Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 23
Filter
Add more filters










Publication year range
1.
ACS Appl Mater Interfaces ; 16(5): 5965-5976, 2024 Feb 07.
Article in English | MEDLINE | ID: mdl-38263906

ABSTRACT

The development of low-cost, efficient catalysts for electrocatalytic water splitting to generate green hydrogen is a hot topic among researchers. Herein, we have developed a highly efficient heterostructure of CoCr-LDH on NiO on nickel foam (NF) for the first time. The preparation strategy follows the simple annealing of a cleaned NF without using any Ni salt precursor, followed by the growth of CoCr-LDH nanosheets over the surface-oxidized NF. The CoCr-LDH/NiO/NF catalyst shows excellent electrocatalytic activity and stability toward oxygen evolution reaction (OER) and hydrogen evolution reaction (HER) in a 1 M KOH solution. For OER, only 253 mV and for HER, only 185 mV overpotentials are required to attain a 50 mA cm-2 current density. Also, the long-term stability of both the OER and HER for 60 h proves its robustness. The turnover frequency value for the OER increased 1.85 times after the heterostructure formation compared to bare CoCr-LDH. The calculated Faradaic efficiency values of 97.4 and 94.75% for the OER and HER revealed the high intrinsic activity of the heterostructure. Moreover, the heterostructure only needs 1.57 V of cell voltage when acting as both the anode and the cathode to achieve a 10 mA cm-2 current density. The long-term stability of 60 h for the total water-splitting process proves its excellent performance. Several systematic pre- and post-experiment characterizations prove its durable nature. These excellent OER and HER activities and stabilities are attributed to the surface-modified electronic structure and thin nanosheet-like surface morphology of the heterostructure. The thin, wide, and modified surface of the catalyst facilitates the diffusion of ions (reactants) and gas molecules (products) at the electrode/electrolyte interface. Furthermore, electron transfer from n-type CoCr-LDH to p-type NiO results in enhanced electronic conductivity. This study demonstates the effective design of a self-supported heterostructure with minimal synthetic steps to generate a bifunctional electrocatalyst for water splitting, contributing to the greater cause of green hydrogen economy.

2.
Inorg Chem ; 62(51): 21265-21276, 2023 Dec 25.
Article in English | MEDLINE | ID: mdl-38073275

ABSTRACT

Electrocatalytic water splitting to an anodic oxygen evolution reaction (OER) and a cathodic hydrogen evolution reaction (HER) is believed to be the most important application for sustainable hydrogen generation. Being a four-electron, four-proton transfer process, the OER plays the main obstacle for the same. Therefore, designing an effective electrocatalyst to minimize the activation energy barrier for the OER is a research topic of prime importance. The metal-organic framework (MOF) with a highly porous network is considered an appropriate candidate for the OER in alkaline conditions. Apart from several MOFs, the bimetallic one has an advantageous electrocatalytic performance due to the synergistic electronic interaction between two metal ions. However, most bimetallic MOFs have an obstacle to electrocatalytic application due to their low conductive nature, and therefore, they possess a barrier for charge transfer kinetics at the interface. Surface functionalization via various nanoparticles (NPs) is believed to be the most effective strategy for nullifying the conductive issue. In this work, we have designed a CoNi-based bimetallic MOF that was surface-functionalized by Au NPs (Au@CoNi-Bpy-BTC) for the OER under alkaline conditions. Au@CoNi-Bpy-BTC required an overpotential of just 330 mV, which is 56 mV lower as compared to the pristine MOF. Impedance analysis confirms an improved conductivity and charge transfer at the interface, where Au@CoNi-Bpy-BTC possesses a lower Rct value than CoNi-Bpy-BTC materials. Moreover, the Au-decorated MOF shows an 8.5 times increase in the TOF value compared to the pristine MOF. Therefore, this noble strategy toward the surface functionalization of MOFs via noble metal NPs is believed to be the most effective strategy for developing effective electrocatalysts for electrocatalytic application in energy-related fields. Overall, this report displays an exceptional correlation between the decorated NPs over the MOF surface, which can regulate the OER activity, as confirmed by experimental analysis.

