A photonic complex perceptron for ultrafast data processing.

In photonic neural network a key building block is the perceptron. Here, we describe and demonstrate a complex-valued photonic perceptron that combines time and space multiplexing in a fully passive silicon photonics integrated circuit to process data in the optical domain. A time dependent input bit sequence is broadcasted into a few delay lines and detected by a photodiode. After detection, the phases are trained by a particle swarm algorithm to solve the given task. Since only the phases of the propagating optical modes are trained, signal attenuation in the perceptron due to amplitude modulation is avoided. The perceptron performs binary pattern recognition and few bit delayed XOR operations up to 16 Gbps (limited by the used electronics) with Bit Error Rates as low as [Formula: see text].

Effect of Process Conditions and Colloidal Properties of Cellulose Nanocrystals Suspensions on the Production of Hydrogel Beads.

The influence of the physical, rheological, and process parameters on the cellulose nanocrystal (CNC) drops before and after external gelation in a CaCl2 solution was investigated. The dominant role of the CNC's colloidal suspension properties, such as the viscous force, inertial, and surface tension forces in the fluid dynamics was quantitatively evaluated in the formation of drops and jellified beads. The similarity and difference between the behavior of carbohydrate polymers and rod-like crystallites such as CNC were enlightened. Pump-driven and centrifugally-driven external gelation approaches were followed to obtain CNC hydrogel beads with tunable size and regular shape. A superior morphological control-that is, a more regular shape and smaller dimension of the beads-were obtained by centrifugal force-driven gelation. These results suggest that even by using a simple set-up and a low-speed centrifuge device, the extrusion of a colloidal solution through a small nozzle under a centrifugal field is an efficient approach for the production of CNC hydrogel beads with good reproducibility, control over the bead morphology and size monodispersion.

Surface Heterogeneous Nucleation-Mediated Release of Beta-Carotene from Porous Silicon.

We demonstrate that the release of a poorly soluble molecule from nanoporous carriers is a complex process that undergoes heterogeneous surface nucleation events even under significantly diluted release conditions, and that those events heavily affect the dynamics of release. Using beta-carotene and porous silicon as loaded molecule and carrier model, respectively, we show that the cargo easily nucleates at the pore surface during the release, forming micro- to macroscopic solid particles at the pores surface. These particles dissolve at a much slower pace, compared to the rate of dissolution of pure beta-carotene in the same solvent, and they negatively affect the reproducibility of the release experiments, possibly because their solubility depends on their size distribution. We propose to exploit this aspect to use release kinetics as a better alternative to the induction time method, and to thereby detect heterogenous nucleation during release experiments. In fact, release dynamics provide much higher sensitivity and reproducibility as they average over the entire sample surface instead of depending on statistical analysis over a small area to find clusters.

In vitro toxicity assessment of hydrogel patches obtained by cation-induced cross-linking of rod-like cellulose nanocrystals.

With the purpose of designing active patches for photodynamic therapy of melanoma, transparent and soft hydrogel membranes (HMs) have been fabricated by cation-induced gelation of rod-like cellulose nanocrystals (CNCs) bearing negatively charged carboxylic groups. Na+ , Ca2+ , Mg2+ have been used as cross-linkers of cellulose nanocrystal (CNC). The biosafety of this material and of its precursors has been evaluated in vitro in cell cultures. Morphological changes, cell organelles integrity, and cell survival with the tetrazolium salt reduction (MTT) assay were utilized as tests of cytotoxicity. Preliminary investigation was performed by addition of the hydrogel components to the cell culture medium and by incubations of the CNC-HM in direct and indirect contact with a confluent monolayer of A375 melanoma cells. Direct contact assays suffered from interference of physical stress. Careful evaluation of cytotoxicity was obtained considering the overall picture provided by microscopy and biochemical tests performed with the CNC-HM in indirect contact with two melanoma cell lines (A375, M14) and human fibroblasts. CNCs have been demonstrated to be a safe precursor material and CNC-HMs have a good biocompatibility provided that the excess of cations, in particular of Ca2+ is removed. These results indicate that CNC and can be safely used to fabricate biomedical devices such as transparent hydrogel patches, although attention must be paid to the fabrication procedure.

A self-assembling peptide hydrogel for ultrarapid 3D bioassays.

