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1.
Sci Rep ; 11(1): 15015, 2021 07 22.
Article in English | MEDLINE | ID: mdl-34294818

ABSTRACT

Circle-line drawing paradigm is used to study bimanual coupling. In the standard paradigm, subjects are asked to draw circles with one hand and lines with the other hand; the influence of the concomitant tasks results in two "elliptical" figures. Here we tested whether proprioceptive information evoked by muscle vibration inducing a proprioceptive illusion (PI) of movement at central level, was able to affect the contralateral hand drawing circles or lines. A multisite 80 Hz-muscle vibration paradigm was used to induce the illusion of circle- and line-drawing on the right hand of 15 healthy participants. During muscle vibration, subjects had to draw a congruent or an incongruent figure with the left hand. The ovalization induced by PI was compared with Real and Motor Imagery conditions, which already have proved to induce bimanual coupling. We showed that the ovalization of a perceived circle over a line drawing during PI was comparable to that observed in Real and Motor Imagery condition. This finding indicates that PI can induce bimanual coupling, and proprioceptive information can influence the motor programs of the contralateral hand.


Subject(s)
Brain/physiology , Proprioception/physiology , Analysis of Variance , Cognition , Female , Humans , Male , Motor Activity , Psychomotor Performance
2.
Cereb Cortex Commun ; 1(1): tgaa065, 2020.
Article in English | MEDLINE | ID: mdl-34296128

ABSTRACT

Long-term experience with a tool stably enlarges peripersonal space (PPS). Also, gained experience with a tool modulates internal models of action. The aim of this work was to understand whether the familiarity with a tool influences both PPS and motor representation. Toward this goal, we tested in 13 expert fencers through a multisensory integration paradigm the embodiment in their PPS of a personal (pE) or a common (cE) épée. Then, we evaluated the primary motor cortex excitability of proximal (ECR) and distal (APB) muscles during a motor imagery (MI) task of an athletic gesture when athletes handled these tools. Results showed that pE enlarges subjects' PPS, while cE does not. Moreover, during MI, handling tools increased cortical excitability of ECR muscle. Notably, APB's cortical excitability during MI only increased with pE as a function of its embodiment in PPS. These findings indicate that the familiarity with a tool specifically enlarges PPS and modulates the cortical motor representation of those muscles involved in the haptic contact with it.

3.
Biomed Res Int ; 2018: 5095673, 2018.
Article in English | MEDLINE | ID: mdl-30420965

ABSTRACT

The present study aimed to evaluate the effects of two types of 9-month adapted physical activity (APA) program, based on a muscle reinforcement training and a postural training, respectively, on muscle mass, muscle strength, and static balance in moderate sarcopenic older women. The diagnosis of sarcopenia was done in accordance with measurable variables and cut-off points suggested by the European Working Group on Sarcopenia in Older People (EWGSOP). Seventy-two participants were randomly assigned to two groups: the muscle reinforcement training group (RESISTANCE) (n=35; 69.9 ± 2.7 years) and the postural training group (POSTURAL) (n=37; 70.0±2.8 years). Body composition, muscle mass, skeletal muscle mass index (SMI), and handgrip strength (HGS) were evaluated for sarcopenia assessment, whereas Sway Path, Sway Area, Stay Time, and Spatial Distance were evaluated for static balance assessment. Sixty-six participants completed the study (RESISTANCE group: n=33; POSTURAL group: n=33). Significant increases of muscle mass, SMI, and handgrip strength values were found in the RESISTANCE group, after muscle reinforcement program. No significant differences appeared in the POSTURAL group, after postural training. Furthermore, RESISTANCE group showed significant improvements in static balance parameters, whereas no significant differences appeared in the POSTURAL group. On the whole, the results of this study suggest that the APA program based on muscle reinforcement applied on moderate sarcopenic older women was able to significantly improve muscle mass and muscle strength, and it was also more effective than the applied postural protocol in determining positive effects on static balance.