3.
Biochemistry ; 62(11): 1631-1642, 2023 06 06.
Article in English | MEDLINE | ID: mdl-37167199

ABSTRACT

An increase in phosphorylation of the Tau protein is associated with Alzheimer's disease (AD) progression through unclear molecular mechanisms. In general, phosphorylation modifies the interaction of intrinsically disordered proteins, such as Tau, with other proteins; however, elucidating the structural basis of this regulation mechanism remains challenging. The bridging integrator-1 gene is an AD genetic determinant whose gene product, BIN1, directly interacts with Tau. The proline-rich motif recognized within a Tau(210-240) peptide by the SH3 domain of BIN1 (BIN1 SH3) is defined as 216PTPP219, and this interaction is modulated by phosphorylation. Phosphorylation of T217 within the Tau(210-240) peptide led to a 6-fold reduction in the affinity, while single phosphorylation at either T212, T231, or S235 had no effect on the interaction. Nonetheless, combined phosphorylation of T231 and S235 led to a 3-fold reduction in the affinity, although these phosphorylations are not within the BIN1 SH3-bound region of the Tau peptide. Using nuclear magnetic resonance (NMR) spectroscopy, these phosphorylations were shown to affect the local secondary structure and dynamics of the Tau(210-240) peptide. Models of the (un)phosphorylated peptides were obtained from molecular dynamics (MD) simulation validated by experimental data and showed compaction of the phosphorylated peptide due to increased salt bridge formation. This dynamic folding might indirectly impact the BIN1 SH3 binding by a decreased accessibility of the binding site. Regulation of the binding might thus not only be due to local electrostatic or steric effects from phosphorylation but also to the modification of the conformational properties of Tau.


Subject(s)
Alzheimer Disease , tau Proteins , Humans , tau Proteins/metabolism , Phosphorylation , src Homology Domains , Protein Binding , Alzheimer Disease/metabolism , Peptides/chemistry , Binding Sites , Proline/metabolism , Nuclear Proteins/metabolism , Tumor Suppressor Proteins/chemistry , Adaptor Proteins, Signal Transducing/metabolism
4.
Inorg Chem ; 61(42): 16895-16904, 2022 Oct 24.
Article in English | MEDLINE | ID: mdl-36221930

ABSTRACT

To generate green hydrogen by water electrolysis, it is vital to develop highly efficient electrocatalysts for the oxygen evolution reaction (OER). The utilization of various 3d transition metal-based layered double hydroxides (LDHs), especially NiFe-LDH, has gained vast attention for OER under alkaline conditions. However, the lack of a proper electronic structure of the NiFe-LDH and low stability under high-pH conditions limit its large-scale application. To overcome these difficulties, in this study, we constructed an Sn-doped NiFe-LDH material using a simple wet-chemical method. The doping of Sn will synergistically increase the active surface sites of NiFe-LDH. The highly active NiFe-LDH Sn0.015(M) shows excellent OER activity by requiring an overpotential of 250 mV to drive 10 mA/cm2 current density, whereas the bare NiFe-LDH required an overpotential of 295 mV at the same current density. Also, NiFe-LDH Sn0.015(M) shows excellent long-term stability for 50 h in 1 M KOH and also exhibits a higher TOF value of 0.495 s-1, which is almost five times higher than that of bare NiFe-LDH. This study highlights Sn doping as an effective strategy for the development of low-cost, effective, stable, self-supported electrocatalysts with a high current density for improved OER and other catalytic applications in the near future.

5.
ACS Appl Mater Interfaces ; 14(41): 46581-46594, 2022 Oct 19.
Article in English | MEDLINE | ID: mdl-36194123

ABSTRACT

Finding the active center in a bimetallic zeolite imidazolate framework (ZIF) is highly crucial for the electrocatalytic oxygen evolution reaction (OER). In the present study, we constructed a bimetallic ZIF system with cobalt and manganese metal ions and subjected it to an electrospinning technique for feasible fiber formation. The obtained nanofibers delivered a lower overpotential value of 302 mV at a benchmarking current density of 10 mA cm-2 in an electrocatalytic OER study under alkaline conditions. The obtained Tafel slope and charge-transfer resistance values were 125 mV dec-1 and 4 Ω, respectively. The kinetics of the reaction is mainly attributed from the ratio of metals (Co and Mn) present in the catalyst. Jahn-Teller distortion reveals that the electrocatalytic active center on the Mn-incorporated ZIF-67 nanofibers (Mn-ZIF-67-NFs) was found to be Mn3+ along with the Mn2+ and Co2+ ions on the octahedral and tetrahedral sites, respectively, where Co2+ ions tend to suppress the distortion, which is well supported by density functional theory analysis, molecular orbital study, and magnetic studies.

