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1.
Chem Sci ; 15(14): 5277-5283, 2024 Apr 03.
Article in English | MEDLINE | ID: mdl-38577370

ABSTRACT

Chemodivergent construction of structurally distinct heterocycles from the same precursors by adjusting specific reaction parameters is an emergent area of organic synthesis; yet, understanding of the processes that underpin the reaction divergence is lacking, preventing the development of new synthetic methods by systematically harnessing key mechanistic effects. We describe herein cesium carbonate-promoted oxadiaza excision cross-coupling reactions of ß-ketoesters with 1,2,3-triazine 1-oxides that form pyridones in good to high yields, instead of the sole formation of pyridines when the same reaction is performed in the presence of other alkali metal carbonates or organic bases. The reaction can be further extended to the construction of synthetically challenging pyridylpyridones. A computational study comparing the effect of cesium and sodium ions in the oxadiaza excision cross-coupling reactions reveals that the cesium-coordinated species changes the reaction preference from attack at the ketone carbonyl to attack at the ester carbon due to metal ion-specific transition state conformational accommodation, revealing a previously unexplored role of cesium ions that may facilitate the development of chemodivergent approaches to other heterocyclic systems.

2.
J Am Chem Soc ; 145(24): 13059-13068, 2023 Jun 21.
Article in English | MEDLINE | ID: mdl-37294869

ABSTRACT

One of the most important reactions of 1,2,3-triazines with a dienophile is inverse electron demand Diels-Alder (IEDDA) cycloaddition, which occurs through nucleophilic addition to the triazine followed by N2 loss and cyclization to generate a heterocycle. The site of addition is either at the 4- or 6-position of the symmetrically substituted triazine core. Although specific examples of the addition of nucleophiles to triazines are known, a comprehensive understanding has not been reported, and the preferred site for nucleophilic addition is unknown and unexplored. With access to unsymmetrical 1,2,3-triazine-1-oxides and their deoxygenated 1,2,3-triazine compounds, we report C-, N-, H-, O-, and S-nucleophilic additions on 1,2,3-triazine and 1,2,3-triazine-1-oxide frameworks where the 4- and 6-positions could be differentiated. In the IEDDA cycloadditions using C- and N-nucleophiles, the site of addition is at C-6 for both heterocyclic systems, but product formation with 1,2,3-triazine-1-oxides is faster. Other N-nucleophile reactions with triazine 1-oxides show addition at either the 4- or 6-position of the triazine 1-oxide ring, but nucleophilic attack only occurs at the 6-position on the triazine. Hydride from NaBH4 undergoes addition at the 6-position on the triazine and the triazine 1-oxide core. Alkoxides show a high nucleophilic selectivity for the 4-position of the triazine 1-oxide. Thiophenoxide, cysteine, and glutathione undergo nucleophilic addition on the triazine core at the 6-position, while addition occurs at the 4-position of the triazine 1-oxide. These nucleophilic additions proceed under mild reaction conditions and show high functional group tolerance. Computational studies clarified the roles of the nucleophilic addition and nitrogen extrusion steps and the influence of steric and electronic factors in determining the outcomes of the reactions with different nucleophiles.

3.
Org Lett ; 25(7): 1104-1108, 2023 Feb 24.
Article in English | MEDLINE | ID: mdl-36787541

ABSTRACT

1,2,3-Triazine 1-oxides are remarkably effective substrates for inverse electron demand Diels-Alder reactions. Formed from vinyldiazoacetates via reaction with tert-butyl nitrite, these stable heterocyclic compounds undergo clean nucleophilic addition with amidines to form pyrimidines, with ß-ketocarbonyl compounds and related nitrile derivatives to form polysubstituted pyridines and with 3/5-aminopyrazoles to form pyrazolo[1,5-a]pyrimidines, in high yield. These practical reactions are rapid at room temperature, are base catalyzed, and offer a diversity of structural modifications.

4.
Org Lett ; 24(36): 6543-6547, 2022 09 16.
Article in English | MEDLINE | ID: mdl-36054906

ABSTRACT

A convenient, efficient, and inexpensive method has been developed for the synthesis of 1,2,3-triazine derivatives via deoxygenation of 1,2,3-triazine 1-oxide using trialkyl phosphites. Triethyl phosphite is more reactive than trimethyl phosphite, and both phosphites form their corresponding phosphates in these reactions. This procedure provides a range of aromatic and aliphatic substituted 1,2,3-triazine-4-carboxylate derivatives cleanly in high yields. Unexpected 1,2,4-triazine derivatives were also obtained as minor products during deoxygenation of 1,2,3-triazine-4-carboxylate 1-oxides having an aliphatic substituent at the 5-position.


