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1.
Heliyon ; 9(12): e22712, 2023 Dec.
Article in English | MEDLINE | ID: mdl-38125469

ABSTRACT

In the current study, one new quercetin-based Zn(II) complex [Zn(Qr)(CNNCN)(H2O)2] (Complex 1) which is developed by condensation of quercetin with ZnCl2 in the presence of NaN(CN)2 and Cu(II) complex [Cu(Qr)N3(CH3OH)(H2O)] (complex 2) which is developed by the condensation reaction of quercetin and CuCl2 in presence of NaN3, are thoroughly examined in relation to their use in biomedicine. The results of several spectroscopic studied confirm the structure of both the complexes and the Density Functional Theory (DFT) study helps to optimize the structure of complex 1 and 2. After completion of the identification process, DNA and Human Serum Albumin (HSA) binding efficacy of both the investigated complexes are performed by implementing a long range of biophysical studies and a thorough analysis of the results unveils that complex 1 has better interaction efficacy with the macromolecules than complex 2. The binding efficacy of complex 1 is comparatively higher towards both macromolecules because of its pure groove binding mode during interaction with DNA and the presence of an extra H-bond during connection with HSA. The experimental host-guest binding results is fully validated by molecular docking study. Interestingly complex 1 shows better antioxidant properties than complex 2, as well as quercetin, and it has strong anticancer property with minimal damage to normal cells, which is proved by the MTT assay study. Better DNA and HSA binding efficacy of 1 may be the reason for the better anticancer property of complex 1.

2.
Curr Microbiol ; 80(8): 252, 2023 Jun 24.
Article in English | MEDLINE | ID: mdl-37354374

ABSTRACT

Microbial fuel cells (MFCs) function by using microorganisms to decompose the substrate at the anode, producing electrons and protons. These charges are then transported to the cathode, where electricity is generated. Previous studies have shown their promising probabilities for practical applications. MFCs are praised for their ability to address energy shortages and environmental pollution simultaneously. They have the potential to generate electricity directly from organic substances, reducing energy losses that occur during intermediate conversion steps. The main challenge lies in transitioning these technologies from the laboratory setting to practical systems that can be implemented on a large scale for bioenergy production along with various engineering hurdles. This study focused on investigating the power production potential of a soil-isolated bacterial strain taxonomically classified as Lysinibacillus xylanilyticus nbpp1, which is a relatively new addition to the extensive range of biocatalysts known for their ability to generate electricity. The study analyzed the electrochemical performance of an H-type MFC setup. LB broth was used as the substrate, while aluminum and graphite served as electrode materials. Other parameters, such as Coulombic efficiency, internal resistance, and electrode corrosion rate, were also measured. The MFC produced a high open circuit voltage of 1127 mV and achieved a maximum power density of 6.71 mW/cm2 at a current density of 11.14 mA/cm2. The MFC setup successfully powered LED lamps when connected in a joint circuit, showcasing its potential for practical applications. These findings suggest the promising high electrochemical performance of the MFC system in terms of electricity generation using the specified conditions.


Subject(s)
Bacillaceae , Bioelectric Energy Sources , Bioelectric Energy Sources/microbiology , Electricity , Bacteria/chemistry , Electrodes
3.
ACS Omega ; 8(1): 636-647, 2023 Jan 10.
Article in English | MEDLINE | ID: mdl-36643564