6.
Nanoscale ; 14(29): 10360-10374, 2022 Jul 28.
Article in English | MEDLINE | ID: mdl-35708550

ABSTRACT

The development of efficient electrocatalysts for the water splitting process and understanding their fundamental catalytic mechanisms are highly essential to achieving high performance in energy conversion technologies. Herein, we have synthesised spinel nickel ferrite nanofibers (NiFe2O4-NFs) via an electrospinning (ES) method followed by a carbonization process. The resultant fiber was subjected to electrocatalytic water splitting reactions in alkaline medium. The catalytic efficiency of the NiFe2O4-NFs in OER was highly satisfactory. But it is not high enough to catalyse the HER process. Hence, palladium ions were decorated as nanosheets on NiFe2O4-NFs as a heterostructure to improve the catalytic efficiency for HER. Density functional theory (DFT) confirms that the addition of palladium to NiFe2O4-NFs helps to reduce the effect of catalyst poisoning and improve the efficiency of the catalyst. In an alkaline hybrid electrolyser, the required cell voltage was observed as 1.51 V at a fixed current density of 10 mA cm-2.

7.
Inorg Chem ; 61(10): 4502-4512, 2022 Mar 14.
Article in English | MEDLINE | ID: mdl-35230844

ABSTRACT

Vast attention from researchers is being given to the development of suitable oxygen evolution reaction (OER) electrocatalysts via water electrolysis. Being highly abundant, the use of transition-metal-based OER catalysts has been attractive more recently. Among the various transition-metal-based electrocatalysts, the use of layered double hydroxides (LDHs) has gained special attention from researchers owing to their high stability under OER conditions. In this work, we have reported the synthesis of trimetallic NiCoV-LDH via a simple wet-chemical method. The synthesized NiCoV-LDH possesses aggregated sheet-like structures and is screened for OER studies in alkaline medium. In the study of OER activity, the as-prepared catalyst demanded 280 mV overpotential and this was 42 mV less than the overpotential essential for pristine NiCo-LDH. Moreover, doping of a third metal into the NiCo-LDH system might lead to an increase in TOF values by almost three times. Apart from this, the electronic structural evaluation confirms that the doping of V3+ into NiCo-LDH could synergistically favor the electron transfer among the metal ions, which in turn increases the activity of the prepared catalyst toward the OER.

8.
Luminescence ; 37(6): 876-882, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35305059

ABSTRACT

A comparative study of interaction between chicken egg white lysozyme (Lyz) with two hexavalent chromate ions; chromate and dichromate; which are prevalently known for their toxicity, was investigated using different spectroscopic techniques along with a molecular docking study. Both steady-state and time-resolved studies revealed that the addition of chromate/dichromate is responsible for strong quenching of intrinsic fluorescence in Lyz and the quenching is caused by both static and dynamic quenching mechanisms. Different binding and thermodynamic parameters were also calculated at different temperatures from the intrinsic fluorescence of Lyz. The conformational change in Lyz and thermodynamic parameters obtained during the course of interaction with chromate/dichromate were well-supported by the molecular docking results.


Subject(s)
Chromates , Muramidase , Binding Sites , Circular Dichroism , Molecular Docking Simulation , Muramidase/chemistry , Protein Binding , Spectrometry, Fluorescence , Thermodynamics
9.
J Biomol Struct Dyn ; 40(16): 7303-7310, 2022 10.
Article in English | MEDLINE | ID: mdl-33682639

ABSTRACT

Drug repurposing requires a limited resource, cost-effective and faster method to combat severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Therefore, this in silico studies attempts to identify the drug-likeness properties of ravidasvir, an II/III phase clinical trial chronic hepatitis C drug against 3-Chymotrypsin-like protease (3CLpro) of SARS-CoV-2 to combat the ongoing coronavirus disease 2019 (COVID-19) pandemic. This protease is predominantly involved in virus replication cycle; hence it is considered as a potent drug target. The molecular docking results showed that ravidasvir was found to be potent inhibitors of 3CLpro with scoring function based binding energy is -26.7 kJ/mol. Further dynamic behaviour of apo form and complex form of ravidasvir with 3CLpro were studied using molecular dynamics (MD) simulations over 500 ns each, total 2 µs time scale. The motion of the protein was studied using principal component analysis of the MD simulation trajectories. The binding free energy calculated using MM/PBSA method from the MD simulation trajectory was -190.3 ± 70.2 kJ/mol and -106.0 ± 26.7 kJ/mol for GROMOS96 54A7 and AMBER99SB-ILDN force field, respectively. This in silico studies suggesting ravidasvir might be a potential lead molecule against SARS-CoV-2 for further optimization and drug development to combat the life-threatening COVID-19 pandemic.Communicated by Ramaswamy H. Sarma.


