiology , Adult , Aged , Aged, 80 and over , Chronic Disease , Female , Humans , Male , Middle Aged , Muscle Contraction , Sleep Apnea Syndromes/physiopathology , Sleep Apnea Syndromes/therapy , Sleep Wake Disorders/epidemiology
13.
Environ Mol Mutagen ; 52(5): 339-54, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21538556

ABSTRACT

A symposium at the 40th anniversary of the Environmental Mutagen Society, held from October 24-28, 2009 in St. Louis, MO, surveyed the current status and future directions of genetic toxicology. This article summarizes the presentations and provides a perspective on the future. An abbreviated history is presented, highlighting the current standard battery of genotoxicity assays and persistent challenges. Application of computational toxicology to safety testing within a regulatory setting is discussed as a means for reducing the need for animal testing and human clinical trials, and current approaches and applications of in silico genotoxicity screening approaches across the pharmaceutical industry were surveyed and are reported here. The expanded use of toxicogenomics to illuminate mechanisms and bridge genotoxicity and carcinogenicity, and new public efforts to use high-throughput screening technologies to address lack of toxicity evaluation for the backlog of thousands of industrial chemicals in the environment are detailed. The Tox21 project involves coordinated efforts of four U.S. Government regulatory/research entities to use new and innovative assays to characterize key steps in toxicity pathways, including genotoxic and nongenotoxic mechanisms for carcinogenesis. Progress to date, highlighting preliminary test results from the National Toxicology Program is summarized. Finally, an overview is presented of ToxCast™, a related research program of the U.S. Environmental Protection Agency, using a broad array of high throughput and high content technologies for toxicity profiling of environmental chemicals, and computational toxicology modeling. Progress and challenges, including the pressing need to incorporate metabolic activation capability, are summarized.


Subject(s)
Environmental Monitoring/methods , Toxicogenetics/methods , Models, Theoretical , Toxicogenetics/trends , United States , United States Environmental Protection Agency
14.
Environ Mol Mutagen ; 52(3): 205-23, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20740635

ABSTRACT

The International Life Sciences Institute (ILSI) Health and Environmental Sciences Institute (HESI) Project Committee on the Relevance and Follow-up of Positive Results in In Vitro Genetic Toxicity (IVGT) Testing established an Emerging Technologies and New Strategies Workgroup to review the current State of the Art in genetic toxicology testing. The aim of the workgroup was to identify promising technologies that will improve genotoxicity testing and assessment of in vivo hazard and risk, and that have the potential to help meet the objectives of the IVGT. As part of this initiative, HESI convened a workshop in Washington, DC in May 2008 to discuss mature, maturing, and emerging technologies in genetic toxicology. This article collates the abstracts of the New and Emerging Technologies Workshop together with some additional technologies subsequently considered by the workgroup. Each abstract (available in the online version of the article) includes a section addressed specifically to the strengths, weaknesses, opportunities, and threats associated with the respective technology. Importantly, an overview of the technologies and an indication of how their use might be aligned with the objectives of IVGT are presented. In particular, consideration was given with regard to follow-up testing of positive results in the standard IVGT tests (i.e., Salmonella Ames test, chromosome aberration assay, and mouse lymphoma assay) to add weight of evidence and/or provide mechanism of action for improved genetic toxicity risk assessments in humans.


Subject(s)
International Cooperation , Mutagenicity Tests/methods , Mutagens/toxicity , Animals , Consensus Development Conferences as Topic , Humans , Mutagenicity Tests/trends , Risk Assessment , Technology
17.
Mol Nutr Food Res ; 54(2): 186-94, 2010 Feb.
Article in English | MEDLINE | ID: mdl-20024931

ABSTRACT

Computational toxicology employing quantitative structure-activity relationship (QSAR) modeling is an evidence-based predictive method being evaluated by regulatory agencies for risk assessment and scientific decision support for toxicological endpoints of interest such as rodent carcinogenicity. Computational toxicology is being tested for its usefulness to support the safety assessment of drug-related substances (e.g. active pharmaceutical ingredients, metabolites, impurities), indirect food additives, and other applied uses of value for protecting public health including safety assessment of environmental chemicals. The specific use of QSAR as a chemoinformatic tool for estimating the rodent carcinogenic potential of phytochemicals present in botanicals, herbs, and natural dietary sources is investigated here by an external validation study, which is the most stringent scientific method of measuring predictive performance. The external validation statistics for predicting rodent carcinogenicity of 43 phytochemicals, using two computational software programs evaluated at the FDA, are discussed. One software program showed very good performance for predicting non-carcinogens (high specificity), but both exhibited poor performance in predicting carcinogens (sensitivity), which is consistent with the design of the models. When predictions were considered in combination with each other rather than based on any one software, the performance for sensitivity was enhanced, However, Chi-square values indicated that the overall predictive performance decreases when using the two computational programs with this particular data set. This study suggests that complementary multiple computational toxicology software need to be carefully selected to improve global QSAR predictions for this complex toxicological endpoint.