ABSTRACT

A new quercetin-based iron(III) cationic complex [Fe(Qr)Cl(H2O)(MeO)] (complex 1) is created in the current study by condensation of quercetin with ferric chloride in the presence of Et3N. Comprehensive spectroscopic analysis and conductometric measurement are used to pinpoint complex 1. The generated complex's +3-oxidation state has been verified by electron paramagnetic resonance (EPR) research. Density functional theory analysis was used to structurally optimize the structure of complex 1. Before biomedical use, a variety of biophysical studies are implemented to evaluate the binding capacity of complex 1 with DNA and human serum albumin (HSA) protein. The findings of the electronic titration between complex 1 and DNA, as well as the stunning fall in the fluorescence intensities of the HSA and EtBr-DNA/DAPI-DNA domain after complex 1 is gradually added, give us confidence that complex 1 has a strong affinity for both macromolecules. It is interesting to note that the displacement experiment confirms partial intercalation as well as the groove binding mechanism of the title complex with DNA. The time-dependent fluorescence analysis indicates that after interaction with complex 1, HSA will exhibit static quenching. The thermodynamic parameter values in the HSA-complex 1 interaction provide evidence for the hydrophobicity-induced pathway leading to spontaneous protein-complex 1 interaction. The two macromolecules' configurations are verified to be preserved when they are associated with complex 1, and this is done via circular dichroism spectral titration. The molecular docking investigation, which is a theoretical experiment, provides complete support for the experimental findings. The potential of the investigated complex to be an anticancer drug has been examined by employing the MTT assay technique, which is carried out on HeLa cancer cell lines and HEK-293 normal cell lines. The MTT assay results validate the ability of complex 1 to display significant anticancer properties. Finally, by using the AO/PI staining approach, the apoptotic-induced cell-killing mechanism as well as the detection of cell morphological changes has been confirmed.

4.
ACS Omega ; 7(27): 23276-23288, 2022 Jul 12.
Article in English | MEDLINE | ID: mdl-35847281

ABSTRACT

A new versatile azide-bridged polymeric Cu(II) complex, namely, [Cu(L)(µ1,3-N3)]∞ (1), was synthesized utilizing an N,N,O-donor piperidine-based Schiff base ligand (E)-4-bromo-2-((2-(-1-yl)imino)methyl)phenol (HL), obtained via the condensation reaction of 1-(2-aminoethyl) piperidine and 5-bromo salicylaldehyde. The single-crystal X-ray diffraction analysis reveals that complex 1 consists of an end-to-end azido-bridged polymeric network, which is further rationalized with the help of a density functional theory (DFT) study. After routine characterization with a range of physicochemical studies, complex 1 is exploited to evaluate its biomedical potential. Initially, theoretical inspection with the help of a molecular docking study indicated the ability of complex 1 to effectively bind with macromolecules such as DNA and the human serum albumin (HSA) protein. The theoretical aspect was further verified by adopting several spectroscopic techniques. The electronic absorption spectroscopic analysis indicates a remarkable binding efficiency of Complex 1 with both DNA and HSA. The notable fluorescence intensity reduction of the ethidium bromide (EtBr)-DNA adduct, 4',6-diamidino-2-phenylindole (DAPI)-DNA adduct, and HSA after the gradual addition of complex 1 authenticates its promising binding potential with the macromolecules. The retention of the canonical B form of DNA and α form of HSA during the association of complex 1 was confirmed by implementing a circular dichroism spectral study. The association ability of complex 1 with macromolecules further inspired us to inspect its impact on different cell lines such as HeLa (cervical cancer cell), PA1 (ovarian cancer cell), and HEK (normal cell). The dose-dependent and time-dependent in vitro 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay suggests an effective antiproliferative property of complex 1 with low toxicity toward the normal cell line. Finally, the anticancer activity of complex 1 toward carcinoma cell lines was analyzed by nuclear and cellular staining techniques, unveiling the cell death mechanism.

5.
Anal Methods ; 14(28): 2739-2744, 2022 07 21.
Article in English | MEDLINE | ID: mdl-35775440

ABSTRACT

Fluorescein coupled with 3-(aminomethyl)-4,6-dimethylpyridin-2(1H)-one (FAD) was synthesized for the selective recognition of Zn2+ over other interfering metal ions in acetonitrile/aqueous buffer (1 : 1). Interestingly, there was a significant fluorescence enhancement of FAD in association with Zn2+ at 426 nm by strong chelation-induced fluorescence enhancement (CHEF) without interrupting the cyclic spirolactam ring. A binding stoichiometric ratio of 1 : 2 for the ligand FAD with metal Zn2+ was proven by a Jobs plot. However, the cyclic spirolactam ring was opened by hypochlorite (OCl-) as well as oxidative cleavage of the imine bond, which resulted in the emission enhancement of the wavelength at 520 nm. The binding constant and detection limit of FAD towards Zn2+ were determined to be 1 × 104 M-1 and 1.79 µM, respectively, and the detection limit for OCl- was determined as 2.24 µM. We introduced here a dual-mode chemosensor FAD having both the reactive functionalities for the simultaneous detection of Zn2+ and OCl- by employing a metal coordination (Zn2+) and analytes (OCl-) induced chemodosimetric approach, respectively. Furthermore, for the practical application, we studied the fluorescence imaging inside HeLa cells by using FAD, which demonstrated it can be very useful as a selective and sensitive fluorescent probe for zinc.