Subject(s)
COVID-19 Drug Treatment , SARS-CoV-2 , Humans , Benzimidazoles , Coronavirus 3C Proteases , Cysteine Endopeptidases/chemistry , Molecular Docking Simulation , Molecular Dynamics Simulation , Pandemics , Protease Inhibitors/chemistry , Valine/analogs & derivatives , Viral Nonstructural Proteins/chemistry
10.
ACS Appl Mater Interfaces ; 14(1): 1077-1091, 2022 Jan 12.
Article in English | MEDLINE | ID: mdl-34951298

ABSTRACT

Electrocatalytic water splitting has gained vast attention in recent decades for its role in catalyzing hydrogen production effectively as an alternative to fossil fuels. Moreover, the designing of highly efficient oxygen evolution reaction (OER) electrocatalysts across the universal pH conditions was more challengeable as in harsh anodic potentials, it questions the activity and stability of the concerned catalyst. Generally, geometrical engineering and electronic structural modulation of the catalyst can effectively boost the OER activity. Herein, a Co-doped RuO2 nanorod material is developed and used as an OER electrocatalyst at different pH conditions. Co-RuO2 exhibits a lower overpotential value of 238 mV in an alkaline environment (1 M KOH) with a Tafel slope value of 48 mV/dec. On the other hand, in acidic, neutral, and near-neutral environments, it required overpotentials of 328, 453, and 470 mV, respectively, to attain a 10 mA/cm2 current density. It is observed that doping of Co into the RuO2 could synergistically increase the active sites with the enhanced electrophilic nature of Ru4+ to accelerate OER in all of the pH ranges. This study finds the applicability of earth-abundant-based metals like Co to be used in universal pH conditions with a simple doping technique. Further, it assured the stable nature in all pH electrolytes and needs to be further explored with other metals in the future.

11.
Inorg Chem ; 60(24): 19429-19439, 2021 Dec 20.
Article in English | MEDLINE | ID: mdl-34821497

ABSTRACT

Development of a low-cost transition metal-based catalyst for water splitting is of prime importance for generating green hydrogen on an industrial scale. Recently, various transition metal-based oxides, hydroxides, sulfides, and other chalcogenide-based materials have been synthesized for developing a suitable anode material for the oxygen evolution reaction (OER). Among the various transition metal-based catalysts, their oxides have received much consideration for OER, especially in lower pH condition, and MnO2 is one of the oxides that have widely been used for the same. The large variation in the structural disorder of MnO2 and internal resistance at the electrode-electrolyte interfaces have limited its large-scale application. By considering the above limitations of MnO2, here in this work, we have designed Ni-doped MnO2 via a simple wet-chemical synthetic route, which has been successfully applied for OER application in 0.1 M KOH solution. Doping of various quantities of Ni into the MnO2 lattices improved the OER properties, and for achieving 10 mA/cm2 current density, the Ni-doped MnO2 containing 0.02 M of Ni2+ ions (coined as MnO2-Ni0.002(M)) demands only 445 mV overpotential, whereas the bare MnO2 required 610 mV overpotential. It has been proposed that the incorporation of nickel ions into the MnO2 lattices leads to an electron transfer from the Ni3+ ions to Mn4+, which in turn facilitates the Jahn-Teller distortion in the Mn-O octahedral unit. This electron transfer and the creation of a structural disorder in the Mn sites result in the improvization of the OER properties of the MnO2 materials.

