Design and construction of a research atomic layer deposition system for in situ infrared and electron spectroscopies.

A description is given of an ultra-high vacuum surface-analysis chamber that incorporates an internal cell for performing atomic layer deposition at a pressure of up to ∼1 Torr. The apparatus permits the growth process to be interrupted in stages during which data can be obtained using infrared and x-ray photoemission spectroscopies together with other electron-based techniques. Demonstration results are given for the adsorption of H2O on Si (100) at a pressure of ∼0.3 Torr. The system described is generally applicable in the study of any surface reaction under non-high-vacuum conditions in which there is a need for both infrared and electron spectroscopies.

Investigation of the interaction of γ-Al2O3 with aqueous solutions of dimethyl methylphosphonate using infrared multiple internal reflection spectroscopy.

The interaction of dilute solutions of dimethyl methylphosphonate (DMMP) in H(2)O with thin porous layers of γ-Al(2)O(3) has been studied under steady-state conditions using infrared multiple-internal-reflection spectroscopy. Upon the initial introduction of the DMMP solution to a previously H(2)O-saturated surface, DMMP diffuses into the porous layer and displaces weakly hydrogen-bonded H(2)O molecules. This is accompanied by hydrolysis of the γ-Al(2)O(3) to form Al(OH)(3) and/or AlO(OH). The P═O group of DMMP interacts predominantly with H(2)O and gives no clear indication of bonding to the oxide surface itself, from which it is inferred that the displacement of weakly adsorbed H(2)O results from the interaction of acidic Al-OH sites with the methoxy O atoms of DMMP. No hydrolysis of the DMMP, either in solution or in contact with the oxide, was detectable under the present conditions. The results have practical implications in the decontamination of materials following exposure to toxic reagents related to DMMP.

Effects of molecular adsorption on the electronic structure of single-layer graphene.

The interaction of small molecules (CCl(4), CS(2), H(2)O, and acetone) with single-layer graphene (SLG) has been studied under steady-state conditions using infrared multiple-internal-reflection spectroscopy. Adsorption results in a broad and intense absorption band, spanning the ∼200 to 500 meV range, which is attributed to electronic excitation. This effect, which has not previously been reported for SLG, has been further investigated using dispersion-corrected density functional theory to model the adsorption of H(2)O on SLG supported on an SiO(2) substrate. However, the ideal and defect-free model does not reproduce the observed adsorption-induced electronic transition. This and other observations suggest that the effect is extrinsic, possibly the result of an adsorption-induced change in the in-plane strain, with important differences arising between species that form liquid-like layers under steady-state conditions and those that do not. Furthermore, the C-H stretching modes of CH(2) groups, incorporated in the SLG as defects, undergo nonadiabatic coupling to the electronic transition. This leads to pronounced antiresonance effects in the line shapes, which are analyzed quantitatively. These results are useful in understanding environmental effects on graphene electronic structure and in demonstrating the use of the vibrational spectroscopy of H-containing defects in characterizing SLG structure.

Effect of humidity on the interaction of dimethyl methylphosphonate (DMMP) vapor with SiO2 and Al2O3 surfaces, studied using infrared attenuated total reflection spectroscopy.

Infrared attenuated total reflection spectroscopy has been used to study the interaction of DMMP vapor with SiO(2), Al(2)O(3), and AlO(OH) vs relative humidity (RH) and DMMP partial pressure (P/P(0)). For SiO(2) the growth with increasing RH of ice-like and liquid-like layers is seen in agreement with previous work. H↔D exchange during exposure to H(2)O and D(2)O indicates that the ice-like layer is more resistant to exchange, consistent with stronger H-bonding than in the liquid-like layer. Exposure of nominally dry SiO(2) to D(2)O indicates the existence of adsorbed H(2)O that does not exhibit an ice-like spectrum. The ice-like layer appears only at a finite RH. Exposure of SiO(2) to DMMP in the absence of intentionally added H(2)O shows the formation of a strongly bound molecular species followed by a liquid-like layer. The strong interaction involves SiO-H···O═P bonds to surface silanols and/or HO-H···O═P bonds to preadsorbed molecular H(2)O. At a finite RH the ice-like layer forms on SiO(2) even in the presence of DMMP up to P/P(0) = 0.30. DMMP does not appear to penetrate the ice-like layer under these conditions, and the tendency to form a such a layer drives the displacement of DMMP. Amorphous Al(2)O(3) and AlO(OH) do not exhibit an ice-like H(2)O layer. Both have a higher surface OH content than does SiO(2), which leads to higher coverages of H(2)O or DMMP at equivalent RH or P/P(0). At low P/P(0), for which adsorption is dominated by Al-OH···O═P bonding, a-Al(2)O(3) interacts with DMMP more strongly than does AlO(OH) as a result of the higher acidity of OH sites on the former. Up to RH = 0.30 and P/P(0) = 0.30, DMMP appears to remain bonded to the surface rather than being displaced by H(2)O. H(2)O appears to have little or no effect on the total amount of DMMP adsorbed on any of these surfaces, up to an RH of 0.30 and a P/P(0) of 0.30. The results have implications for the transport of DMMP and related molecules on oxide surfaces in the environment.