Biosensing analytical platforms rely on the intimate structure-function relationship of immobilized probes. In this context, hydrogels are appealing semi-wet systems to locally confine biomolecules while preserving their structural integrity and function. Yet, limitations imposed by biomolecule diffusion rates or fabrication difficulties still hamper their broad application. Here, using a self-assembling peptide, a printable and self-adhesive hydrogel was obtained and applied to fabricate arrays of localized bio-functional 3D microenvironments on analytical interfaces. This soft matrix represents a robust and versatile material, allowing fast and selective tuning of analyte diffusion, which is exploited here to run in-gel immunoassays under solution-like conditions in an unprecedented (<10 min) time frame. The developed material overcomes major limitations associated with hydrogels for bioassays, widening the prospects for easy fabrication of multifunctional bio-interfaces for high-throughput, molecular recognition assays.

Anomalous molecular infiltration in graphene laminates.

Graphene laminated (GL) coatings formed by stacked few layer graphene (FLG) nanocrystals were deposited on low-density polyethylene (PE) films by the mechanical rubbing technique. Molecular transport through the bilayer membrane was studied by the gas phase permeation technique by monitoring the CO2, N2 and 2H2 transport fluxes in transient conditions. The results evidenced that the transport exhibited anomalous character. The experimental data could be reproduced assuming that the penetrant concentration in the GL coating, cint(t), reached a saturation value cs following compressed exponential kinetics cint(t) = cs[1 - e-(λrelt)ß]. The relaxation time τrel = 1/λrel showed thermally activated behavior, and its value increased with the kinetic diameter of the penetrant molecules. The critical exponent ß = 1.5 ± 0.1 for CO2 and N2 and ß = 2.0 ± 0.1 for 2H2 did not change with temperature. Positron annihilation lifetime spectroscopy (PALS) analysis indicated that the average cross-section (hg) of the cavities in the GL coating exhibited comparable size to the kinetic diameter (σk) of the penetrant molecules. The results could be explained by assuming that the molecular infiltration in the GL structure occurred in nano-channels having distributed path lengths where the penetrant transport obeyed a configurational diffusion mechanism.

Structure and Properties of DNA Molecules Over The Full Range of Biologically Relevant Supercoiling States.

Topology affects physical and biological properties of DNA and impacts fundamental cellular processes, such as gene expression, genome replication, chromosome structure and segregation. In all organisms DNA topology is carefully modulated and the supercoiling degree of defined genome regions may change according to physiological and environmental conditions. Elucidation of structural properties of DNA molecules with different topology may thus help to better understand genome functions. Whereas a number of structural studies have been published on highly negatively supercoiled DNA molecules, only preliminary observations of highly positively supercoiled are available, and a description of DNA structural properties over the full range of supercoiling degree is lacking. Atomic Force Microscopy (AFM) is a powerful tool to study DNA structure at single molecule level. We here report a comprehensive analysis by AFM of DNA plasmid molecules with defined supercoiling degree, covering the full spectrum of biologically relevant topologies, under different observation conditions. Our data, supported by statistical and biochemical analyses, revealed striking differences in the behavior of positive and negative plasmid molecules.

Study on molecularly imprinted nanoparticle modified microplates for pseudo-ELISA assays.

Nanosized Molecularly Imprinted Polymers (nanoMIPs) are designed artificial nanoreceptors with a predetermined selectivity and specificity for a given analyte, lately proposed as a replacement to antibodies in immunoassays. The nanoMIP-plate preparation based on nanoparticle adsorption was studied with the aim to rationally identify and discuss the critical points in the nanoMIP-assay development, in an example based on the iron homeostasis biomarker hepcidin and hepcidin-specific nanoMIPs (Kd = 9nM). Plates were prepared by deposition and drying of nanoMIP (0.5-4µg/well), or by nanoMIPs co-depositions (proteins, PVA). Rehydration (> 1h) of dry nanoMIP-plates showed the reconstitution of the imprinted binding sites. NanoMIP-plate mechanical stresses (several washings; pipetting) caused nanoMIP desorption (~90%). After 10 washes the quantity of nanoMIP was 0.2µg/well, the imprinted binding sites were ~270 fmol/well, their accessibility the 92%. Co-depositions resulted in higher amount of adsorbed nanomaterial (1.2µg/well), but low accessibility of the imprinted binding sites (2-47%). Tested in a competitive sequential assay, using as competitor horseradish peroxidase conjugate to hepcidin, the nanoMIP-plate permitted to determine hepcidin in serum samples, yet with a narrow dynamic range of response (0.9-10nM). Critical points in the assay were: the instability of the nanoMIP adsorption, which lead to the progressive loss of binding sites/well, and the affinity of the nanoMIP for the analyte (Kd = 9nM), which corresponds to kinetics dissociation constants on the time-scale of the washing lengths (minutes), thus compatible with the release of the bound hepcidin during the washings. The found limits set the conditions to develop a successful nanoMIP-assay: (i) stable microplate derivatization; (ii) maximized number of imprinted binding sites/well; (iii) nanoMIP/analyte equilibrium not perturbed on the time scale of the minutes (i.e. Kd ~ pM).