12.
Dalton Trans ; 50(38): 13176-13200, 2021 Oct 05.
Article in English | MEDLINE | ID: mdl-34617532

ABSTRACT

The replacement of noble metals with alternative electrocatalysts is highly demanded for water splitting. From the exploration of 3D -transition metal based heterostructures, engineering at the nano-level brought more enhancements in active sites with reduced overpotentials for both the oxygen evolution reaction (OER) and hydrogen evolution reaction (HER). However, recent developments in 3D transition metal based heterostructures like direct growth on external substrates (Ni foam, Cu foam) gave highly impressive activities and stabilities. Research needs to be focused on how the active sites can be enhanced further with 3D heterostructures of transition metals by studying them with various counterparts like hydroxides, layered double hydroxides and phosphides for empowering both OER and HER applications. This perspective covers the way to enlarge the utilization of 3D heterostructures successfully in terms of reduced overpotentials, highly exposed active sites, increased electrical conductivity, porosity and high-rate activity. From the various approaches of growth of transition metal based 3D heterostructures, it is easy to fine tune the active sites to have a viable production of hydrogen with less applied energy input. Overall, this perspective outlines a direction to increase the number of active sites on 3D transition metal based heterostructures by growing on 3D foams for enhanced water splitting applications.

13.
Inorg Chem ; 60(20): 15818-15829, 2021 Oct 18.
Article in English | MEDLINE | ID: mdl-34601871

ABSTRACT

The development of a highly efficient electrocatalyst for the oxygen evolution reaction (OER) with a lower overpotential and high intrinsic activity is highly challenging owing to its sluggish kinetic behavior. As an alternative to the state-of-the-art OER catalyst, recently, transition-metal-based hydroxide materials have been shown to play important roles for the same. Owing to the high earth abundance of various Ni-based hydroxide and its derivatives, these are known to be highly studied materials for the OER. Herein, we report a simple wet-chemical synthesis of metallic gold-incorporated (by varying the concentration of Au3+ ions) Ni(OH)2 nanosheets as an active and stable electrocatalyst for the OER in 1 M KOH medium. The Au-Ni(OH)2 (2) catalyst demanded a low overpotential of 288 mV to attain a geometric current density of 10 mA/cm2 with a lower Tafel value of 55 mV/dec compared to bare Ni(OH)2 with a lower mass loading of only 0.1 mg/cm2. Tafel slope analysis reveals that the incorporation of metallic gold on the hydroxide surfaces could alter the mechanistic pathways of the overall OER reaction. It has been proposed that the incorporation of metallic gold over the Ni(OH)2 surfaces led to a change in the electronic structure of the electroactive nickel sites (Jahn-Teller distortion), which favors the OER by electronic aspects.

14.
Colloids Surf B Biointerfaces ; 202: 111696, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33770701

ABSTRACT

The importance of macromolecules paves the way towards a detailed molecular level investigation as all most all cellular processes occurring at the interior of cells in the form of proteins, enzymes, and other biological molecules are significantly affected because of their crowding. Thus, exploring the role of crowding environment on the denaturation and renaturation kinetics of protein molecules is of great importance. Here, CRABP I (cellular retinoic acid binding protein I) is employed as a model protein along with different molecular weights of Polyethylene glycol (PEG) as molecular crowders. The experimental evaluations are done by accessing the protein secondary structure analysis using circular dichroism (CD) spectroscopy and unfolding kinetics using intrinsic fluorescence of CRABP I at 37 °C to mimic the in vivo crowding environment. The unfolding kinetics results indicated that both PEG 2000 and PEG 4000 act as stabilizers by retarding the unfolding kinetic rates. Both kinetic and stability outcomes presented the importance of crowding environment on stability and kinetics of CRABP I. The molecular dynamics (MD) studies revealed that thirteen PEG 2000 molecules assembled during the 500 ns simulation, which increases the stability and percentage of ß-sheet. The experimental findings are well supported by the molecular dynamics simulation results.


Subject(s)
Polyethylene Glycols , Receptors, Retinoic Acid , Circular Dichroism , Kinetics , Protein Denaturation , Protein Folding , Protein Structure, Secondary
15.
J Photochem Photobiol B ; 179: 23-31, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29309999

ABSTRACT

In this present work, a detailed investigation of the effect of an anticancer drug, 5-Fluorouracil (5-FU), on conformation, stability and activity of lysozyme (Lyz) was reported. The interaction between Lyz and 5-FU was reflected in terms of intrinsic fluorescence quenching and change in secondary structure of Lyz. The mode of quenching mechanism involved was evaluated by the steady-state and time-resolved fluorescence measurements. Synchronous and Circular Dichroism (CD) results revealed the conformational changes induced in Lyz upon complexation with 5-FU. Additionally, the effect of temperature and chemical denaturant on the stability of Lyz-5FU complex was carried out. As well as the activity of Lyz in the absence and presence of 5-FU were measured using Micrococcus luteus strain. To support our experimental findings, in vitro interaction between Lyz and 5-FU was done by theoretical studies. The current study will provide a better understanding on the nature of the interactions possible between proteins and drug molecules, which might create a bench mark in medical science in terms of the toxic effect or biological benefits of drug molecules on protein structure and conformation.