Subject(s)
Exercise Therapy , Muscle Strength/physiology , Postural Balance/physiology , Resistance Training , Sarcopenia/therapy , Aged , Exercise/physiology , Female , Hand Strength/physiology , Humans , Muscle, Skeletal/physiology , Sarcopenia/physiopathology
4.
Cell Death Differ ; 21(10): 1522-34, 2014 Oct.
Article in English | MEDLINE | ID: mdl-24926617

ABSTRACT

The increasing number of genome-wide transcriptome analyses focusing on p53-induced cellular responses in many cellular contexts keeps adding to the already numerous p53-regulated transcriptional networks. To investigate post-transcriptional controls as an additional dimension of p53-directed gene expression responses, we performed a translatome analysis through polysomal profiling on MCF7 cells upon 16 hours of doxorubicin or nutlin-3a treatment. The comparison between the transcriptome and the translatome revealed a considerable level of uncoupling, characterized by genes whose transcription variations did not correlate with translation variations. Interestingly, uncoupled genes were associated with apoptosis, DNA and RNA metabolism and cell cycle functions, suggesting that post-transcriptional control can modulate classical p53-regulated responses. Furthermore, even for well-established p53 targets that were differentially expressed both at the transcriptional and translational levels, quantitative differences between the transcriptome, subpolysomal and polysomal RNAs were evident. As we searched mechanisms underlying gene expression uncoupling, we identified the p53-dependent modulation of six RNA-binding proteins, where hnRNPD (AUF1) and CPEB4 are direct p53 transcriptional targets, whereas SRSF1, DDX17, YBX1 and TARDBP are indirect targets (genes modulated preferentially in the subpolysomal or polysomal mRNA level) modulated at the translational level in a p53-dependent manner. In particular, YBX1 translation appeared to be reduced by p53 via two different mechanisms, one related to mTOR inhibition and the other to miR-34a expression. Overall, we established p53 as a master regulator of translational control and identified new p53-regulated genes affecting translation that can contribute to p53-dependent cellular responses.


Subject(s)
Apoptosis/genetics , Doxorubicin/pharmacology , Imidazoles/pharmacology , Peptide Chain Elongation, Translational/physiology , Piperazines/pharmacology , Tumor Suppressor Protein p53/genetics , Cell Cycle/genetics , Cell Line, Tumor , DEAD-box RNA Helicases/genetics , DNA/metabolism , DNA-Binding Proteins/genetics , Gene Expression Profiling , Gene Expression Regulation , Gene Regulatory Networks , Heterogeneous Nuclear Ribonucleoprotein D0 , Heterogeneous-Nuclear Ribonucleoprotein D/genetics , Humans , MCF-7 Cells , Nuclear Proteins/genetics , RNA/metabolism , RNA Interference , RNA, Messenger/biosynthesis , RNA, Small Interfering , RNA-Binding Proteins/genetics , Serine-Arginine Splicing Factors , Y-Box-Binding Protein 1/genetics
5.
Neuroscience ; 265: 196-203, 2014 Apr 18.
Article in English | MEDLINE | ID: mdl-24508812

ABSTRACT

The present study tested whether and how motor experience with a specific tool affects motor representation of a specific movement. To this aim, we considered a group of expert tennis players and a control group of athletic individuals without tennis experience. Participants were asked to execute 20 single forehands into the wall with a tennis racket (movement execution - ME) and, afterward, to produce a kinesthetic image of themselves while executing the same movements (motor imagery - MI). During MI participants handled one of the following tools: a tennis racket, a tennis-like racket and an umbrella. Results showed that the duration of the real and the imagined movements were almost similar when participants of both groups held the tennis rackets. In contrast, when tennis players handled the tools not specific for tennis the duration of the imagined movements increased significantly compared to the MI duration with a tennis racket. On the opposite, the handled tool did not modulate MI performances of the control group. In conclusion, this study showed that motor representation of subjects who developed motor skills associated to tool-use is reliant on the object used to practice movements. This finding suggests that, although MI mainly relies on the activity of cortical motor regions, non-motor information - as the use of the tool to practice movement - strongly affects the MI performance.


