CorkOakDB-The Cork Oak Genome Database Portal.

Quercus suber (cork oak) is an evergreen tree native to the Mediterranean basin, which plays a key role in the ecology and economy of this area. Over the last decades, this species has gone through an observable decline, mostly due to environmental factors. Deciphering the mechanisms of cork oak's response to the environment and getting a deep insight into its biology are crucial to counteract biotic and abiotic stresses compromising the stability of a unique ecosystem. In the light of these setbacks, the publication of the genome in 2018 was a major step towards understanding the genetic make-up of this species. In an effort to integrate this information in a comprehensive, accessible and intuitive format, we have developed The Cork Oak Genome Database Portal (CorkOakDB). The CorkOakDB is supported by the BioData.pt e-infrastructure, the Portuguese ELIXIR node for biological data. The portal gives public access to search and explore the curated genomic and transcriptomic data on this species. Moreover, CorkOakDB provides a user-friendly interface and functional tools to help the research community take advantage of the increased accessibility to genomic information. A study case is provided to highlight the functionalities of the portal. CorkOakDB guarantees the update, curation and data collection, aiming to collect data besides the genetic/genomic information, in order to become the main repository in cork oak research. Database URL: http://corkoakdb.org/.

Pest categorisation of Listronotus bonariensis.

The Panel on Plant Health performed a pest categorisation of Listronotus bonariensis (Coleoptera: Curculionidae), the Argentine stem weevil, for the EU. L. bonariensis is a well-defined species, recognised as a serious pest of pasture grasses, especially Lolium spp. and Poa annua, in New Zealand, and a rare pest of cereals in Argentina, Brazil and New Zealand. Larvae feed within the tillers and stems of grasses; adults can cut emerging cotyledons although they usually graze on leaves. Larval damage is most serious. Larval feeding causes a reduction in pasture quality that impacts on the production of grazing animals. L. bonariensis is not known to occur in the EU and is listed in Annex IIAI of Council Directive 2000/29/EC. L. bonariensis established in New Zealand via imported grass seeds and has been intercepted on grass seeds entering the EU. Considering the climatic similarities of the regions where the pest occurs and the very great extent to which hosts are grown across the EU, L. bonariensis has the potential to establish within the EU with two or three generations possible per year. Impacts could occur in grassland pastures and perhaps occasionally in cereals. In New Zealand, endophytic fungi occurring on potential hosts deter L. bonariensis from ovipositing on leaves and are toxic to larvae. Whether endophytic fungi on grasses in Europe could provide some resistance to L. bonariensis is uncertain. Phytosanitary measures are available to reduce the likelihood of introduction of this weevil. L. bonariensis fits all of the criteria assessed by EFSA to satisfy the definition of a Union quarantine pest. L. bonariensis does not meet the criterion of occurring in the EU territory for it to be regarded as a Union regulated non-quarantine pest.

Pest categorisation of Tecia solanivora.

The Panel on Plant Health performed a pest categorisation of Tecia solanivora (Lepidoptera: Gelechiidae) the Guatemalan potato tuber moth, for the EU. T. solanivora is a well-defined species which feeds exclusively on Solanum tuberosum. It was first described from Costa Rica in 1973 and has spread through Central America and into northern South America via trade of seed potatoes. It has also spread to Mexico and the Canary Islands and most recently to mainland Spain where it is under official control in Galicia and Asturias. Potatoes in the field and storage can be attacked. Some authors regard T. solanivora as the most important insect pest of potatoes globally. T. solanivora is currently regulated by Council Directive 2000/29/EC, listed in Annex II/AI as Scrobipalpopsis solanivora. Larvae feed and develop within potato tubers; infested tubers therefore provide a pathway for pest introduction and spread, as does the soil accompanying potato tubers if it is infested with eggs or pupae. As evidenced by the ongoing outbreaks in Spain, the EU has suitable conditions for the development and potential establishment of T. solanivora. The pest could spread within the EU via movement of infested tubers; adults can fly and disperse locally. Larval feeding destroys tubers in the field and in storage. In the warmer southern EU, where the development would be fastest, yield losses would be expected in potatoes. Measures are available to inhibit entry via traded commodities (e.g. prohibition on the introduction of S. tuberosum). T. solanivora satisfies all of the criteria assessed by EFSA to satisfy the definition of a Union quarantine pest. It does not satisfy EU regulated non-quarantine pest (RNQP) status because it is under official control. There are uncertainties over the effectiveness of preventing illegal imports via passenger baggage and the magnitude of potential impacts in the cool EU climate.