Subject(s)
Fluorouracil/metabolism , Models, Molecular , Muramidase/metabolism , Binding Sites , Circular Dichroism , Fluorouracil/chemistry , Guanidine/chemistry , Muramidase/chemistry , Protein Binding , Protein Denaturation , Protein Stability , Protein Structure, Secondary , Spectrometry, Fluorescence , Temperature , Thermodynamics
16.
J Biomol Struct Dyn ; 36(11): 2938-2950, 2018 Aug.
Article in English | MEDLINE | ID: mdl-28927344

ABSTRACT

ATP-Binding cassette (ABC) transporters play an extensive role in the translocation of diverse sets of biologically important molecules across membrane. EchnocandinB (antifungal) and EcdL protein of Aspergillus rugulosus are encoded by the same cluster of genes. Co-expression of EcdL and echinocandinB reflects tightly linked biological functions. EcdL belongs to Multidrug Resistance associated Protein (MRP) subfamily of ABC transporters with an extra transmembrane domain zero (TMD0). Complete structure of MRP subfamily comprising of TMD0 domain, at atomic resolution is not known. We hypothesized that the transportation of echonocandinB is mediated via EcdL protein. Henceforth, it is pertinent to know the topological arrangement of TMD0, with other domains of protein and its possible role in transportation of echinocandinB. Absence of effective template for TMD0 domain lead us to model by I-TASSER, further structure has been refined by multiple template modelling using homologous templates of remaining domains (TMD1, NBD1, TMD2, NBD2). The modelled structure has been validated for packing, folding and stereochemical properties. MD simulation for 0.1 µs has been carried out in the biphasic environment for refinement of modelled protein. Non-redundant structures have been excavated by clustering of MD trajectory. The structural alignment of modelled structure has shown Z-score -37.9; 31.6, 31.5 with RMSD; 2.4, 4.2, 4.8 with ABC transporters; PDB ID 4F4C, 4M1 M, 4M2T, respectively, reflecting the correctness of structure. EchinocandinB has been docked to the modelled as well as to the clustered structures, which reveals interaction of echinocandinB with TMD0 and other TM helices in the translocation path build of TMDs.


Subject(s)
ATP-Binding Cassette Transporters/chemistry , Fungal Proteins/chemistry , Models, Molecular , Protein Conformation , Humans , Molecular Docking Simulation , Molecular Dynamics Simulation , Protein Binding , Protein Interaction Domains and Motifs , Structure-Activity Relationship
17.
J Biomol Struct Dyn ; 36(5): 1195-1211, 2018 Apr.
Article in English | MEDLINE | ID: mdl-28393626

ABSTRACT

Protein tyrosine phosphatase 1B (PTP1B) has been identified as a negative regulator of insulin and leptin signalling pathway; hence, it can be considered as a new therapeutic target of intervention for the treatment of type 2 diabetes. Inhibition of this molecular target takes care of both diabetes and obesity, i.e. diabestiy. In order to get more information on identification and optimization of lead, pharmacophore modelling, atom-based 3D QSAR, docking and molecular dynamics studies were carried out on a set of ligands containing thiazolidine scaffold. A six-point pharmacophore model consisting of three hydrogen bond acceptor (A), one negative ionic (N) and two aromatic rings (R) with discrete geometries as pharmacophoric features were developed for a predictive 3D QSAR model. The probable binding conformation of the ligands within the active site was studied through molecular docking. The molecular interactions and the structural features responsible for PTP1B inhibition and selectivity were further supplemented by molecular dynamics simulation study for a time scale of 30 ns. The present investigation has identified some of the indispensible structural features of thiazolidine analogues which can further be explored to optimize PTP1B inhibitors.