Subject(s)
Imagination , Psychomotor Performance , Adult , Athletes/psychology , Female , Humans , Male , Motor Activity , Young Adult
6.
Neuroscience ; 222: 58-68, 2012 Oct 11.
Article in English | MEDLINE | ID: mdl-22813998

ABSTRACT

This study aimed to better characterize the sensorimotor mechanisms underlying motor resonance, namely the relationship between motion perception and movement production in patients suffering from Alzheimer's disease (AD). This work first gives a kinematic description of AD patients' upper limb movements, then it presents a simple paradigm in which a dot with different velocities is moved in front of the participant who is instructed to point to its final position when it stopped. AD patients' actions, as well as healthy elderly participants, were similarly influenced by the dot velocity, suggesting that motor resonance mechanisms are not prevented by pathology. In contrast, only patients had anticipatory motor response: i.e. they started moving before the end of the stimulus motion, unlike what was requested by the experimenter. While the automatic imitation of the stimulus suggests an intact ability to match the internal motor representations with that of the visual model, the uncontrolled motion initiation would indicate AD patients' deficiency to voluntarily inhibit response production. These findings might open new clinical perspectives suggesting innovative techniques in training programs for people with dementia. In particular, the preservation of the motor resonance mechanisms, not dependent on conscious awareness, constitutes an intact basis upon which clinicians could model both physical and cognitive interventions for healthy elderly and AD patients. Furthermore, the evaluation of the inhibitory functions, less sensitive to the level of education than other methods, might be useful for screening test combined with the traditional AD techniques. However, further investigations to understand if this feature is specific to AD or is present also in other neurodegenerative diseases are needed.


Subject(s)
Alzheimer Disease/psychology , Movement/physiology , Aged , Aged, 80 and over , Arm/physiology , Biomechanical Phenomena , Cognition/physiology , Data Interpretation, Statistical , Executive Function/physiology , Female , Humans , Inhibition, Psychological , Linear Models , Male , Neuropsychological Tests , Photic Stimulation , Psychomotor Performance/physiology
7.
Rev. bras. farmacogn ; 21(5): 856-863, Sept.-Oct. 2011. ilus, tab
Article in English | LILACS | ID: lil-600961

ABSTRACT

In order to define the phytotoxic potential of Salvia species a database was developed for fast and efficient data collection in screening studies of the inhibitory activity of Salvia exudates on the germination of Papaver rhoeas L. and Avena sativa L.. The structure of the database is associated with the use of algorithms for calculating the usual germination indices reported in the literature, plus the newly defined indices (Weighted Average Damage, Differential Weighted Average Damage, Germination Weighted Average Velocity) and other variables usually recorded in experiments of phytotoxicity (LC50, LC90). Furthermore, other algorithms were designed to calculate the one-way ANOVA followed by Duncan's multiple range test to highlight automatically significant differences between the species. The database model was designed in order to be suitable also for the development of further analysis based on the artificial neural network approach, using Self-Organising Maps (SOM).

8.
Int J Antimicrob Agents ; 37(2): 129-34, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21163629

ABSTRACT

In this study, demethylfruticuline A (dfA) and fruticuline A (fA), two quinones representing the major diterpenoid components of the exudate produced by the aerial parts of Salvia corrugata, were assessed for their ability to modify surface characteristics, such as hydrophobicity, and to inhibit synthesis of biofilm in vitro by multiresistant Staphylococcus aureus, Staphylococcus epidermidis and Enterococcus faecalis. Five strains of S. aureus (three meticillin-resistant and two meticillin-susceptible), five strains of S. epidermidis (four meticillin-resistant and one meticillin-susceptible) and eight vancomycin-resistant E. faecalis, all recently isolated from clinical specimens and capable of slime production, were studied. fA decrease by at least two-fold the hydrophobic properties of the S. aureus cell membrane but did not affect S. epidermidis or E. faecalis. Biofilm formation on polystyrene plates was quantified spectrophotometrically by established methodologies. Inhibition of biofilm formation was also confirmed by the Congo red agar plate assay. dfA and fA were more effective against S. aureus strains (>70% effect at subinhibitory concentrations) than against S. epidermidis in inhibiting slime synthesis. Against E. faecalis, dfA at subinhibitory concentration induced an inhibition of biofilm production of ca. 60%; fA was less active and more strain-dependent. Moreover, the two compounds were shown to possess chelating activity on divalent and trivalent metal cations. Interactions of fA and dfA with bacteria could be very complex, possibly being species-specific, and could depend not only on inhibition of exopolysaccharide synthesis but also on their chelating activity and on changes in the microorganism's surface, including cell hydrophobicity.