Pest categorisation of Toxoptera citricida.

The European Commission requested EFSA to conduct a pest categorisation of Toxoptera citricida (Hemiptera: Aphididae), an oligophagous aphid developing and reproducing parthenogenetically on tender leaf and flower flush of citrus (Rutaceae). T. citricida is a taxonomic entity with reliable methods available for detection and identification. It is regulated in the EU by Council Directive 2000/29/EC where it is listed in Annex IIAI as a harmful organism whose introduction and spread into the EU shall be banned. T. citricida is native to tropical regions of Southeast Asia and has spread to most citrus-growing areas worldwide, except California and the Mediterranean basin, causing significant damage to citrus as it is the most efficient vector of the Citrus tristeza virus (CTV). T. citricida occurs in Madeira and, with a restricted distribution, in the north-west of the Iberian Peninsula, mostly on backyard citrus trees. This may have hindered the effectiveness of the official control measures in these areas. There are further phytosanitary measures in place in the EU in order to limit entry via traded commodities. Citrus plants for planting are regulated and are a closed pathway. However, there is uncertainty regarding host status of some non-rutaceous plants on which this aphid has been recorded and so other plant genera may provide additional pathways. The EFSA Plant Health Panel concludes that the establishment of T. citricida in the main EU citrus growing areas around the Mediterranean would have significant impacts because of its ability to vector CTV. Considering the criteria within the remit of EFSA to assess the status as a potential Union quarantine pest (QP), as a potential protected zone quarantine pest (PZQP) or as a potential regulated non-quarantine pest (RNQP), T. citricida meets with no uncertainties the criteria assessed by EFSA for consideration as a potential Union QP.

Pest risk assessment of Eotetranychus lewisi for the EU territory.

Following the 2014 EFSA's Panel on Plant Health scientific opinion on the pest categorisation of the spider mite Eotetranychus lewisi, the European Commission requested the Panel to perform a pest risk assessment and evaluate the risk reduction options. A stochastic model was used to assess entry, establishment and spread and related uncertainties. In the EU, E. lewisi has only been reported to occur in Portugal (Madeira). Entry pathways assessed were strawberry plants for planting from the USA, poinsettia and raspberry plants for planting, and orange and lemon fruits from third countries. Entry is most likely via poinsettia. Under current EU phytosanitary requirements, there is around a one in ten chance that E. lewisi will establish outdoors over the next 10 years. Although unlikely, establishment would most likely occur in southern Europe where environmental conditions, temperature and host density, are most suitable. If E. lewisi did establish, pest spread is expected to be mainly human assisted, most likely the mite being transported long distances on plants for planting. Nevertheless, while remaining a regulated pest, spread would be slow and most likely confined to one NUTS 2 area after 10 years. Under a scenario with enhanced measures (pest free place of production) at origin, the Panel's assessment indicate that it is extremely unlikely that E. lewisi would establish within 10 years hence spread is also extremely unlikely. The absence of trade of host plants from Madeira to other parts of the EU could explain why E. lewisi has not spread to other EU Member States. E. lewisi is reported as reducing yield and quality of peaches and poinsettia and is regarded as a growing concern for strawberry and raspberry growers in the Americas. The Panel concludes that should E. lewisi be introduced in the EU similar impacts could be expected.

Pest categorisation of Hishimonus phycitis.

