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1.
Clin Microbiol Infect ; 24(2): 201.e5-201.e8, 2018 Feb.
Article in English | MEDLINE | ID: mdl-28782648

ABSTRACT

OBJECTIVES: Outbreaks of Campylobacter are traditionally considered to be rare; however, rather than being the true nature of the disease, this may reflect our present inability to detect them. The aim of this study was to determine the genetic and epidemiological degree of clustering among Campylobacter jejuni isolates from Danish patients. METHODS: Whole-genome sequencing (WGS) was applied to 245 C. jejuni isolates from patients with domestically acquired infection over a 9-month period in 2015 and 2016. RESULTS: WGS demonstrated that 62 of the 245 isolates (25%) clustered genetically. In total, 21 genetic clusters were identified of which four (18%) consisted of five isolates or more. Seventeen (81%) of the 21 genetic clusters were clustered in space and/or time. Of the 245 isolates, 49 (20%) were part of a temporal and/or geographical cluster. The identified clusters included two outbreaks; one which had not been identified through the existing surveillance system. CONCLUSIONS: Using WGS, we show that Campylobacter case clustering and even outbreaks appear to occur more often than previously assumed, providing important new insight into the relatively poorly understood epidemiology of the most important cause of bacterial gastroenteritis in the industrialized world.


Subject(s)
Campylobacter jejuni/genetics , Genome, Bacterial/genetics , Multigene Family/genetics , Whole Genome Sequencing , Campylobacter Infections/epidemiology , Campylobacter Infections/microbiology , Denmark/epidemiology , Disease Outbreaks , Feces/microbiology , Humans , Phylogeny , Polymorphism, Single Nucleotide/genetics
2.
Eur J Clin Microbiol Infect Dis ; 36(10): 1923-1932, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28573470

ABSTRACT

We report the results of three consecutive External Quality Assessments (EQAs) for molecular subtyping of Salmonella to assess the performance of the European national public health reference laboratories (NPHRLs). The EQA included the molecular typing methods used for European enhanced surveillance of human Salmonella infections: pulsed field gel electrophoresis (PFGE), including gel analysis by the use of the software BioNumerics, and 5-locus multiple locus variable number of tandem repeat analysis (MLVA) for serovar Typhimurium. The participation in the PFGE laboratory part was higher (27/35) than in the gel analysis (19/35) and MLVA (15/35), suggestive of the need for capacity building in methods requiring specialized equipment (MLVA) or software (gel analysis). The majority (25/27) of the participating NPHRLs produced inter-laboratory comparable PFGE gel(s). Two laboratories continued to produce low-quality gels and should have additional technical assistance in the future. In particular, two gel quality evaluation parameters, measuring "image acquisition and running conditions" and "bands", were identified to cause gel quality problems throughout the EQAs. Despite the high number of laboratories participating in the PFGE laboratory part, the participation in gel analysis was low, although increasing. In the MLVA part, the NPHRLs correctly assigned 96% (405/420) allelic profiles according to the nomenclature. In conclusion, the EQAs identified critical parameters for unsuccessful performance and helped to offer assistance to those laboratories that needed it most. The assessments supported the development of quality in molecular typing and promoted the harmonization of subtyping methods used for EU/EEA-wide surveillance of human Salmonella infections.


Subject(s)
Laboratory Proficiency Testing , Molecular Typing/methods , Molecular Typing/standards , Salmonella/classification , Salmonella/genetics , Electrophoresis, Agar Gel/methods , Electrophoresis, Gel, Pulsed-Field/methods , Europe , Humans , Minisatellite Repeats
3.
Clin Microbiol Infect ; 22(7): 620-4, 2016 Jul.
Article in English | MEDLINE | ID: mdl-27145209