Subject(s)
Biofilms/drug effects , Diterpenes/pharmacology , Enterococcus faecalis/drug effects , Salvia/chemistry , Staphylococcus aureus/drug effects , Staphylococcus epidermidis/drug effects , Anti-Bacterial Agents/pharmacology , Biofilms/growth & development , Chelating Agents/metabolism , Diterpenes/isolation & purification , Drug Resistance, Multiple, Bacterial , Enterococcus faecalis/physiology , Humans , Microbial Sensitivity Tests , Staphylococcus aureus/physiology , Staphylococcus epidermidis/physiology
9.
Food Chem Toxicol ; 47(8): 2092-6, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19497346

ABSTRACT

The effects of 3,4-secoisopimar-4(18),7,15-trien-3-oic acid, a diterpenoid isolated from Salvia cinnabarina, were evaluated in the Ames test on Salmonella typhimurium TA98 and TA100 and on Escherichia coli WP2uvrA, in presence and in absence of the metabolic activation system. The secoisopimarane diterpenoid not only showed to be devoid of mutagenic activity, but significantly inhibited the effect of some known mutagens, in all strains tested. The reduction of the number of chemically-induced revertant colonies reached the value of 92.2% against 2-aminoanthracene, 59.6% against 2-nitrofluorene, 50.9% against sodium azide and 39.9% against methyl methane sulfonate. It is hypothesized that the secoisopimarane diterpenoid acts by aspecific mechanisms, by alterating the cell permeability thus blocking the mutagen adsorption across the bacterial membrane, or by chemical or enzymatic inhibition of the mutagens.


Subject(s)
Antimutagenic Agents/pharmacology , Bacteria/genetics , Diterpenes/chemistry , Salvia/chemistry , Animals , Bacteria/drug effects , Cell Survival/drug effects , Culture Media , Cytochrome P-450 Enzyme System/metabolism , Diterpenes/pharmacology , In Vitro Techniques , Mutagenicity Tests , Rats , Solubility
10.
Phys Rev Lett ; 102(1): 010404, 2009 Jan 09.
Article in English | MEDLINE | ID: mdl-19257173

ABSTRACT

We present the first complete optimization of quantum tomography, for states, positive operator value measures, and various classes of transformations, for arbitrary prior ensemble and arbitrary representation, giving corresponding feasible experimental schemes in terms of random Bell measurements.

11.
Pharmazie ; 59(4): 309-11, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15125580

ABSTRACT

From the exudate of Salvia wagneriana Polak, beside the known ursolic acid, two pentaoxygenated triterpenoids were isolated. Their structures were determined as 3-oxo-11alpha,19beta,20,22beta-tetrahydroxy-lupane (1) and 3beta,11alpha,19beta,20,22beta-pentahydroxy-lupane (2) using a combination of one- and two-dimensional NMR techniques.


Subject(s)
Salvia/chemistry , Triterpenes/chemistry , Chromatography, Thin Layer , Magnetic Resonance Spectroscopy , Poland , Spectrophotometry, Infrared
12.
Carbohydr Res ; 336(4): 283-90, 2001 Dec 07.
Article in English | MEDLINE | ID: mdl-11728396