Subject(s)
Molecular Docking Simulation , Molecular Dynamics Simulation , Protein Tyrosine Phosphatase, Non-Receptor Type 1/chemistry , Thiazolidines/chemistry , Binding Sites , Computer Simulation , Drug Discovery , Hydrogen Bonding , Hydrophobic and Hydrophilic Interactions , Protein Binding , Protein Tyrosine Phosphatase, Non-Receptor Type 1/antagonists & inhibitors , Quantitative Structure-Activity Relationship , Thiazolidines/pharmacology
18.
J Phys Chem B ; 121(7): 1475-1484, 2017 02 23.
Article in English | MEDLINE | ID: mdl-28146352

ABSTRACT

A comparative study of binding interaction between Safranin O (SO) and Neutral Red (NR) with lysozyme (Lyz) has been reported using several spectroscopic methods along with computational approaches. Steady-state fluorescence measurements revealed static quenching as the major quenching mechanism in Lyz-SO and Lyz-NR interaction, which is further supported by time-resolved fluorescence and UV-vis measurements. Additionally, binding and thermodynamic parameters of these interactions are calculated from temperature dependent fluorescence data. Moreover, conformational changes of protein upon binding with SO and NR are provided by synchronous and circular dichroism (CD) measurements. Molecular docking study provided the exact binding location of SO and NR in lysozyme. Along with this study, molecular dynamics simulation is carried out to measure the stability of Lyz, Lyz-SO, and Lyz-NR complex. The present study revealed the strong binding affinity of dyes with lysozyme, and this study would be helpful toward medical and environmental science.


Subject(s)
Fluorescent Dyes/metabolism , Muramidase/metabolism , Neutral Red/metabolism , Phenazines/metabolism , Animals , Binding Sites , Chickens , Circular Dichroism , Fluorescent Dyes/chemistry , Hydrogen Bonding , Molecular Docking Simulation , Molecular Dynamics Simulation , Muramidase/chemistry , Neutral Red/chemistry , Phenazines/chemistry , Protein Binding , Protein Conformation/drug effects , Spectrometry, Fluorescence , Thermodynamics
19.
Org Lett ; 16(8): 2166-9, 2014 Apr 18.
Article in English | MEDLINE | ID: mdl-24742160

ABSTRACT

A new and efficient protocol to synthesize substituted benzo[b]carbazole derivatives has been demonstrated involving iron-catalyzed domino isomerization/cyclodehydration sequences from substituted 2-[(indoline-3-ylidene)(methyl)]benzaldehyde derivatives. The substrates could be easily made via Pd-catalyzed domino Heck-Suzuki coupling from 2-bromo-N-propargylanilide derivatives in high yields. Notably, the generality and efficiency of this two-stage domino strategy was further exemplified by the synthesis of a polycyclic benzofuran derivative.


Subject(s)
Benzaldehydes/chemistry , Benzene Derivatives/chemical synthesis , Carbazoles/chemical synthesis , Chlorides/chemistry , Ferric Compounds/chemistry , Heterocyclic Compounds, 4 or More Rings/chemical synthesis , Indoles/chemistry , Benzene Derivatives/chemistry , Carbazoles/chemistry , Catalysis , Ethylene Dichlorides/chemistry , Heterocyclic Compounds, 4 or More Rings/chemistry , Molecular Structure
20.
Org Biomol Chem ; 12(11): 1759-70, 2014 Mar 21.
Article in English | MEDLINE | ID: mdl-24500306

ABSTRACT

In this study we have developed an efficient synthesis of 1,2-dihydroquinoline and dihydrobenzo[b]azepine derivatives involving the iron(III) chloride intramolecular alkyne-carbonyl metathesis reaction for the first time. Various functionalized 1,2-dihydroquinolines and dihydrobenzo[b]azepines were prepared from easily accessible substrates in the presence of environmentally friendly and inexpensive iron(III) chloride (10 mol%) under mild conditions. The method is applicable to a wide range of substrates containing different functional groups and furnishing products in good to excellent yields. This methodology was further extended to the one-pot synthesis of 3-acyl quinolines via alkyne-carbonyl metathesis/detosylation/aromatization of N-propargyl-2-aminobenzaldehyde/acetophenone derivatives by the addition of NaOH/EtOH. While many Lewis acid and Brønsted acid catalysts were investigated, anhydrous iron(III) chloride turned out to be the best catalyst for this transformation.


Subject(s)
Acetophenones/chemistry , Alkynes/chemistry , Azepines/chemical synthesis , Benzaldehydes/chemistry , Ferric Compounds/chemistry , Quinolines/chemical synthesis , Azepines/chemistry , Catalysis , Magnetic Resonance Spectroscopy , Mass Spectrometry , Quinolines/chemistry
SELECTION OF CITATIONS
SEARCH DETAIL
...