Subject(s)
Carcinogens/toxicity , Computational Biology/methods , Expert Systems , Plant Preparations/chemistry , Plants, Edible/chemistry , Plants, Medicinal/chemistry , Toxicology/methods , Animals , Carcinogens/chemistry , Databases, Factual , Female , Male , Mice , Models, Biological , Quantitative Structure-Activity Relationship , Rats , Risk Assessment/methods , Software , Statistics as Topic , Toxicity Tests , United States , United States Food and Drug Administration
18.
Regul Toxicol Pharmacol ; 54(1): 1-22, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19422096

ABSTRACT

The Informatics and Computational Safety Analysis Staff at the US FDA's Center for Drug Evaluation and Research has created a database of pharmaceutical adverse effects (AEs) linked to pharmaceutical chemical structures and estimated population exposures. The database is being used to develop quantitative structure-activity relationship (QSAR) models for the prediction of drug-induced liver and renal injury, as well as to identify relationships among AEs. The post-market observations contained in the database were obtained from FDA's Spontaneous Reporting System (SRS) and the Adverse Event Reporting System (AERS) accessed through Elsevier PharmaPendium software. The database contains approximately 3100 unique pharmaceutical compounds and 9685 AE endpoints. To account for variations in AE reports due to different patient populations and exposures for each drug, a proportional reporting ratio (PRR) was used. The PRR was applied to all AEs to identify chemicals that could be scored as positive in the training datasets of QSAR models. Additionally, toxicologically similar AEs were grouped into clusters based upon both biological effects and statistical correlation. This clustering created a weight of evidence paradigm for the identification of compounds most likely to cause human harm based upon findings in multiple related AE endpoints.


Subject(s)
Adverse Drug Reaction Reporting Systems , Biliary Tract Diseases/chemically induced , Chemical and Drug Induced Liver Injury/etiology , Databases, Factual , Drug-Related Side Effects and Adverse Reactions , Product Surveillance, Postmarketing , Urologic Diseases/chemically induced , Cluster Analysis , Endpoint Determination , Humans , Models, Biological , Pharmaceutical Preparations/administration & dosage , Pharmaceutical Preparations/chemistry , Quantitative Structure-Activity Relationship , United States , United States Food and Drug Administration
19.
Regul Toxicol Pharmacol ; 54(1): 23-42, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19422098

ABSTRACT

This report describes the development of quantitative structure-activity relationship (QSAR) models for predicting rare drug-induced liver and urinary tract injury in humans based upon a database of post-marketing adverse effects (AEs) linked to approximately 1600 chemical structures. The models are based upon estimated population exposure using AE proportional reporting ratios. Models were constructed for 5 types of liver injury (liver enzyme disorders, cytotoxic injury, cholestasis and jaundice, bile duct disorders, gall bladder disorders) and 6 types of urinary tract injury (acute renal disorders, nephropathies, bladder disorders, kidney function tests, blood in urine, urolithiases). Identical training data sets were configured for 4 QSAR programs (MC4PC, MDL-QSAR, BioEpisteme, and Predictive Data Miner). Model performance was optimized and was shown to be affected by the AE scoring method and the ratio of the number of active to inactive drugs. The best QSAR models exhibited an overall average 92.4% coverage, 86.5% specificity and 39.3% sensitivity. The 4 QSAR programs were demonstrated to be complementary and enhanced performance was obtained by combining predictions from 2 programs (average 78.4% specificity, 56.2% sensitivity). Consensus predictions resulted in better performance as judged by both internal and external validation experiments.


Subject(s)
Adverse Drug Reaction Reporting Systems , Biliary Tract Diseases/diagnosis , Chemical and Drug Induced Liver Injury/diagnosis , Drug-Related Side Effects and Adverse Reactions , Pharmaceutical Preparations/chemistry , Urologic Diseases/diagnosis , Biliary Tract Diseases/chemically induced , Chemical and Drug Induced Liver Injury/etiology , Cluster Analysis , Databases, Factual , Early Diagnosis , Endpoint Determination , Humans , Models, Biological , Pharmaceutical Preparations/administration & dosage , Product Surveillance, Postmarketing , Quantitative Structure-Activity Relationship , Software , United States , United States Food and Drug Administration , Urologic Diseases/chemically induced
20.
Regul Toxicol Pharmacol ; 54(1): 43-65, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19422100

ABSTRACT

This report describes an in silico methodology to predict off-target pharmacologic activities and plausible mechanisms of action (MOAs) associated with serious and unexpected hepatobiliary and urinary tract adverse effects in human patients. The investigation used a database of 8,316,673 adverse event (AE) reports observed after drugs had been marketed and AEs noted in the published literature that were linked to 2124 chemical structures and 1851 approved clinical indications. The Integrity database of drug patent and literature studies was used to find pharmacologic targets and proposed clinical indications. BioEpisteme QSAR software was used to predict possible molecular targets of drug molecules and Derek for Windows expert system software to predict chemical structural alerts and plausible MOAs for the AEs. AEs were clustered into five types of liver injury: liver enzyme disorders, cytotoxic injury, cholestasis and jaundice, bile duct disorders, and gall bladder disorders, and six types of urinary tract injury: acute renal disorders, nephropathies, bladder disorders, kidney function tests, blood in urine, and urolithiasis. Results showed that drug-related AEs were highly correlated with: (1) known drug class warnings, (2) predicted off-target activities of the drugs, and (3) a specific subset of clinical indications for which the drug may or may not have been prescribed.


Subject(s)
Adverse Drug Reaction Reporting Systems/organization & administration , Biliary Tract Diseases/chemically induced , Chemical and Drug Induced Liver Injury/etiology , Drug-Related Side Effects and Adverse Reactions , Models, Biological , Urologic Diseases/chemically induced , Databases, Factual , Drug Labeling , Endpoint Determination , Humans , Pharmaceutical Preparations/administration & dosage , Pharmaceutical Preparations/chemistry , Product Surveillance, Postmarketing , Quantitative Structure-Activity Relationship , United States , United States Food and Drug Administration
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