Subject(s)
Hypochlorous Acid , Zinc , Flavin-Adenine Dinucleotide , Fluorescein , HeLa Cells , Humans , Spectrometry, Fluorescence , Zinc/chemistry
6.
Radiat Oncol J ; 40(1): 66-78, 2022 Mar.
Article in English | MEDLINE | ID: mdl-35368202

ABSTRACT

PURPOSE: DNA polymerase ß (Polß) acts in the base excision repair (BER) pathway. Mutations in DNA polymerase ß (Polß) are associated with different cancers. A variant of Polß with a 97 amino acid deletion (PolßΔ), in heterozygous conditions with wild-type Polß, was identified in sporadic ovarian tumor samples. This study aims to evaluate the gamma radiation sensitivity of PolßΔ for possible target therapy in ovarian cancer treatment. MATERIALS AND METHODS: PolßΔ cDNA was cloned in a GFP vector and transfected in PA1 cells. Stable cells (PA1PolßΔ) were treated with 60Co sourced gamma-ray (0-15 Gy) to investigate their radiation sensitivity. The affinity of PolßΔ with DNA evaluated by DNA protein in silico docking experiments. RESULTS: The result showed a statistically significant (p < 0.05) higher sensitivity towards radiation at different doses (0-15 Gy) and time-point (48-72 hours) for PA1PolßΔ cells in comparison with normal PA1 cells. Ten Gy of gamma radiation was found to be the optimal dose. Significantly more PA1PolßΔ cells were killed at this dose than PA1 cells after 48 hours of treatment via an apoptotic pathway. The in silico docking experiments revealed that PolßΔ has more substantial binding potential towards the dsDNA than wild-type Polß, suggesting a possible failure of BER pathway that results in cell death. CONCLUSION: Our study showed that the PA1PolßΔ cells were more susceptible than PA1 cells to gamma radiation. In the future, the potentiality of ionizing radiation to treat this type of cancer will be checked in animal models.

7.
Int J Biol Macromol ; 168: 537-549, 2021 Jan 31.
Article in English | MEDLINE | ID: mdl-33316341

ABSTRACT

This study aimed to investigate the molecular characterization, antioxidant activity in vitro, cytotoxicity study of an exopolysaccharide isolated from Citrobacter freundii. Firstly, the culture conditions were standardized by the Design of experiments (DoE) based approach, and the final yield of thecrude exopolysaccharide was optimized at 2568 ± 169 mg L-1. One large fraction of exopolysaccharide was obtained from the culture filtrate by size exclusion chromatography and molecular characteristics were studied. A new mannose rich exopolysaccharide (Fraction-I) with average molecular weight ~ 1.34 × 105 Da was isolated. The sugar analysis showed the presence of mannose and glucose in a molar ratio of nearly 7:2 respectively. The structure of the repeating unit in the exopolysaccharide was determined through chemical and 1D/2D- NMR experiments as: Finally, the antioxidant activity, and the cytotoxicity of the exopolysaccharide were investigated and the relationship with molecular properties was discussed as well.


Subject(s)
Antineoplastic Agents/chemistry , Antioxidants/chemistry , Citrobacter freundii/growth & development , Polysaccharides, Bacterial/chemistry , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Antioxidants/isolation & purification , Antioxidants/pharmacology , Carbohydrate Sequence , Cell Proliferation/drug effects , Cell Survival/drug effects , Chromatography, Gel , Citrobacter freundii/chemistry , HeLa Cells , Humans , Hydrolysis , Magnetic Resonance Spectroscopy , Molecular Weight , Polysaccharides, Bacterial/isolation & purification , Polysaccharides, Bacterial/pharmacology
8.
Curr Microbiol ; 77(10): 3125-3135, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32725340