ABSTRACT

In the framework of a project aimed at generating heparin-like sulfation patterns and biological activities in biotechnological glycosaminoglycans, different approaches have been considered for simulating the alpha(1-->4)-linked 2-O-sulfated L-iduronic acid (IdoA2SO(3))-->N,6-O-sulfated D-glucosamine (GlcNSO(3)6SO(3)) disaccharide sequences prevalent in mammalian heparins. Since the direct approach of sulfating totally O-desulfated heparins, taken as model compounds for C-5-epimerized sulfaminoheparosan (N-deacetylated, N-sulfated Escherichia coli K5 polysaccharide), preferentially afforded heparins O-sulfated at C-3 instead than at C-2 of the iduronate residues, leading to products with low anticoagulant activities, the problem of re-generating a substantial proportion of the original IdoA2SO(3) residues was circumvented by performing controlled solvolytic desulfation (with 9:1 v/v DMSO-MeOH) of extensively sulfated heparins. The order of desulfation of major residues of heparin GlcN and IdoA and of the minor one D-glucuronic acid was: GlcNSO(3)>GlcN6SO(3)>IdoA3SO(3) congruent with GlcA2SO(3) congruent with GlcN3SO(3)>IdoA2SO(3) congruent with GlcA3SO(3). Starting from a 'supersulfated' low-molecular weight heparin, we obtained products with up to 40% of iduronate residues O-sulfated exclusively at C-2 and up to 40% of their glucosamine residues O-sulfated at both C-6 and C-3. Upon re-N-sulfation, these products displayed an in vitro antithrombotic activity (expressed as anti-factor Xa units) comparable with those of current low-molecular weight heparins.


Subject(s)
Anticoagulants/chemical synthesis , Factor Xa Inhibitors , Glucosamine/analogs & derivatives , Glucosamine/chemical synthesis , Heparin/chemistry , Animals , Anticoagulants/chemistry , Anticoagulants/pharmacology , Glucosamine/chemistry , Heparin/pharmacology , Humans , Kinetics , Magnetic Resonance Spectroscopy , Structure-Activity Relationship , Sulfates/chemistry , Sulfates/pharmacology
13.
Arzneimittelforschung ; 51(10): 806-13, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11715633

ABSTRACT

Several preparations of low molecular weight heparins (LMWHs) obtained by physical depolymerisation (irradiation with gamma-rays) of pig mucosal heparin have been characterised by mono- and two-dimensional NMR spectroscopy. Integration of typical 1H- and 13C-NMR signals provided a useful quantification of their sulfation pattern. The availability of the corresponding parent heparins showed that the original structure (including that of the active site for antithrombin, as also confirmed by affinity chromatography) had not been significantly modified by the depolymerisation procedure. This process involves only a slight decrease of undersulfated sequences. A peculiarity of gamma-LMWH is the absence of the 'linkage region', commonly present in unmodified heparins and most LMWHs.


Subject(s)
Heparin, Low-Molecular-Weight/chemistry , Heparin, Low-Molecular-Weight/radiation effects , Animals , Chromatography, Affinity , Factor Xa/chemistry , Gamma Rays , Gastric Mucosa/chemistry , Humans , Magnetic Resonance Spectroscopy , Molecular Weight , Reproducibility of Results , Swine
14.
Semin Thromb Hemost ; 27(5): 473-82, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11668416

ABSTRACT

The sulfation patterns of pig and bovine mucosal commercial heparin preparations can be characterized and distinguished from each other easily by analysis of their monodimensional proton and carbon nuclear magnetic resonance ((1)H and (13)C-NMR) spectra. NMR spectroscopy can detect and quantify signals associated with major sequences as well as with minor residues such as the typical ones associated with the antithrombin (AT) binding sequence and the "linkage region." Contaminants arising from industrial preparation processes are also detectable.


Subject(s)
Heparin/chemistry , Magnetic Resonance Spectroscopy/methods , Animals , Carbohydrate Sequence , Carbon Isotopes , Cattle , Drug Contamination , Glycosaminoglycans/analysis , Glycosaminoglycans/chemistry , Heparin/analysis , Protons , Swine
15.
Biochem J ; 359(Pt 2): 265-72, 2001 Oct 15.
Article in English | MEDLINE | ID: mdl-11583572