ABSTRACT

Listeria monocytogenes may contaminate and persist in food production facilities and cause repeated, seemingly sporadic, illnesses over extended periods of time. We report on the investigation of two such concurrent outbreaks. We compared patient isolates and available isolates from foods and food production facilities by use of whole-genome sequencing and subsequent multilocus sequence type and single nucleotide polymorphism analysis. Outbreak cases shared outbreak strains, defined as Listeria monocytogenes isolates belonging to the same sequence type with fewer than five single nucleotide polymorphism differences. We performed routine food consumption interviews of L. monocytogenes patients and compared outbreak cases with sporadic cases. Two outbreaks were defined, each consisting of ten outbreak cases in the period 2013-15. Seven outbreak cases and a fetus in gestational week 38 died. Listeria monocytogenes isolates from cold smoked or gravad fish products or their two respective production environments were repeatedly found to belong to the outbreak strains. Outbreak cases more often than sporadic cases stated that they consumed the relevant fish products, odds ratio 10.7. Routine collection and typing of food isolates was key to solving the outbreaks. Furthermore, these outbreaks illustrate the value of whole-genome sequencing for outbreak definition and investigation. Whole-genome sequencing combined with epidemiological investigations provided the discriminatory power to recognize low-intensity, extended time-period outbreaks and link them to food products from two different contaminated production facilities with sufficient strength for food authorities to intervene on. Cold smoked and gravad fish constitute risk products and may be responsible for more listeriosis cases than previously recognized.


Subject(s)
Disease Outbreaks , Fishes/microbiology , Food Microbiology , Foodborne Diseases/epidemiology , Listeria monocytogenes/isolation & purification , Listeriosis/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Animals , Child , Female , Genome, Bacterial , Genotype , Humans , Male , Middle Aged , Molecular Epidemiology , Multilocus Sequence Typing , Polymorphism, Single Nucleotide , Sequence Analysis, DNA , Young Adult
4.
Biomol Detect Quantif ; 6: 4-12, 2016 Jan.
Article in English | MEDLINE | ID: mdl-27077042

ABSTRACT

Integrity of the mRNA in clinical samples has major impact on the quality of measured expression levels. This is independent of the measurement technique being next generation sequencing (NGS), Quantitative real-time PCR (qPCR) or microarray profiling. If mRNA is highly degraded or damaged, measured data will be very unreliable and the whole study is likely a waste of time and money. It is therefore common strategy to test the quality of RNA in samples before conducting large and costly studies. Most methods today to assess the quality of RNA are ignorant to the nature of the RNA and, therefore, reflect the integrity of ribosomal RNA, which is the dominant species, rather than of mRNAs, microRNAs and long non-coding RNAs, which usually are the species of interest. Here, we present a novel molecular approach to assess the quality of the targeted RNA species by measuring the differential amplification (ΔAmp) of an Endogenous RNase Resistant (ERR) marker relative to a reference gene, optionally combined with the measurement of two amplicons of different lengths. The combination reveals any mRNA degradation caused by ribonucleases as well as physical, chemical or UV damage. ΔAmp has superior sensitivity to common microfluidic electrophoretic methods, senses the integrity of the actual targeted RNA species, and allows for a smoother and more cost efficient workflow.

5.
Pain ; 153(12): 2325-2331, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22944610

ABSTRACT

Slow-release strong opioids (SRSO) are indicated in patients with severe chronic pain. Side effects, lack of efficacy and risk of dependency limit their use in clinical practice. The aim of this study was to explore prescription patterns of SRSO in Swedish real-world data on patients with a diagnosis related to chronic pain (DRCP). Patient-level data were extracted from the national prescriptions register and a regional register with diagnosis codes. The prescription sequences, switches, co-medications, and strengths over time were analyzed for cancer and noncancer patients. Of 840,000 patients with a DRCP, 16,257 initiated treatment with an SRSO in 2007 to 2008. They were 71 years old on average; 60% were female and 34% had cancer. The most common first prescription was oxycodone (54%) followed by fentanyl (19%), buprenorphine (14%), and morphine (13%). 63% refilled their prescription within 6 months, and 12% switched to another SRSO, most commonly fentanyl. After 3 years, 51% of cancer and 27% of noncancer patients still being in contact with health care remained on any SRSO. Of noncancer patients, 35% had a psychiatric co-medication (SSRI or benzodiazepine). In conclusion, fewer patients remain on SRSO in the long-term in clinical practice than reported in previous clinical trials. Oxycodone is the most common first SRSO prescription and one-third of patients get a prescription indicating psychiatric comorbidity. Our interpretation of these findings are that there is need for better treatment options for these patients, and that more effort is needed to improve treatment guidelines and to ascertain that these guidelines are followed.