Cathodoluminescence studies of the inhomogeneities in Sn-doped Ga2O3 nanowires.

Cathodoluminescence real-color imaging and spectroscopy were employed to study the properties of Ga(2)O(3) nanowires grown with different Sn/Ga ratios. The structures grown under Sn-rich conditions show large spectral emission variation, ranging from blue to red, with a green transition zone. Spectral emission changes correlate with changes in the chemical composition and structure found by energy dispersive spectroscopy and electron diffraction. A sharp transition from green to red emission correlates with a phase transition of beta-Ga(2)O(3) to polycrystalline SnO(2). The origin of the green emission band is discussed based on ab initio calculation results.

Functionalization of beta-Ga2O3 nanoribbons: a combined computational and infrared spectroscopic study.

The adsorption of H 2O, alcohols (CH 3OH and 1-octanol), and carboxylic acids (formic, acetic, and pentanoic) on beta-Ga 2O 3 nanoribbons has been studied using infrared reflection-absorption spectroscopy (IRRAS) and/or ab initio computational modeling. Adsorption energies and geometries are sensitive to surface structure, and hydrogen bonding plays a significant role in stabilizing adsorbed species. On the more stable (100)-B surface, computation shows that the physisorption of H 2O or CH 3OH is weakly exothermic whereas chemisorption via O-H bond dissociation is weakly endothermic. Experiment finds that a large fraction of a saturation coverage of adsorbed 1-octanol is displaced by exposure to acetic acid vapor. This is consistent with computational results showing that acids adsorb more strongly than methanol on this surface. The remaining alcohol, not displaced by acetic acid, suggests the presence of defects and/or (100)-A regions because computation shows that this less-stable surface adsorbs methanol more strongly than does the (100)-B. The nu(C-H) modes of adsorbed 1-octanol are easily detected whereas no adsorbed H 2O is observed even though H 2O and CH 3OH exhibit similar adsorption energies. It is inferred from this that the failure to detect H 2O on the dominant (100)-B surface results from the orientation of the physisorbed H 2O essentially parallel to the surface. Computation shows that this configuration is stabilized by H bonding. For chemisorbed formic acid, computation shows that a bridging carboxylate structure is favored over a bidentate or monodentate configuration. Computation also shows that chemisorption is favored on the (100)-A surface but physisorption is favored on the more stable (100)-B. Analysis of IRRAS data for acetic and pentanoic acids finds evidence for both types of adsorption. The carboxylate resists displacement by H 2O vapor, which suggests that carboxylic acids may be useful for functionalizing beta-Ga 2O 3 surfaces. The results provide insight into the interplay between surface structure and reactivity on an oxide surface and about the importance of hydrogen bonding in determining adsorbate structure.

Infrared spectroscopy and surface chemistry of beta-Ga(2)O(3) nanoribbons.

The structure and surface chemistry of crystalline beta-Ga2O3 nanoribbons (NRs), deposited in a thin layer on various metallic and dielectric substrates (mainly on Au), have been characterized using vibrational spectroscopy. The results have been analyzed with the aid of a previous ab initio theoretical model for the beta-Ga2O3 surface structure. Raman spectra and normal-incidence infrared (IR) transmission data show little if any difference from corresponding results for bulk single crystals. For a layer formed on a metallic substrate, IR reflection-absorption spectroscopy (IRRAS) shows longitudinal-optic (LO) modes that are red-shifted by approximately 37 cm-1 relative to those of a bulk crystal. Evidence is also seen for a bonding interaction at the Ga2O3/Au interface following heating in room air. Polarization-modulated IRRAS has been used to study the adsorption of pyridine under steady-state conditions in ambient pressures as high as approximately 5 Torr. The characteristic nu19b and nu8a modes of adsorbed pyridine exhibit little or no shift from the corresponding gas-phase values. This indicates that the surface is only weakly acidic, consistent with the theoretical prediction that singly unsaturated octahedral Ga sites are the only reactive cation sites on the NR surface. However, evidence for adsorption at defect sites is seen in the form of more strongly shifted modes that saturate in intensity at low pyridine coverage. The effect of H atoms, formed by thermal cracking of H2, has also been studied. No Ga-H or O-H bonds are observed on the pristine NR surface. This suggests that the previously reported presence of such species on Ga2O3 powders heated in H2 is a result of a partial reduction of the oxide surface. The heat of adsorption of atomic H on the pristine beta-Ga2O3(100) surface at 0 K is computed to be -1.79 eV per H at saturation (average of Ga-H and O-H sites), whereas a value of +0.45 eV per H is found for the dissociative adsorption of H2. This suggests that rapid recombinative desorption of H2 may limit the coverage of chemisorbed H on this surface.