Subject(s)
Phosphites , Oxides , Phosphates , Triazines
5.
IEEE J Biomed Health Inform ; 26(3): 983-991, 2022 03.
Article in English | MEDLINE | ID: mdl-34324425

ABSTRACT

In the healthcare research community, Internet of Medical Things (IoMT) is transforming the healthcare system into the world of the future internet. In IoMT enabled Computer aided diagnosis (CAD) system, the Health-related information is stored via the internet, and supportive data is provided to the patients. The development of various smart devices is interconnected via the internet, which helps the patient to communicate with a medical expert using IoMT based remote healthcare system for various life threatening diseases, e.g., brain tumors. Often, the tumors are predecessors to cancers, and the survival rates are very low. So, early detection and classification of tumors can save a lot of lives. IoMT enabled CAD system plays a vital role in solving these problems. Deep learning, a new domain in Machine Learning, has attracted a lot of attention in the last few years. The concept of Convolutional Neural Networks (CNNs) has been widely used in this field. In this paper, we have classified brain tumors into three classes, namely glioma, meningioma and pituitary, using transfer learning model. The features of the brain MRI images are extracted using a pre-trained CNN, i.e. GoogLeNet. The features are then classified using classifiers such as softmax, Support Vector Machine (SVM), and K-Nearest Neighbor (K-NN). The proposed model is trained and tested on CE-MRI Figshare and Harvard medical repository datasets. The experimental results are superior to the other existing models. Performance measures such as accuracy, specificity, and F1 score are examined to evaluate the performances of the proposed model.


Subject(s)
Brain Neoplasms , Machine Learning , Algorithms , Brain , Brain Neoplasms/diagnostic imaging , Humans , Neural Networks, Computer
6.
Dalton Trans ; 50(14): 4848-4858, 2021 Apr 14.
Article in English | MEDLINE | ID: mdl-33877182

ABSTRACT

Designing metal complexes as functional models for metalloenzymes remains one of the main targets in synthetic bioinorganic chemistry. Furthermore, the utilization of the product(s) derived from the catalytic reaction for subsequent organic transformation that occurs in biological systems is an even more difficult challenge for biochemists. Urease, the most efficient enzyme known, catalyzes the hydrolysis of urea and it contains an essential dinuclear NiII cluster in the active site. Inspired by the catalytic properties of urease, two dinickel(ii) complexes viz. Ni2L12(OAc)2(H2O) (1) and Ni2L22(OAc)2(H2O) (2) [HL1 = 2,4-dimethyl-6-{[(2'-dimethyl aminoethyl)methylamino]methyl}-phenol and HL2 = 2,4-dichloro-6-{[(2'-dimethyl aminoethyl)methylamino]methyl}-phenol] have been synthesized and characterized in this report. Both the complexes have shown the urease kind of activity with the liberation of ammonia from urea in aqueous solution. The plausible mechanistic pathway and kinetics of the reactions have been studied. Besides, the liberated ammonia has been utilized in the one-pot synthesis of biologically active products like 2-amino-3-cyanopyridines and their derivatives in aqueous medium with excellent yields.


Subject(s)
Coordination Complexes/chemistry , Nickel/chemistry , Pyridines/chemistry , Catalysis , Coordination Complexes/chemical synthesis , Kinetics , Molecular Conformation
7.
Org Lett ; 21(22): 9009-9013, 2019 11 15.
Article in English | MEDLINE | ID: mdl-31692359

ABSTRACT

Oxidation of ynamides by mCPBA led to ß-oxygenation and resulted in formation of carbonyl compounds with α-N,O-acetal functionality. These N,O-acetals are formed in high yields and can be stored indefinitely at room temperature. Yet, they can be activated by a chiral Brønsted acid and underwent an enantioselective transacetalization into a α-N,O-acetal. Subsequent diastereoselective transformations occurred with exceptional selectivity according to Felkin-Anh model.

