Flagella bending affects macroscopic properties of bacterial suspensions.

To survive in harsh conditions, motile bacteria swim in complex environments and respond to the surrounding flow. Here, we develop a mathematical model describing how flagella bending affects macroscopic properties of bacterial suspensions. First, we show how the flagella bending contributes to the decrease in the effective viscosity observed in dilute suspension. Our results do not impose tumbling (random reorientation) as was previously done to explain the viscosity reduction. Second, we demonstrate how a bacterium escapes from wall entrapment due to the self-induced buckling of flagella. Our results shed light on the role of flexible bacterial flagella in interactions of bacteria with shear flow and walls or obstacles.

Rayleigh approximation to ground state of the Bose and Coulomb glasses.

Glasses are rigid systems in which competing interactions prevent simultaneous minimization of local energies. This leads to frustration and highly degenerate ground states the nature and properties of which are still far from being thoroughly understood. We report an analytical approach based on the method of functional equations that allows us to construct the Rayleigh approximation to the ground state of a two-dimensional (2D) random Coulomb system with logarithmic interactions. We realize a model for 2D Coulomb glass as a cylindrical type II superconductor containing randomly located columnar defects (CD) which trap superconducting vortices induced by applied magnetic field. Our findings break ground for analytical studies of glassy systems, marking an important step towards understanding their properties.

Flexibility of bacterial flagella in external shear results in complex swimming trajectories.

Many bacteria use rotating helical flagella in swimming motility. In the search for food or migration towards a new habitat, bacteria occasionally unbundle their flagellar filaments and tumble, leading to an abrupt change in direction. Flexible flagella can also be easily deformed by external shear flow, leading to complex bacterial trajectories. Here, we examine the effects of flagella flexibility on the navigation of bacteria in two fundamental shear flows: planar shear and Poiseuille flow realized in long channels. On the basis of slender body elastodynamics and numerical analysis, we discovered a variety of non-trivial effects stemming from the interplay of self-propulsion, elasticity and shear-induced flagellar bending. We show that in planar shear flow the bacteria execute periodic motion, whereas in Poiseuille flow, they migrate towards the centre of the channel or converge towards a limit cycle. We also find that even a small amount of random reorientation can induce a strong response of bacteria, leading to overall non-periodic trajectories. Our findings exemplify the sensitive role of flagellar flexibility and shed new light on the navigation of bacteria in complex shear flows.

Collision of microswimmers in a viscous fluid.

We investigate the effects of boundary conditions on the surface of self-propelled spherical swimmers moving in a viscous fluid with a low Reynolds number. We first show that collisions between the swimmers are impossible under the commonly used no-slip conditions. Next we demonstrate that collisions do occur if the more general Navier boundary conditions, allowing for a finite slip on the surface that produces drag, are imposed on the boundary of swimmers. The presence of a small inertia for each swimmer does not influence whether collisions occur between swimmers.

Effective shear viscosity and dynamics of suspensions of micro-swimmers from small to moderate concentrations.

Recently, there has been a number of experimental studies convincingly demonstrating that a suspension of self-propelled bacteria (microswimmers in general) may have an effective viscosity significantly smaller than the viscosity of the ambient fluid. This is in sharp contrast with suspensions of hard passive inclusions, whose presence always increases the viscosity. Here we present a 2D model for a suspension of microswimmers in a fluid and analyze it analytically in the dilute regime (no swimmer-swimmer interactions) and numerically using a Mimetic Finite Difference discretization. Our analysis shows that in the dilute regime (in the absence of rotational diffusion) the effective shear viscosity is not affected by self-propulsion. But at the moderate concentrations (due to swimmer-swimmer interactions) the effective viscosity decreases linearly as a function of the propulsion strength of the swimmers. These findings prove that (i) a physically observable decrease of viscosity for a suspension of self-propelled microswimmers can be explained purely by hydrodynamic interactions and (ii) self-propulsion and interaction of swimmers are both essential to the reduction of the effective shear viscosity. We also performed a number of numerical experiments analyzing the dynamics of swimmers resulting from pairwise interactions. The numerical results agree with the physically observed phenomena (e.g., attraction of swimmer to swimmer and swimmer to the wall). This is viewed as an additional validation of the model and the numerical scheme.