Infrared spectroscopic study of O2 interaction with carbon nanotubes.

Infrared reflection-absorption spectroscopic measurements have been performed on single-wall carbon nanotubes (SWNTs), cleaned by heating to approximately 500 degrees C in vacuo, during exposure to pure 16O2 or 18O2 at room temperature and at pressures of up to approximately 630 Torr. No vibrational signature of any form of adsorbed O is detected. However, structure is seen which is very similar to that observed for the adsorption of atomic H or D and which indicates changes in the SWNT vibrational spectrum. The close similarity between the spectra for atomic H and D, on one hand, and O2 on the other is an unexpected result. Changes are also noted in the broad background extending throughout the mid-IR which arises from the Drude contribution to the reflectance. All these effects increase with O2 exposure and are essentially irreversible upon evacuation of the gas. The results are consistent with other data indicating that O2 interacts only weakly with, and does not chemisorb on, pristine regions of the SWNT under these conditions. The small and irreversible effects seen upon O2 exposure are interpreted in terms of enhanced chemisorption, at or near defective regions of the SWNT wall, which saturates at a low O coverage.

Adsorption on carbon nanotubes studied using polarization-modulated infrared reflection-absorption spectroscopy.

Single-wall carbon nanotubes (SWNTs), deposited onto an Al substrate from a liquid suspension, have been cleaned by annealing in ultrahigh vacuum. The effects of exposing the sample in situ to atomic H (or D) and/or to dimethyl methylphosphonate [DMMP, (CH(3)O)(2)(CH(3))P=O] were then studied using polarization-modulated infrared reflection-absorption spectroscopy. Atomic H reacts preferentially near strained or defective regions in the nanotube wall to produce a spectrum consistent with alkane-like species (>CH(2) and -CH(3)). Only a small fraction of the >C=C< sites in the nanotube wall react with H, and there is no clear evidence for monohydride >C(H)-C(H)< species. For DMMP, data were obtained under steady-state conditions in reagent pressures in excess of half the room-temperature vapor pressure. Adsorption occurs via the P=O group with a coverage that depends on the ambient pressure. Varying the DMMP coverage by changing the pressure causes changes in the spectrum that can be related to the strength of the DMMP/SWNT interaction. Preadsorbed H is seen to have little or no effect on the subsequent adsorption of DMMP. For DMMP, the molecular features are superimposed on a broad, smoothly varying background that can be related to adsorption-induced changes in the Drude parameters characterizing the SWNT free-carrier density and scattering lifetime.

Measurement of the cytotoxic effects of different strains of Mycoplasma equigenitalium on the equine uterine tube using a calmodulin assay.

The cytopathic effects induced by five strains of Mycoplasma equigenitalium for cells of equine uterine tube explants were tested by measuring changes in cellular and extracellular concentrations of calmodulin (CaM). Calmodulin concentrations in samples of total homogenate (TH) and total homogenate supernates (THS) of the infected equine uterine tube explants were significantly lower than respective measurements on noninfected controls. In tissue culture medium fractions (TCM) of some infected explants, CaM concentrations were significantly higher than noninfected controls (p > 0.95). The results suggest that M. equigenitalium colonization on ciliated cells of the equine uterine tube can affect the permeability of the cell membrane leading to leakage or release of CaM during cell breakdown. Measurement of CaM concentrations in samples of TH revealed significant differences in the cytotoxic effects induced by different strains of M. equigenitalium on the equine uterine tube (EUT). The data suggests that some strains of M. equigenitalium may have a role in reproductive failure in the mare. In addition comparisons of the means of the concentrations of CaM in samples of TH or THS in EUT explants from four mares in the follicular and four in the luteal phase of the estrous cycle were found to be not significantly different.

Wavelength-scanning polarization-modulation ellipsometry: some practical considerations.

A discussion is presented of the practical considerations involved in wavelength-scanning polarization-modulation ellipsometry. Emphasis is placed on factors affecting accuracy and precision and on the alignment of the optical elements. The system described is used to measure the optical properties of air-cleaved KCI and of clean and tarnished Ag surfaces in ultrahigh vacuum in the 250-650-nm range.