8.
Biochimie ; 163: 21-32, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31075282

ABSTRACT

Huntington's diseases (HD) is a very devastating disease caused by r(CAG) expansion in HTT gene, encoding the huntingtin protein. r(CAG) expansion causes disease via multiple pathways including, 1) loss of normal protein function like sequestration of RNA binding protein such as Muscleblind-like (MBNL) and nucleolin, 2) Gain of function for mutant proteins and 3) repeat-associated non-ATG (RAN) translation; in which expanded r(CAG) translates into toxic poly glu, poly ser, or poly ala without the use of any canonical start codon. Herein, we have rationally designed and synthesized a unique class of pyridocoumarin derivatives that target the r(CAG)exp involved in HD and spinocerebellar ataxia (SCA) pathogenesis. Notably, compounds 3 and 15 showed higher affinity (nanomolar Kd) and selectivity for diseased r(CAG)exp RNA compared to regular duplex AU-paired RNA. Interestingly, both scaffolds are cell permeable, exhibit low toxicity to healthy fibroblast cells and are also capable of reducing the level of poly Q aggregation in cellular models. Indeed, our current study offers promising facet for selectively targeting repeats containing RNAs that cause severe diseases like HD and SCAs.


Subject(s)
Coumarins/chemistry , Huntington Disease/drug therapy , Mutant Proteins/genetics , RNA, Messenger/chemistry , Spinocerebellar Ataxias/drug therapy , Cells, Cultured , Coumarins/pharmacology , Coumarins/therapeutic use , Drug Design , Humans , Huntingtin Protein , Huntington Disease/metabolism , Kinetics , Molecular Docking Simulation , Nucleic Acid Conformation , RNA, Messenger/drug effects , Spinocerebellar Ataxias/metabolism , Trinucleotide Repeat Expansion
9.
J Org Chem ; 82(20): 10928-10938, 2017 10 20.
Article in English | MEDLINE | ID: mdl-28933552

ABSTRACT

An efficient, solvent-free, and eco-friendly domino reaction of 5/6-membered cyclic sulfamidate imines with a variety of ß,γ-unsaturated α-ketocarbonyls in neat conditions under MW irradiation promoted by DABCO as a solid organobase has been developed for the rapid construction of a novel class of densely functionalized picolinates. This interesting metal-solvent-free tactic allows a wide range of useful functionalities on the aryl rings and delivers good to excellent yields of the aforesaid aza-heterocycles within short time spans (20-40 min). A biologically promising imidazo[1,2-a]pyridine was successfully synthesized through our unique procedure.

10.
Org Biomol Chem ; 15(15): 3286-3297, 2017 Apr 11.
Article in English | MEDLINE | ID: mdl-28358153

ABSTRACT

A facile, green, metal-free new one-pot synthetic strategy has been developed for easy access to a wide array of medicinally promising functionalized pyridines having an ester, a nitrile or an acetyl group at the C-3 position in good to excellent yields via a domino SN2/elimination/6π-aza-electrocyclization/aromatization reaction of several 4-aryl/hetero-aryl-substituted 5-membered cyclic sulfamidate imines with a broad range of MBH acetates of acrylate/acrylonitrile/MVK in 2-MeTHF promoted by DABCO as an organobase under an O2 atmosphere. Moreover, a biologically interesting triazolopyridine derivative was achieved through a unique procedure.


Subject(s)
Acetates/chemistry , Imines/chemistry , Niacin/chemistry , Piperazines/chemistry , Green Chemistry Technology , Solvents/chemistry , Stereoisomerism
11.
J Org Chem ; 81(10): 4378-85, 2016 05 20.
Article in English | MEDLINE | ID: mdl-27129356

ABSTRACT

An interesting domino reaction of 5-membered cyclic sulfamidate imines with a variety of Morita-Baylis-Hillman acetates of nitroolefins/nitrodienes in the presence of DABCO as an organic base at 55 °C is reported for the first time. This new synthetic strategy provides a series of pharmacologically interesting 4,6-diarylpicolinates in high to excellent yields and allows several compatible functionalities on aryl rings. Moreover, the biologically interesting imidazo[1,2-a]pyridine (alpidem derivative) has been prepared in high chemical yield through a unique procedure.

12.
Org Biomol Chem ; 14(6): 1940-5, 2016 Feb 14.
Article in English | MEDLINE | ID: mdl-26782371

ABSTRACT

Excellent stereoselective (up to ≤96 : 4 Z/E ratio) construction of pharmaceutically interesting functionalized pyrano[3,2-c]chromenes, pyranonaphthoquinones and related pyrano-fused heterocycles has been achieved in good to high yields (72-89%) through a domino Michael/hydroalkoxylation reaction involving several enolizable cyclic ß-keto esters/1,3-dicarbonyls and α-arylacetylenyl-ß-nitrostyrenes as binucleophiles in EtOH at room temperature using DABCO as an organocatalyst. Moreover, syn-2-benzyl-4-aryl-3,4-dihydropyrano[3,2-c]chromenes were obtained in high yields (81-86%) via a stereoselective denitrohydrogenation of the corresponding 2-benzylidene-3,4-dihydropyrano[3,2-c]chromenes using a catalytic amount of 10% Pd/C.