ABSTRACT

An exopolysaccharide (EPS-I) having the molecular weight ~ 2.6 × 105 Da, was isolated from a Zinc resistant strain of Enterococcus faecalis from costal area. The exopolysaccharide consists of D-mannose, D-glucose, and L-fucose in molar ratio of 9:4:1. The monosaccharide units in the EPS-1 were determined through chemical (total acid hydrolysis and methylation analysis) and spectroscopic (FTIR and 1H NMR experiment) analysis. The mannose-rich EPS-1 showed total antioxidant activity (1 mg mL-1 of EPS-I as functional as approximately to 500 ± 5.2 µM of ascorbic acid) and Fe2+ metal ion chelation activity (EC50 = 405.6 µg mL-1) and hydroxyl radical scavenging activity (EC50 = 219.5 µg mL-1). The in vitro cytotoxicity experiment of EPS-I against cervical carcinoma cell line, HeLa cells showed strong cytotoxic effect (LC50 = 267.3 µg mL-1) and at that concentration, it found almost nontoxic against normal healthy cells (HEK-293).


Subject(s)
Antioxidants , Enterococcus faecalis , Antioxidants/pharmacology , HEK293 Cells , HeLa Cells , Humans , Polysaccharides, Bacterial
9.
Int J Biol Macromol ; 162: 1025-1034, 2020 Nov 01.
Article in English | MEDLINE | ID: mdl-32599238

ABSTRACT

A green synthesis of silver nanoparticles was synthesized by AgNO3 with arabinoxylan, isolated from green stem of Andrographis paniculata (Kalmegh). The synthesized Ag NPs-arabinoxylan conjugates were characterized by UV-vis spectroscopy, FE-SEM, TEM, XRD, TGA, EDX, and Zeta potential experiments. The Ag NPs formation was established by the surface plasmon resonance band ~410.25 nm. SEM image showed mostly spherical morphology of Ag NPs. The fcc crystalline nature was identified by XRD, SAED and the size were 24.5 and 25 nm from TEM and XRD analysis respectively. The prepared Ag NPs showed dose-dependent antimicrobial activity against Streptococcus pneumonia, Candida albicans and E. coli. The nanoparciles damage 4% hemolysis to human RBCs at 12.5 µg/mL. MTT assay of Ag NPs showed that half of the cell killed at 10 µg/mL and wound healing assay observed effective inhibition cell proliferation.


Subject(s)
Acanthaceae/chemistry , Anti-Infective Agents , Candida albicans/growth & development , Escherichia coli/growth & development , Metal Nanoparticles/chemistry , Streptococcus pneumoniae/growth & development , Xylans/chemistry , Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Green Chemistry Technology , Silver/chemistry , Silver/pharmacology , Xylans/isolation & purification
10.
Carbohydr Polym ; 222: 114990, 2019 Oct 15.
Article in English | MEDLINE | ID: mdl-31320072

ABSTRACT

A water insoluble ß-glucan (PS), with molecular mass ∼9.16 × 104 Da was isolated from the 4% alkaline extract of an edible mushroom, Pleurotus djamor and found to consist of (1→3)-ß-d-glucopyranosyl moiety. The structure of the PS was elucidated on the basis of total hydrolysis, methylation analysis, periodate oxidation, and NMR experiments (1H, 13C, DQF-COSY, DEPT-135, and HSQC). The structure of the repeating unit of the polysaccharide was established as: →3)-ß-d-Glcp-(1→. The water insoluble ß-glucan showed cytotoxic effect against PA1 cells, where˜50% population was destroyed at 100 µg/mL concentration, and almost all cells at 250 µg/mL concentration. The wound healing assay showed significant anticarcinogenic effect against ovarian carcinoma PA1 cells after 48 h of treatment.


