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1.
Plant Cell Rep ; 30(12): 2243-54, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21830130

ABSTRACT

Heading date in rice is an important agronomic trait controlled by several genes. In this study, flowering time of variety Dianjingyou 1 (DJY1) was earlier than a near-isogenic line (named NIL) carried chromosome segment from African rice on chromosome 3S, when grown in both long-day (LD) and short-day (SD) conditions. By analyzing a large F2 population from NIL × DJY1, the locus DTH3 (QTL for days to heading on chromosome 3) controlling early heading date in DJY1 was fine mapped to a 64-kb segment which contained only one annotated gene, a MIKC-type MADS-box protein. We detected a 6-bp deletion and a single base substitution in the C-domain by sequencing DTH3 in DJY1 compared with dth3 in NIL, and overexpression of DTH3 caused early flowering in callus. Quantitative real-time PCR revealed that the transcript level of dth3 in NIL was lower than that DTH3 in DJY1 in both LD and SD conditions. The Early heading date 1 (Ehd1) which promotes the RFT1, was up-regulated by DTH3 in both LD and SD conditions. Based on Indel and dCAPs marker analysis, the dth3 allele was only present in African rice accessions. A phylogenetic analysis based on microsatellite genotyping suggested that African rice had a close genetic relationship to O. rufipogon and O. latifolia, and was similar to japonica cultivars. DTH3 affected flowering time and had no significant effect on the main agronomic traits.


Subject(s)
Chromosome Mapping , Flowers/physiology , Oryza/genetics , Plant Proteins/metabolism , Base Sequence , DNA, Plant/genetics , Down-Regulation , Flowers/genetics , Gene Expression Regulation, Plant , Microsatellite Repeats , Molecular Sequence Data , Oryza/metabolism , Oryza/physiology , Photoperiod , Phylogeny , Plant Proteins/genetics , Quantitative Trait Loci
2.
Planta ; 233(3): 485-94, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21082325

ABSTRACT

Hybrid sterility hinders the exploitation of the heterosis displayed by japonica × indica rice hybrids. The variation in pollen semi-sterility observed among hybrids between the japonica recipient cultivar and each of two sets of chromosome segment substitution lines involving introgression from an indica cultivar was due to a factor on chromosome 5 known to harbor the gene S24. S24 was fine mapped to a 42 kb segment by analyzing a large F(2) population bred from the cross S24-NIL × Asominori, while the semi-sterility shown by the F(1) hybrid was ascribable to mitotic failure at the early bicellular pollen stage. Interestingly, two other pollen sterility genes (f5-Du and Sb) map to the same region (Li et al. in Chin Sci Bull 51:675-680, 2006; Wang et al. in Theor Appl Genet 112:382-387, 2006), allowing a search for candidate genes in the 6.4 kb overlap between the three genes. By sequencing the overlapped fragment in wild rice, indica cultivars and japonica cultivars, a protein ankyrin-3 encoded by the ORF2 was identified as the molecular base for S24. A cultivar Dular was found to have a hybrid-sterility-neutral allele, S24-n, in which an insertion of 30 bp was confirmed. Thus, it was possible to add one more case of molecular bases for the hybrid sterility. No gamete abortion is caused on heterozygous maternal genotype with an impaired sequence from the hybrid-sterility-neutral genotype. This result will be useful in understanding of wide compatibility in rice breeding.


Subject(s)
Genes, Plant/genetics , Hybridization, Genetic/genetics , Oryza/genetics , Plant Infertility/genetics , Pollen/genetics , Chromosome Mapping , Gene Expression Regulation, Plant , Genotype , Mutagenesis, Insertional , Oryza/physiology , Phenotype , Pollen/classification , Pollen/physiology , Polymorphism, Genetic/genetics
3.
J Phys Chem B ; 112(49): 15588-95, 2008 Dec 11.
Article in English | MEDLINE | ID: mdl-19367947

ABSTRACT

Helical and nonhelical shell structures of Fe-Al alloy nanowires are obtained using molecular dynamics (MD) and density functional theory (DFT) calculations. The electrical transport properties of alloy nanowires are investigated and compared with those of pure metallic aluminum and iron nanowires. The calculations indicate that the conductance of the Fe-Al alloy nanowire is less than that of the pure Al or Fe nanowires. The results show that the conductance of a carbon-coated Fe-Al alloy nanowire (28,7) is significantly larger than that of Fe-Al alloy nanowire. The difference in the electrical behavior of the Fe-Al alloy nanowire and the carbon-coated structure can be attributed to the two interfering pathways between the CNT and the alloy nanowire. The nonlinear feature of the current-voltage (I-V) for all alloy nanowires suggests that it does not follow the Ohmic pattern.

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