ABSTRACT

The interaction, in aqueous solution, of the synthetic pentasaccharide AGA*IA(M) (GlcN,6-SO(3)alpha 1-4GlcA beta 1-4GlcN,3,6-SO(3)alpha 1-4IdoA,2-SO(3)alpha 1-4GlcN,6-SO(3)alpha OMe; where GlcN,6-SO(3) is 2-deoxy-2-sulphamino-alpha-D-glucopyranosyl 6-sulphate, IdoA is l-iduronic acid and IdoA2-SO(3) is L-iduronic acid 2-sulphate), which exactly reproduces the structure of the specific binding sequence of heparin and heparan sulphate for antithrombin III, has been studied by NMR. In the presence of antithrombin there were marked changes in the chemical shifts and nuclear Overhauser effects (NOEs), compared with the free state. On the basis of the optimized geometry of the pentasaccharide the transferred NOEs were interpreted with full relaxation and conformational exchange matrix analysis. An analysis of the three-dimensional structures of the pentasaccharide in the free state, and in the complex, revealed the binding to be accompanied by dihedral angle variation at the A-G and I-A(M) (where G, I, A and A(M) are beta-d-glucuronic acid, 2-O-sulphated alpha-L-iduronic acid, N,6-O-sulphated alpha-D-glucosamine and the alpha-methyl-glycoside of A respectively) glycosidic linkages. Evidence is also provided that the protein drives the conformation of the 2-O-sulphated iduronic acid residue towards the skewed (2)S(0) form.


Subject(s)
Antithrombin III/metabolism , Heparin/chemistry , Heparin/metabolism , Oligosaccharides/chemistry , Oligosaccharides/metabolism , Antithrombin III/chemistry , Binding Sites , Carbohydrate Conformation , Carbohydrate Sequence , In Vitro Techniques , Macromolecular Substances , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Conformation , Solutions
16.
Planta Med ; 67(2): 153-5, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11301863

ABSTRACT

From the leaf surface exudate of the aerial parts of Salvia cinnabarina a new secoisopimarane diterpenoid with a non-specific spasmolytic activity on histamine-, acetylcholine-, and barium chloride-induced contractions in the isolated guinea-pig ileum was obtained. The IC50 value obtained was comparable with that obtained for papaverine. The structure of 3,4-secoisopimara-4(18),7,15-triene-3-oic acid was established by 1D and 2D NMR spectroscopic techniques.


Subject(s)
Diterpenes/isolation & purification , Parasympatholytics/isolation & purification , Plants, Medicinal/chemistry , Acetylcholine/metabolism , Animals , Diterpenes/pharmacology , Guinea Pigs , Histamine/metabolism , Ileum/drug effects , In Vitro Techniques , Lamiaceae , Magnetic Resonance Spectroscopy , Male , Molecular Structure , Papaverine/pharmacology , Parasympatholytics/pharmacology , Plant Leaves/chemistry
17.
Eur J Biochem ; 261(3): 789-801, 1999 May.
Article in English | MEDLINE | ID: mdl-10215897