Optical Study of Diamine Coupling on Carboxyl-Functionalized Mesoporous Silicon.

A functionalization strategy, consisting of a silylation reaction by acrylic acid followed by diamine coupling, preserves and stabilizes the photoluminescence (PL) of porous silicon (pSi) microparticles suspended in ethanol. We found that under the condition of efficient amine coupling, besides the orange emission typical of the native pSi, an emission band in the blue region appears. The investigation of the interaction between pSi and diamine shows that diamine quenches and shifts the orange band meanwhile it induces an increase of the intensity of the blue one. PL lifetimes of the orange and blue bands are in the micro and nano second range, respectively. These values and their wavelength dependence clearly prove that the two bands have different origin: quantum confinement and nitrogen impurities introduced at silicon/silicon oxide interface, respectively. Thus, they can be used to discriminate between the pSi microparticles obtained by silylation, which expose carboxylic groups and the pSi microparticles after the diamine coupling, which bear amine functionalities at the surface. The increase in the stability of the PL emission of pSi in aqueous solution after functionalization, with quantum yields of the order of 1­2%, supports the use in biological systems of these brightly emitting, largely porous microparticles, bearing positive or negative surface charge.

Digital Detection of Exosomes by Interferometric Imaging.

Exosomes, which are membranous nanovesicles, are actively released by cells and have been attributed to roles in cell-cell communication, cancer metastasis, and early disease diagnostics. The small size (30-100 nm) along with low refractive index contrast of exosomes makes direct characterization and phenotypical classification very difficult. In this work we present a method based on Single Particle Interferometric Reflectance Imaging Sensor (SP-IRIS) that allows multiplexed phenotyping and digital counting of various populations of individual exosomes (>50 nm) captured on a microarray-based solid phase chip. We demonstrate these characterization concepts using purified exosomes from a HEK 293 cell culture. As a demonstration of clinical utility, we characterize exosomes directly from human cerebrospinal fluid (hCSF). Our interferometric imaging method could capture, from a very small hCSF volume (20 uL), nanoparticles that have a size compatible with exosomes, using antibodies directed against tetraspanins. With this unprecedented capability, we foresee revolutionary implications in the clinical field with improvements in diagnosis and stratification of patients affected by different disorders.

Nonlinear self-polarization flipping in silicon sub-wavelength waveguides: distortion, loss, dispersion, and noise effects.

We numerically investigate nonlinear self-polarization flipping in a silicon waveguide. We identify specific silicon waveguide geometries that enhance this effect to facilitate its fabrication and experimental demonstration by varying various parameters such as fabrication distortion, waveguide loss, dispersion and laser noise to design the silicon waveguide. In optimized waveguides, we show that nonlinear self-polarization flipping can be observed with few tens of watts peak power pulses with widths as short as 60 ps and laser noise level as large as 7%.

Investigation of non-specific signals in nanoporous flow-through and flow-over based sensors.

Porous materials are ideal hosts to fabricate high sensitivity devices. Their large specific area and the possibility to modify the type and the strength of the matrix-analyte interactions allow the realization of sensors with finely tailored characteristics. In this article, we investigate how mass transport across the nanoporous structure influences the response due to the non-specific signal by comparing flow-through versus flow-over geometries. We observed a systematic overestimation of the sensitivity for porous substrate devices made of closed-ended pores compared with open-ended pore ones. Our analysis shows that such an effect is due to (unbound) analytes or contaminants that remain trapped within the pores and are not removed by rinsing of the sample. This result was verified by measuring similar samples in both flow through and flow over configurations, as well as their residual response after blockage of all their active sites. We also notice that sensors based on free-standing membranes show similar results independent of the fact that mass transport is induced by either an external pressure source or simply by Brownian motions.

Interferometric switching in coupled resonator optical waveguides-based reconfigurable optical device.