The Panel on Plant Health performed a pest categorisation of Hishimonus phycitis (Hemiptera: Cicadellidae) for the EU. H. phycitis is a well-defined species, occurring in tropical and subtropical Asian countries from Iran to Malaysia. H. phycitis is polyphagous. Hosts of particular relevance to the EU include Citrus spp. and Solanum melongena. While harmful in its own right as a leafhopper extracting host nutrients through feeding, it is regarded in the Middle East more significantly as a vector of Witches' broom disease of lime phytoplasma, which limits production of Citrus aurantifolia, and in India as a vector of brinjal little-leaf phytoplasma impacting S. melongena yields. H. phycitis is currently regulated by Council Directive 2000/29/EC, listed in Annex II/AI as Hishomonus phycitis (sic). Eggs planted on host plants for planting could provide a pathway for entry into the EU. The EU has eco-climatic conditions that are also found in countries where H. phycitis occurs although it is unknown whether H. phycitis occurs in those areas. There is therefore considerable uncertainty around EU establishment. Any establishment is likely to be limited to the warmest areas around the Mediterranean. As a free-living organism with adults capable of flight, spread within the EU would be possible but confined to the limited area where establishment could occur. Measures are available to inhibit entry via traded commodities (e.g. prohibition on the introduction of Citrus plants for planting; sourcing other hosts from pest free areas). H. phycitis does satisfy all of the criteria that are within the remit of EFSA to assess to be regarded as a Union quarantine pest. It is uncertain if eggs of H. phycitis would carry phytoplasmas into the EU as transovarial transmission from infected females to eggs has not been demonstrated.

Pest categorisation of Anthonomus bisignifer.

The Panel on Plant Health performed a pest categorisation of the strawberry blossom weevil, Anthonomus bisignifer Schenkling, (Coleoptera: Curculionidae), for the EU. Anthonomus bisignifer is a well-defined and distinguishable species, recognised as an occasional pest of strawberry (Fragaria) fruit production in Japan where it is also feeds on Rubus and Rosa spp. Adults clip developing buds, preventing fruit development and reducing yield. Losses are variable and are likely to depend on the cultivars attacked. Severe damage to Fragaria spp. has been reported but is rare. Flowers of ornamental garden Rosa spp. are more commonly damaged. Anthonomus bisignifer is not known to occur in the EU. A. bisignifer is listed in Annex IIAI of Council Directive 2000/29/EC. Host plants for planting could provide a pathway although only a few non-EU countries can export Fragaria plants for planting to the EU and A. bisignifer is not known to occur in any of them. However, Rubus and Rosa plants for planting could provide a potential pathway to introduce A. bisignifer. Considering climatic similarities of the region where A. bisignifer occurs and where hosts occur in the EU, A. bisignifer has the potential to establish within the EU. There would be one generation per year, as in Japan. Impacts could be expected on field grown and protected Fragaria, field grown Rubus and garden Rosa spp. There is uncertainty regarding which other hosts exist within Rosaceae, hence impacts could potentially be seen on other species too. Phytosanitary measures are available to reduce the likelihood of introduction of A. bisignifer. All criteria assessed by EFSA for consideration as a potential Union quarantine pest are met. As A. bisignifer is not known to occur in the EU, this criterion assessed by EFSA to consider it as a Union regulated non-quarantine pest is not met.

Pest categorisation of Anthonomus grandis.

The European Commission requested EFSA to conduct a pest categorisation of Anthonomus grandis (Coleoptera: Curculionidae), an oligophagous pest weevil feeding on Malvaceae, including Gossypium spp., Hampea spp., Cienfuegosia spp. and Hibiscus pernambucensis. Marginal reproduction has also been observed on the ornamental Hibiscus syriacus. A. grandis is a taxonomic entity with reliable methods available for identification. It is regulated in the EU by Council Directive 2000/29/EC where it is listed in Annex IIB as a harmful organism whose introduction into EU Protected Zones (PZ) (Greece and the Spanish Communities of Andalusia, Catalonia, Extremadura, Murcia and Valencia) is regulated. A. grandis is native to tropical regions of Mesoamerica and has spread to other cotton-growing areas in the Americas, from the USA to Argentina, causing significant damage to this crop. An eradication programme is in progress in the USA and has been successful in 16 previously infested states. In the EU, phytosanitary measures are in place in order to limit entry via traded commodities. Cotton seeds and fruit, as well as unginned cotton are currently regulated for the PZ but remain a potential pathway. Furthermore, ornamental Malvaceae (e.g. Hibiscus spp.) originating in infested areas may provide additional pathways. The EFSA Plant Health Panel concludes that A. grandis could establish and spread in the cotton-growing areas of southern EU. Considering the criteria within the remit of EFSA to assess the status as a potential Union quarantine pest (QP), as a potential protected zone quarantine pest (PZQP), or as a potential regulated non-quarantine pest (RNQP), A. grandis satisfies with no uncertainties the criteria to be regarded as a Union QP. However, it does not meet the criterion of occurrence in the EU territory (for PZQP) plus that of plants for planting being the principal means of spread (for RNQP).