Subject(s)
Antineoplastic Agents/pharmacology , Ovarian Neoplasms/drug therapy , Pleurotus/metabolism , beta-Glucans , Carbohydrate Sequence , Female , Humans , Solubility , Tumor Cells, Cultured , beta-Glucans/chemistry , beta-Glucans/pharmacology
11.
Iran Biomed J ; 22(5): 355-9, 2018 09.
Article in English | MEDLINE | ID: mdl-29524322

ABSTRACT

Background: DNA polymerase ß (pol ß) is a key enzyme of base excision repair pathway. It is a 1-kb gene consisting of 14 exons. Its catalytic part lies between exon 8 and exon 14. Exon 12 has a role in deoxyribonucleotide triphosphate selection for nucleotide transferase activity. Methods: Genomic DNA was isolated from ovarian carcinoma samples. Single strand conformation polymorphism method was used to detect mutation in genomic DNA. Results: Twenty-four patients of the 152 pair of tumor samples (15.8%) exhibited a point mutation (C→G) in position 725 in exon 12, which shifts proline to arginine (P242R). Statistical analysis showed a significant (p < 0.001) relationship between pol ß mutation and the age of detection. Conclusion: This is a newly reported somatic mutation of pol ß in ovarian carcinoma patients from India.


Subject(s)
DNA Polymerase beta/genetics , Exons/genetics , Ovarian Neoplasms/diagnosis , Ovarian Neoplasms/genetics , Point Mutation/genetics , Adult , Aged , Female , Humans , Middle Aged
12.
Org Biomol Chem ; 14(2): 570-576, 2016 Jan 14.
Article in English | MEDLINE | ID: mdl-26510406

ABSTRACT

H2S is shown, for the first time, to play an extraordinary dual role due to its nucleophilicity and reducing property with our single chemosensor, PND [4-(piperidin-1-yl) naphthalene-1,2-dione]. The initial nucleophilic attack via Michael addition (a lower concentration of H2S, blue fluorescence) is followed by the reduction of the 1,2-diketo functionality (a higher concentration of H2S, green fluorescence). This chemosensor, which also shows biological response, is remarkably effective in sensing the same analyte (H2S) at its different concentrations in a relay pathway via a fluorescence "off-on-on" mechanism, and this is also supported by DFT calculation and Cyclic voltammograms.


Subject(s)
Fluorescence , Fluorescent Dyes/chemistry , Hydrogen Sulfide/chemistry , Naphthalenes/chemistry , Electrochemical Techniques , Oxidation-Reduction , Quantum Theory
13.
Asian Pac J Cancer Prev ; 16(18): 8177-86, 2015.
Article in English | MEDLINE | ID: mdl-26745057

ABSTRACT

The present study was aimed at determining the effects of alkylating and oxidative stress inducing agents on a newly identified variant of DNA polymerase beta (polß Δ208-304) specific for ovarian cancer. Pol ß Δ208-304 has a deletion of exons 11-13 which lie in the catalytic part of enzyme. We compared the effect of these chemicals on HeLa cells and HeLa cells stably transfected with this variant cloned into in pcDNAI/neo vector by MTT, colony forming and apoptosis assays. Polß Δ208-304 cells exhibited greater sensitivity to an alkylating agent and less sensitivity towards H2O2 and UV when compared with HeLa cells alone. It has been shown that cell death in Pol ß Δ208-304 transfected HeLa cells is mediated by the caspase 9 cascade. Exon 11 has nucleotidyl selection activity, while exons 12 and 13 have dNTP selection activity. Hence deletion of this part may affect polymerizing activity although single strand binding and double strand binding activity may remain same. The lack of this part may adversely affect catalytic activity of DNA polymerase beta so that the variant may act as a dominant negative mutant. This would represent clinical significance if translated into a clinical setting because resistance to radiation or chemotherapy during the relapse of the disease could be potentially overcome by this approach.


Subject(s)
Alkylating Agents/pharmacology , DNA Polymerase beta/metabolism , Exons/genetics , Hydrogen Peroxide/pharmacology , Ovarian Neoplasms/pathology , Oxidative Stress/drug effects , Sequence Deletion , Apoptosis/drug effects , Blotting, Western , Caspases/genetics , Caspases/metabolism , Cell Proliferation/drug effects , DNA Polymerase beta/genetics , Female , HeLa Cells , Humans , Ovarian Neoplasms/drug therapy , Ovarian Neoplasms/enzymology , Oxidants/pharmacology , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Tumor Cells, Cultured , Ultraviolet Rays
14.
Org Biomol Chem ; 13(7): 2134-9, 2015 Feb 21.
Article in English | MEDLINE | ID: mdl-25530298

ABSTRACT

Our designed and synthesized chemosensor naphthalene based chromenyl derivative (NAC) [1-(3-hydroxy-3 methyl-3H-benzo[f]chromen-2-yl) ethanone] has been used for fast (<30 s, DL = 0.22 ppb) and selective detection of N2H4 by a new way via the chromenyl ring opening followed by the pyrazole ring formation giving a strong blue fluorescence. The DFT study and the real application in different water samples along with the dipstick method in low cost devices have also been performed here. Human lung cancer cells (NCI-H460) have been used for hydrazinolysis of the NAC in vivo system for detection by the appearance of blue fluorescence and also for the MTT assay showing its remarkable cancer sensitivity.