Integrated optical devices based on coupled resonator optical waveguides (CROW) for reconfigurable band routing are explored. A reconfiguration principle based on two bus interferometric CROW resonant structures is proposed. This device extends the functionalities of simple add-drop filters, adding more switching features. These new functionalities yield three functional states that comprehend a complete reconfigurability and a 50% splitter mode.

Modeling of slot waveguide sensors based on polymeric materials.

Slot waveguides are very promising for optical sensing applications because of their peculiar spatial mode profile. In this paper we have carried out a detailed analysis of mode confinement properties in slot waveguides realized in very low refractive index materials. We show that the sensitivity of a slot waveguide is not directly related to the refractive index contrast of high and low materials forming the waveguide. Thus, a careful design of the structures allows the realization of high sensitivity devices even in very low refractive index materials (e.g., polymers) to be achieved. Advantages of low index dielectrics in terms of cost, functionalization and ease of fabrication are discussed while keeping both CMOS compatibility and integrable design schemes. Finally, applications of low index slot waveguides as substitute of bulky fiber capillary sensors or in ring resonator architectures are addressed. Theoretical results of this work are relevant to well established polymer technologies.

Optical characterization of a SCISSOR device.

Here, we report on the design, fabrication and characterization of single-channel (SC-) and dual-channel (DC-) side-coupled integrated spaced sequences of optical resonators (SCISSOR) with a finite number (eight) of microring resonators using submicron silicon photonic wires on a silicon-on-insulator (SOI) wafer. We present results on the observation of multiple resonances in the through and the drop port signals of DC-SCISSOR. These result from the coupled resonator induced transparency (CRIT) which appears when the resonator band (RB) and the Bragg band (BB) are nearly coincident. We also observe the formation of high-Q (> 23000) quasi-localized modes in the RB of the drop transmission which appear when the RB and BB are well separated from each other. These multiple resonances and quasi-localized modes are induced by nanometer-scale structural disorders in the dimension of one or more rings. Finally, we demonstrate the tunability of RB (and BB) and localized modes in the DC-SCISSOR by thermo-optical or free-carrier refraction.

Birefringent porous silicon membranes for optical sensing.

In this work anisotropic porous silicon is investigated as a material for optical sensing. Birefringence and sensitivity of the anisotropic porous silicon membranes are thoroughly studied in the framework of Bruggeman model which is extended to incorporate the influence of environment effects, such as silicon oxidation. The membranes were also characterized optically demonstrating sensitivity as high as 1245 nm/RIU at 1500 nm. This experimental value only agrees with the theory when it takes into consideration the effect of silicon oxidation. Furthermore we demonstrate that oxidized porous silicon membranes have optical parameters with long term stability. Finally, we developed a new model to determine the contribution of the main depolarization sources to the overall depolarization process, and how it influences the measured spectra and the resolution of birefringence measurements.

Positronium cooling and emission in vacuum from nanochannels at cryogenic temperature.

High formation yield and a meaningful cooled fraction of positronium below room temperature were obtained by implanting positrons in a silicon target in which well-controlled oxidized nanochannels (5-8 nm in diameter) perpendicular to the surface were produced. We show that by implanting positrons at 7 keV in the target held at 150 K, about 27% of positrons form positronium that escapes into the vacuum. Around 9% of the escaped positronium is cooled by collision with the walls of nanochannels and is emitted with a Maxwellian beam at 150 K. Because positronium quantum confinement limits the minimum achievable positronium energy, the tuning of the nanochannel's size is crucial for obtaining positronium gases in vacuum at very low temperature.

Ferroelectric and ferroelastic domain wall motion in unconstrained Pb(Zr,Ti)O3 microtubes and thin films.

Ferroelectric polarization switching of high aspect ratio (>80:1) PbZr(0.52)Ti(0.48)O(3) (PZT) microtubes with a wall thickness of ~200 nm was investigated. A charge-based technique was used to assess the dielectric and ferroelectric properties of individual mechanically-unconstrained PZT microtubes with interdigitated electrodes. An enhancement in the degree of ferroelastic (non-180 degrees ) domain wall motion was observed in the tubes relative to films of similar thickness on rigid substrates. The dielectric response of the tubes showed a Rayleigh-like ac field dependence over a wide temperature range; the extent of the extrinsic contribution to the dielectric response dropped as the temperature approached 10K, but remained finite. This work demonstrates a general methodology for directly electrically addressing small, unconstrained ferroelectric devices, extending the range of driving fields and temperatures over which these materials can be probed.