Reproductive phenology is a repeatable, heritable trait linked to the timing of other life-history events in a migratory marine predator.

Population-level shifts in reproductive phenology in response to environmental change are common, but whether individual-level responses are modified by demographic and genetic factors remains less well understood. We used mixed models to quantify how reproductive timing varied across 1772 female southern elephant seals (Mirounga leonina) breeding at Marion Island in the Southern Ocean (1989-2019), and to identify the factors that correlate with phenological shifts within and between individuals. We found strong support for covariation in the timing of breeding arrival dates and the timing of the preceding moult. Breeding arrival dates were more repeatable at the individual level, as compared with the population level, even after accounting for individual traits (wean date as a pup, age and breeding experience) associated with phenological variability. Mother-daughter similarities in breeding phenology were also evident, indicating that additive genetic effects may contribute to between-individual variation in breeding phenology. Over 30 years, elephant seal phenology did not change towards earlier or later dates, and we found no correlation between annual fluctuations in phenology and indices of environmental variation. Our results show how maternal genetic (or non-genetic) effects, individual traits and linkages between cyclical life-history events can drive within- and between-individual variation in reproductive phenology.

A global cline in a colour polymorphism suggests a limited contribution of gene flow towards the recovery of a heavily exploited marine mammal.

Evaluating how populations are connected by migration is important for understanding species resilience because gene flow can facilitate recovery from demographic declines. We therefore investigated the extent to which migration may have contributed to the global recovery of the Antarctic fur seal (Arctocephalus gazella), a circumpolar distributed marine mammal that was brought to the brink of extinction by the sealing industry in the eighteenth and nineteenth centuries. It is widely believed that animals emigrating from South Georgia, where a relict population escaped sealing, contributed to the re-establishment of formerly occupied breeding colonies across the geographical range of the species. To investigate this, we interrogated a genetic polymorphism (S291F) in the melanocortin 1 receptor gene, which is responsible for a cream-coloured phenotype that is relatively abundant at South Georgia and which appears to have recently spread to localities as far afield as Marion Island in the sub-Antarctic Indian Ocean. By sequencing a short region of this gene in 1492 pups from eight breeding colonies, we showed that S291F frequency rapidly declines with increasing geographical distance from South Georgia, consistent with locally restricted gene flow from South Georgia mainly to the South Shetland Islands and Bouvetøya. The S291F allele was not detected farther afield, suggesting that although emigrants from South Georgia may have been locally important, they are unlikely to have played a major role in the recovery of geographically more distant populations.

Oral, Maxillofacial and Dental Diseases in Captive Cheetahs (Acinonyx jubatus).

Descriptions of several oral, maxillofacial and dental conditions/diseases exist for a variety of captive large felids, but little is reported on the pathology of free roaming large felids. Apart from focal palatine erosions (FPEs) as initially described by Fitch and Fagan (1982) and some reference to absent incisor teeth, few data exist on diseases affecting the oral, maxillofacial and dental structures of cheetahs (Acinonyx jubatus), regardless of their captivity status. This study reports 18 different conditions affecting the teeth, bone and oral cavity soft tissue of cheetahs, based on initial assessment of 256 animals over 11 years (2002-2012) in South Africa and Namibia. This report excludes oral tumours or FPEs, but includes several acquired and developmental conditions never described before.

Population differentiation in the context of Holocene climate change for a migratory marine species, the southern elephant seal.

Understanding observed patterns of connectivity requires an understanding of the evolutionary processes that determine genetic structure among populations, with the most common models being associated with isolation by distance, allopatry or vicariance. Pinnipeds are annual breeders with the capacity for extensive range overlap during seasonal migrations, establishing the potential for the evolution of isolation by distance. Here, we assess the pattern of differentiation among six breeding colonies of the southern elephant seal, Mirounga leonina, based on mtDNA and 15 neutral microsatellite DNA markers, and consider measures of their demography and connectivity. We show that all breeding colonies are genetically divergent and that connectivity in this highly mobile pinniped is not strongly associated with geographic distance, but more likely linked to Holocene climate change and demographic processes. Estimates of divergence times between populations were all after the last glacial maximum, and there was evidence for directional migration in a clockwise pattern (with the prevailing current) around the Antarctic. We discuss the mechanisms by which climate change may have contributed to the contemporary genetic structure of southern elephant seal populations and the broader implications.

Estimating exposed pulp lengths of tusks in the African elephant (Loxodonta africana africana).

Captive and wild African elephants frequently suffer tusk fractures. Several institutions shorten the tusks of captive elephants to reduce fractures and injury as a result of behaviour within enclosures. Fracturing or coronal amputations that expose pulp lead to pain for the elephant. Estimating coronal pulp lengths may thus help to minimise the risk of pulp exposure during amputations. We aimed to determine the length of the pulp beyond the lip margin from an external tusk characteristic. Tusks collected from elephants in Namibia and the Kruger National Park had similar morphological relationships. This statistical property allowed us to correct for missing data in our data sets. Pulp volume and pulp length correlated with tusk circumference at the lip. Even so, the circumference at the lip could not predict the length of the pulp in the crown external to the lip. Our findings suggest that tusks, irrespective of sex or age, amputated further than 300 mm from the lip should not expose pulp.