Subject(s)
Chromones/chemistry , Hydrazines/analysis , Lung Neoplasms/chemistry , Naphthols/chemistry , Quantum Theory , Chromones/chemical synthesis , Humans , Lung Neoplasms/pathology , Molecular Structure , Spectrometry, Fluorescence
15.
Z Naturforsch C J Biosci ; 69(1-2): 81-8, 2014.
Article in English | MEDLINE | ID: mdl-24772827

ABSTRACT

Base excision repair (BER) is a key pathway for maintaining genomic stability. A key enzyme in the BER pathway is DNA polymerase beta (polbeta). It has been shown that more than 11% of breast, bladder, esophageal, colon, and gastric cancer samples studied so far exhibit polbeta mutation. A truncated form of polbeta, polbetadelta (exon 11 deletion), identified in a colon tumour sample, exhibited dominant negative activity. Using this polbetadelta as bait, we screened a HeLa cDNA library for any interacting protein(s) in the yeast two-hybrid (Y2H) system. Polbetadelta was cloned into a pGBKT7 vector (pGBKT7-polbetadelta). pGBKT7-polbetadelta was transformed into the yeast strain AH109. Then the cDNA library was co-transformed into AH109/pGBKT7-polbetadelta and screened by the selection procedure. The yeast-purified plasmids were transformed into Escherichia coli. Plasmid DNA was isolated from the colonies, purified, digested with Sma I and Sal I, and the fragments were sequenced. Four positive clones were obtained. Out of these, three proteins were already known to interact with polbeta (XRCC1, MGC5306, and AP endonuclease 1). The only member previously not known to interact with polbeta was phosphatidylinositol glycosylase type S (PIGS). PIGS is a 64-kDa membrane protein, encoded in chromosome 17. The PIGS protein interacts also with wild-type polbeta which was confirmed by co-immunoprecipitation and Western blot analysis. The role of the newly identified protein in the dominant negative function of the variant form of polbeta remains to be seen.


Subject(s)
DNA Polymerase beta/metabolism , Endoplasmic Reticulum/metabolism , Membrane Proteins/metabolism , Two-Hybrid System Techniques , Base Sequence , DNA Primers , Humans
16.
Analyst ; 138(16): 4593-8, 2013 Aug 21.
Article in English | MEDLINE | ID: mdl-23752275

ABSTRACT

A new "naked-eye" and ratiometric fluorescent zinc sensor (TAQ) of carboxamidoquinoline with 2-chloro-N-(quinol-8-yl)-acetamide as a receptor was designed and synthesized. The sensor shows good water solubility and high selectivity for sensing; about a 15-fold increase in fluorescence quantum yield and a 100 nm red-shift of fluorescence emission upon binding Zn²âº in aqueous HEPES buffer solution are observed. The human lung cancer cell line (A549) activity is also demonstrated.


Subject(s)
Biosensing Techniques/methods , Cell Death/physiology , Lung Neoplasms/metabolism , Water/metabolism , Zinc/metabolism , Cell Line, Tumor , Fluorescent Dyes/chemistry , Fluorescent Dyes/metabolism , Humans , Solubility , Spectrometry, Fluorescence/methods , Water/chemistry , Zinc/chemistry
17.
Cancer Biomark ; 11(4): 155-60, 2012.
Article in English | MEDLINE | ID: mdl-23144153