ABSTRACT

A complex of the synthetic tetrasaccharide AGA*IM [GlcN, 6-SO3-alpha(1-4)-GlcA-beta(1-4)-GlcN,3, 6-SO3-alpha(1-4)-IdoA-alphaOMe] and the plasma protein antithrombin has been studied by NMR spectroscopy. 1H and 13C chemical shifts, three-bond proton-proton (3JH-H) and one-bond proton-carbon coupling constants (1JC-H) as well as transferred NOEs and rotating frame Overhauser effects (ROEs) were monitored as a function of the protein : ligand molar ratio and temperature. Considerable changes were observed at both 20 : 1 and 10 : 1 ratios (AGA*IM : antithrombin) in 1H as well as 13C chemical shifts. The largest changes in 1H chemical shifts, and the linewidths, were found for proton resonances (A1, A2, A6, A6', A1*, A2*, A3*, A4*) in GlcN, 6-SO3 and GlcN,3,6-SO3 units, indicating that both glucosamine residues are strongly involved in the binding process. The changes in the linewidths in the IdoA residue were considerably smaller than those in other residues, suggesting that the IdoA unit experienced different internal dynamics during the binding process. This observation was supported by measurements of 3JH-H and 1JC-H. The magnitude of the three-bond proton-proton couplings (3JH1-H2 = 2.51 Hz and 3JH4-H5 = 2.23 Hz) indicate that in the free state an equilibrium exists between 1C4 and 2S0 conformers in the ratio of approximately 75 : 25. The chair form appears the more favourable in the presence of antithrombin, as inferred from the magnitude of the coupling constants. In addition, two-dimensional NOESY and ROESY experiments in the free ligand, as well as transferred NOESY and ROESY spectra of the complex, were measured and interpreted using full relaxation and conformational exchange matrix analysis. The theoretical NOEs were computed using the geometry of the tetrasaccharide found in a Monte Carlo conformational search, and the three-dimensional structures of AGA*IM in both free and bound forms were derived. All monitored NMR variables, 1H and 13C chemical shifts, 1JC-H couplings and transferred NOEs, indicated that the changes in conformation at the glycosidic linkage GlcN, 6-SO3-alpha(1-4)-GlcA were induced by the presence of antithrombin and suggested that the receptor selected a conformer different from that in the free state. Such changes are compatible with the two-step model [Desai, U.R., Petitou, M., Bjork, I. & Olson, S. (1998) J. Biol. Chem. 273, 7478-7487] for the interaction of heparin-derived oligosaccharides with antithrombin, but with a minor extension: in the first step a low-affinity recognition complex between ligand and receptor is formed, accompanied by a conformational change in the tetrasaccharide, possibly creating a complementary three-dimensional structure to fit the protein-binding site. During the second step, as observed in a structurally similar pentasaccharide [Skinner, R., Abrahams, J.-P., Whisstock, J.C., Lesk, A.M., Carrell, R.W. & Wardell, M.R. (1997) J. Mol. Biol. 266, 601-609; Jin, L., Abrahams, J.-P., Skinner, R., Petitou, M., Pike, R. N. & Carrell, R.W. (1997) Proc. Natl Acad. Sci. USA 94, 14683-14688], conformational changes in the binding site of the protein result in a latent conformation.


Subject(s)
Antithrombins/metabolism , Heparin/chemistry , Oligosaccharides/chemistry , Carbohydrate Conformation , Carbohydrate Sequence , Magnetic Resonance Spectroscopy , Molecular Sequence Data , Oligosaccharides/metabolism , Solutions , Water
18.
Stud Health Technol Inform ; 68: 650-3, 1999.
Article in English | MEDLINE | ID: mdl-10724971

ABSTRACT

An identification system for aquatic bacteria which would be useful for aspects ranging from pollution monitoring to health care, is described. It contains relevant information concerning the nature, taxonomy and activity of aquatic bacteria and allows to identify fresh isolates by means of their chemotaxonomic profiles. The system is simple and user friendly, so that it can be used by people not familiar with computers and has a modular interface that allows an easy interaction with laboratory instruments. The system is also connected with artificial neural network based programs to identify strains starting from the considered chemotaxonomic features.


Subject(s)
Bacteria/isolation & purification , Bacteriological Techniques , Neural Networks, Computer , Water Microbiology , Databases as Topic , Humans , User-Computer Interface
19.
Anal Biochem ; 223(1): 135-41, 1994 Nov 15.
Article in English | MEDLINE | ID: mdl-7695089

ABSTRACT

The sequence (IdoA2SO3-GalNAc4SO3)n contributes to the HCII-mediated inhibition of thrombin by dermatan sulfate (DS). This sequence clearly results from the 13C NMR spectrum and can be quantified by the signal C1-H of IdoA2SO3 in the 1H NMR spectrum. A linear correlation has been found between the content in the disulfated disaccharide delta Di-2,4diS obtained by enzymatic demolition with ABC lyase, the percentage content in IdoA2SO3 quantified by 1H NMR, and the HCII-mediated activity of dermatan sulfates from beef mucosa and pig skin. DSs have been obtained also from pig mucosa and contain an amount, not negligible, of delta Di-4, 6diS. This disulfate disaccharide contributes to the activity expressed by the IdoA2SO3-GalNAc4SO3 sequence. The analytical techniques HPLC and 1H NMR, applied to the currently performed analyses of DS, are described and discussed.


Subject(s)
Dermatan Sulfate/analysis , Heparin Cofactor II/metabolism , Binding Sites , Dermatan Sulfate/metabolism , Magnetic Resonance Spectroscopy
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