Tusklessness and tusk fractures in free-ranging African savanna elephants (Loxodonta africana).

The incidence of tusklessness varies between free-ranging African elephant populations. Sex-linked genetic drift predicts 2 outcomes--the condition becomes fixed and sex-specific incidences diverge when populations are small and/or heavily poached. By contrast, for large and intact populations, tusklessness diminishes and there is no variation between sexes. We tested these predictions by comparing sex-specific incidences between 15 populations: a small one with a skewed founder effect towards tusklessness; 5 that had experienced intense levels of poaching; 2 that had been subjected to non-selective culling and 7 that are relatively pristine. Patterns of rainfall were studied of tusk fractures amongst these populations to correct for any effect that acquired tusklessness may have on our predictions. The incidence of tusk fractures was related to annual rainfall, but the mechanism that leads to an increase of the condition in drier areas was not clear Incidences of tusk fractures in free-ranging populations implied that the frequency of acquired bilateral tusklessness is low and should not affect our results. All males had tusks. Tusklessness in females was high in the small skewed founder population and some of those where there was a history of poaching. The incidence is expected to decline if the residual population is large.

Postsealing genetic variation and population structure of two species of fur seal (Arctocephalus gazella and A. tropicalis).

Commercial sealing in the 18th and 19th centuries had a major impact on the Antarctic and subantarctic fur seal populations (Arctocephalus gazella and A. tropicalis) in the Southern Ocean. The intensive and unrestricted nature of the industry ensured substantial reductions in population sizes and resulted in both species becoming locally extinct at some sites. However, both species are continuing to recover, through the recolonization of islands across their former range and increasing population size. This study investigated the extent and pattern of genetic variation in each species to examine the hypothesis that higher levels of historic sealing in A. gazella have resulted in a greater loss of genetic variability and population structure compared with A. tropicalis. A 316-bp section of the mitochondrial control region was sequenced and revealed nucleotide diversities of 3.2% and 4.8% for A. gazella and A. tropicalis, respectively. There was no geographical distribution of lineages observed within either species, although the respective PhiST values of 0.074 and 0.19 were significantly greater than zero. These data indicate low levels of population structure in A. gazella and relatively high levels in A. tropicalis. Additional samples screened with restriction endonucleases were incorporated, and the distribution of restriction fragment length polymorphism (RFLP) and sequence haplotypes were examined to identify the main source populations of newly recolonized islands. For A. tropicalis, the data suggest that Macquarie Island and Iles Crozet were probably recolonized by females from Marion Island, and to a lesser extent Ile Amsterdam. Although there was less population structure within A. gazella, there were two geographical regions identified: a western region containing the populations of South Georgia and Bouvetoya, which were the probable sources for populations at Marion, the South Shetland and Heard Islands; and an eastern region containing the panmictic populations of Iles Kerguelen and Macquarie Island. The latter region may be a result of a pronounced founder effect, or represent a remnant population that survived sealing at Iles Kerguelen.

Survivorship of a declining population of southern elephant seals, Mirounga leonina, in relation to age, sex and cohort.

This study quantified both the age- and sex-specific survival rates of juveniles and adults, and tested for interannual differences in age-specific survival rates of the southern elephant seal population at Marion Island. Pups were tagged on an annual basis from 1983 onwards at Marion Island, and a consistent recapture program yielded data that was analysed using the software package MARK to obtain maximum-likelihood estimates of survival and capture probability. On average, 1st-year survival was 0.58 and 0.62, and survival rate averaged over the first 3 years of life, 0.69 and 0.74 for males and females, respectively. From years 4 to 9, the average survival rate was 0.66 and 0.75 for males and females, respectively. Survival estimates for elephant seals in their 10th-13th year are also presented, although these are based on very small sample sizes. Averages of age-specific survival estimates from the earlier (mostly 1983-1987 cohorts) and later (mostly 1988-1992 cohorts) periods were compared and considerable reductions were observed in 4th- and 5th-year male survival, and 4th-year female survival. The comparatively low adult survival is suggested as the proximate cause, and food limitation as deduced from the decline in survival of elephant seals with comparatively high energetic demands as the ultimate cause behind the population decline at Marion Island. Although not tied in with the decline of the population, 1987, 1990 and 1993 were identified as high-mortality years.

Estimation of age from stained sections of canine teeth in the Cape fur seal (Arctocephalus pusillus pusillus).

Methods of cutting and staining thin sections of Cape fur seal canines are described. The accuracy of age determination from the histology of the prepared sections and the suitability of the sectioning method is assessed. Known-age canines were used to validate age determination. Longitudinal sections along the midline enable growth layer groups (GLGs) in the dentine to be counted along the length of the canine root. GLGs in the cementum were either absent, or returned estimates of age that were too low. Only GLGs in the dentine of female upper canines could be used to determine age reliably, and only for the < 10 year age-classes.