ABSTRACT

BACKGROUND: Base excision repair (BER) is a key pathway for maintaining genomic stability. A key enzyme in the BER pathway is DNA polymerase beta (polß), which removes the deoxyribose phosphate group (dRP) and fills in the gap with a nucleotide after the DNA lesion is excised. It has been shown that more than thirty percent of breast, bladder, esophageal, colon, and gastric cancer samples studied so far have exhibited DNA polymerase beta mutation. AIM: To examine the association between polß polymorphism and ovarian cancer, case control study was performed using one hundred fifty two cancer samples and non-metastatic normal samples from the same patients in Indian population. DESIGN: The polß polymorphism was studied in ovarian carcinoma tissues samples initially by RT-PCR followed by sequencing and then by western blot analysis. RESULT: A new type of variant was detected along with the WT allele (polßΔ _{208-304}). Stage IV samples have shown a significant factor for cancer progression in ovarian cancer patients of India [OR=3.58; 95% CI (1.6-7.9); and p=0.001]. The association study involving serous type and the variant showed a tendency towards ovarian carcinogenesis [OR=1.57; 95% CI (0.8-3.1); p=0.19]. The western blot analysis result indicates that the specific deletion appears to be associated with disease progression. CONCLUSION: The result reveals that this variant form of polß is a predisposing factor for stage IV ovarian cancer samples in Indian population.


Subject(s)
DNA Polymerase beta/genetics , Ovarian Neoplasms/enzymology , Ovarian Neoplasms/genetics , Adult , Aged , Alleles , DNA Polymerase beta/metabolism , DNA Repair , Female , Humans , Middle Aged , Neoplasm Staging , Ovarian Neoplasms/pathology , Survival Analysis , Young Adult
18.
Asian Pac J Cancer Prev ; 13(5): 1999-2002, 2012.
Article in English | MEDLINE | ID: mdl-22901161

ABSTRACT

BACKGROUND: DNA polymerase is a single-copy gene that is considered to be part of the DNA repair machinery in mammalian cells. The encoded enzyme is a key to the base excision repair (BER) pathway. It is evident that pol beta has mutations in various cancer samples, but little is known about ovarian cancer. AIM: Identification of any variant form of polß cDNA in ovarian carcinoma and determination of association between the polymorphism and ovarian cancer risk in Indian patients. We used 152 samples to isolate and perform RT-PCR and sequencing. RESULTS: A variant of polymerase beta (deletion of exon 4-6 and 11-13, comprising of amino acid 63-123, and 208-304) is detected in heterozygous condition. The product size of this variant is 532 bp while wild type pol beta is 1 kb. Our study of association between the variant and the endometrioid type shows that it is a statistically significant factor for ovarian cancer [OR=31.9 (4.12-246.25) with p<0.001]. The association between variant and stage IV patients further indicated risk (χ2 value of 29.7, and OR value 6.77 with 95% CI values 3.3-13.86). The correlation study also confirms the association data (Pearson correlation values for variant/stage IV and variant/endometrioid of 0.44 and 0.39). CONCLUSION: Individuals from this part of India with this type of variant may be at risk of stage IV, endometrioid type ovarian carcinoma.


Subject(s)
Adenocarcinoma, Clear Cell/etiology , Adenocarcinoma, Mucinous/etiology , Cystadenocarcinoma, Serous/etiology , DNA Polymerase beta/genetics , Endometrial Neoplasms/etiology , Ovarian Neoplasms/etiology , Polymorphism, Genetic/genetics , Adenocarcinoma, Clear Cell/pathology , Adenocarcinoma, Mucinous/pathology , Cystadenocarcinoma, Serous/pathology , DNA, Neoplasm/genetics , Endometrial Neoplasms/pathology , Exons/genetics , Female , Humans , India , Mutation/genetics , Neoplasm Staging , Ovarian Neoplasms/pathology , Polymerase Chain Reaction , Prognosis , Risk Factors , Sequence Deletion
19.
Asian Pac J Cancer Prev ; 13(4): 1321-4, 2012.
Article in English | MEDLINE | ID: mdl-22799326