Subject(s)
Alkenes/chemistry , Benzopyrans/chemical synthesis , Heterocyclic Compounds/chemical synthesis , Naphthoquinones/chemical synthesis , Nitro Compounds/chemistry , Piperazines/chemistry , Pyrans/chemical synthesis , Benzopyrans/chemistry , Catalysis , Heterocyclic Compounds/chemistry , Models, Molecular , Molecular Structure , Naphthoquinones/chemistry , Pyrans/chemistry , Stereoisomerism
13.
Org Biomol Chem ; 11(48): 8410-8, 2013 Dec 28.
Article in English | MEDLINE | ID: mdl-24189837

ABSTRACT

A simple, mild, green, catalytic and general procedure for the direct synthesis of highly functionalized 1-methoxycarbonyl-2-aryl/alkyl-3-nitro-9H-carbazoles has been achieved in water medium via a one-pot domino Michael-Henry/aromatization reaction of methyl 2-(3-formyl-1H-indol-2-yl)acetates with aryl/alky-substituted ß-nitroolefins under air using DABCO (30 mol%) as an organocatalyst. In addition, the bench scale synthesis can be performed without using toxic organic solvents and a biologically important new fused carbazole has been prepared.


Subject(s)
Carbazoles/chemical synthesis , Water/chemistry , Carbazoles/chemistry , Catalysis , Green Chemistry Technology , Piperazines/chemistry
14.
Org Biomol Chem ; 11(41): 7084-7, 2013 Nov 07.
Article in English | MEDLINE | ID: mdl-24057205

ABSTRACT

A simple, mild and robust method for the stereoselective synthesis of (E)-methyl α-(3-formyl-1H-indol-2-yl)-ß-aryl/alkyl-substituted acrylates via a condensation reaction of methyl 2-(3-formyl-1H-indol-2-yl)acetate with several alkyl or aryl aldehydes using L-proline (25 mol%) as a catalyst is presented for the first time. In addition, completely metal free based high yielding methods for the syntheses of highly substituted biologically important carbazoles, γ-carbolines and the marine alkaloid prenostodione have been developed through our methodology.


Subject(s)
Acrylates/chemical synthesis , Carbazoles/chemical synthesis , Carbolines/chemical synthesis , Indoles/chemical synthesis , Proline/chemistry , Acrylates/chemistry , Carbazoles/chemistry , Carbolines/chemistry , Catalysis , Indoles/chemistry , Molecular Structure , Stereoisomerism
15.
Carbohydr Polym ; 90(1): 496-506, 2012 Sep 01.
Article in English | MEDLINE | ID: mdl-24751070

ABSTRACT

The synthesis of acrylamide-grafted-gellan gum was carried out by microwave-assisted free radical polymerization using cerric ammonium nitrate (CAN) as redox initiator. A series of graft copolymers, varying in amount of acrylamide, CAN and microwave irradiation time was prepared. The modified gum was extracted with 20% (v/v) methanol to remove the homopolymer formed during polymerization reaction. These graft copolymers were characterized by FTIR, (13)C NMR, CHN, SEM, rheological studies and DSC studies. Comparison of grafting parameters such as grafting efficiency, percentage grafting and percentage conversion were carried out among various series of graft copolymers and then correlating it with elemental analysis, DSC, viscosity results. The acute oral toxicity study of grated gum was evaluated as per OECD guideline. Tablets were prepared by incorporating antidiabetic drug metformin hydrochloride (MTF) in grafted gum along with excipients. In vitro studies were performed on prepared tablet formulations showing release up to 8 h.


Subject(s)
Acrylamide/chemical synthesis , Chemistry, Pharmaceutical/methods , Drug Delivery Systems/methods , Microwaves , Polysaccharides, Bacterial/chemical synthesis , Acrylamide/administration & dosage , Animals , Female , Magnetic Resonance Spectroscopy/methods , Mice , Polysaccharides, Bacterial/administration & dosage , Spectroscopy, Fourier Transform Infrared/methods , X-Ray Diffraction
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