ABSTRACT

BACKGROUND: DNA polymerase beta (polß ) is a key enzyme in the base excision repair pathway. It is 39 kDa protein, with two subunits, one large subunit of 31 kDa having catalytic activity between exon V to exon XIV, and an 8 kDa smaller subunit having single strand DNA binding activity. Exons V to VII have double strand DNA binding activity, whereas exons VIII to XI account for the nucleotidyl transferase activity and exons XII to XIV the dNTP selection activity. AIM: To examine the association between polß polymorphisms and the risk of ovarian cancer, the present case control study was performed using 152 cancer samples and non-metastatic normal samples from the same patients. In this study, mutational analysis of polß genomic DNA was undertaken using primers from exons IX to XIV - the portion having catalytic activity. RESULTS: We detected alteration in DNA polymerase beta by SSCP. Two specific heterozygous point mutations of polß were identified in Exon 9:486, A->C (polymorphism 1; 11.18%) and in Exon 11:676, A->C (polymorphism 2; 9.86%). The correlation study involving polymorphism 1 and 4 types of tissue showed a significant correlation between mucinous type with a Pearson correlation value of 4.03 (p=0.04). The association among polymorphism 2 with serous type and stage IV together have shown Pearson χ2 value of 3.28 with likelihood ratio of 4.4 (p=0.07) with OR =2.08 (0.3- 14.55). This indicates that there is a tendency of correlation among polymorphism 2, serous type and stage IV, indicating a risk factor for ovarian cancer. CONCLUSION: Hence, the results indicate that there is a tendency for polß polymorphisms being a risk factor for ovarian carcinogenesis in India.


Subject(s)
Carcinoma/genetics , Carcinoma/pathology , DNA Polymerase beta/genetics , Neoplasms, Cystic, Mucinous, and Serous/genetics , Neoplasms, Cystic, Mucinous, and Serous/pathology , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , Adult , Aged , Case-Control Studies , Confidence Intervals , DNA Mutational Analysis , Exons , Female , Humans , India , Likelihood Functions , Middle Aged , Neoplasm Staging , Odds Ratio , Point Mutation , Polymorphism, Genetic , Young Adult
20.
Carcinogenesis ; 28(6): 1356-63, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17166880

ABSTRACT

DNA polymerase beta (polbeta) is a major contributor to mammalian DNA damage repair through its gap-filling DNA synthesis and 5'-deoxyribose phosphate lyase activities. In this way, polbeta plays pivotal roles in the repair of oxidative DNA damage, replication, embryonic survival, neuronal development, meiosis, apoptosis and telomere function. A 36 kDa truncated polbetaDelta protein is expressed in human colorectal, breast, lung and renal carcinomas, but not in normal matched tissues. Interestingly, a binary protein-protein complex of polbetaDelta and X-ray cross-complementing group 1 acts as dominant-negative mutant. In this study, the potential tumorigenic activity of polbetaDelta was examined in nude and transgenic mouse models. Mouse embryonic fibroblasts (MEFs) expressing polbetaDelta in the absence of endogenous polbeta exhibited increased susceptibility to N-methyl-N-nitrosourea (MNU)-induced morphological transformation as compared with cells expressing wild-type (WT) polbeta. This was accompanied by reduced gap-filling DNA synthesis activity. Anchorage-independent transformed cells derived from polbetaDelta-expressing MEFs induced 100% tumor occurrence in nude mice. To support these data, we established transgenic mice expressing polbetaDelta specifically in the mammary glands from a whey acidic protein promoter-driven transgene. This is the first report of transgenic mice with tissue-specific expression of polbetaDelta. MNU-induced tumor formation was analyzed in transgenic mice expressing polbetaDelta together with endogenous WT polbeta in their mammary glands and in normal control mice expressing only WT polbeta. The latent period of tumor appearance was markedly shorter and tumor incidence was significantly higher in transgenic animals than in control animals treated under the same conditions. These results indicate that cells expressing the mutant polbetaDelta display an enhanced sensitivity to MNU that probably underlies an increased susceptibility to tumorigenesis.


Subject(s)
DNA Polymerase beta/genetics , Mammary Glands, Animal/enzymology , Mammary Neoplasms, Experimental/enzymology , Mammary Neoplasms, Experimental/genetics , Animals , Cattle , Cell Line, Transformed , DNA Polymerase beta/biosynthesis , DNA Polymerase beta/deficiency , Female , Mammary Neoplasms, Experimental/chemically induced , Methylnitrosourea/administration & dosage , Mice , Mice, Inbred BALB C , Mice, Knockout , Mice, Nude , Mice, Transgenic
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