Subject(s)
Analgesics, Opioid/administration & dosage , Chronic Pain/drug therapy , Chronic Pain/epidemiology , Delayed-Action Preparations/therapeutic use , Practice Patterns, Physicians'/statistics & numerical data , Prescriptions/statistics & numerical data , Registries , Aged , Chronic Pain/diagnosis , Female , Humans , Male , Prevalence , Sweden/epidemiology
6.
J Thromb Haemost ; 10(10): 2127-36, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22906130

ABSTRACT

BACKGROUND: Based on in vitro and animal data, PI3Kß is given an important role in platelet adhesion and aggregation but its role in insulin signaling is unclear. OBJECTIVE: To strengthen the PI3Kß target validation using the novel, short-acting inhibitor AZD6482. METHODS AND RESULTS: AZD6482 is a potent, selective and ATP competitive PI3Kß inhibitor (IC(50) 0.01 µm). A maximal anti-platelet effect was achieved at 1 µm in the in vitro and ex vivo tests both in dog and in man. In dog, in vivo AZD6482 produced a complete anti-thrombotic effect without an increased bleeding time or blood loss. AZD6482 was well tolerated in healthy volunteers during a 3-h infusion. The ex vivo anti-platelet effect and minimal bleeding time prolongation in the dog model translated well to data obtained in healthy volunteers. AZD6482 inhibited insulin-induced human adipocyte glucose uptake in vitro (IC(50) of 4.4 µm). In the euglycemic hyperinsulinemic clamp model, in rats, glucose infusion rate was not affected at 2.3 µm but reduced by about 60% at a plasma exposure of 27 µm. In man, the homeostasis model analysis (HOMA) index increased by about 10-20% at the highest plasma concentration of 5.3 µm. CONCLUSIONS: This is the first human target validation for PI3Kß inhibition as anti-platelet therapy showing a mild and generalized antiplatelet effect attenuating but not completely inhibiting multiple signaling pathways with an impressive separation towards primary hemostasis. AZD6482 at 'supratherapeutic' plasma concentrations may attenuate insulin signaling, most likely through PI3Kα inhibition.


Subject(s)
Blood Platelets/drug effects , Fibrinolytic Agents/pharmacology , Hemostatics/pharmacology , Insulin Resistance , Phosphoinositide-3 Kinase Inhibitors , Platelet Aggregation Inhibitors/pharmacology , Protein Kinase Inhibitors/pharmacology , Pyrimidinones/pharmacology , ortho-Aminobenzoates/pharmacology , Adipocytes/drug effects , Adipocytes/enzymology , Adolescent , Adult , Animals , Bleeding Time , Blood Platelets/enzymology , Cell Line, Tumor , Class Ia Phosphatidylinositol 3-Kinase/blood , Disease Models, Animal , Dogs , Dose-Response Relationship, Drug , Double-Blind Method , Fibrinolytic Agents/administration & dosage , Fibrinolytic Agents/adverse effects , Fibrinolytic Agents/pharmacokinetics , Glucose/metabolism , Hemostasis/drug effects , Hemostatics/administration & dosage , Hemostatics/adverse effects , Hemostatics/pharmacokinetics , Humans , Male , Phosphorylation , Platelet Aggregation/drug effects , Platelet Aggregation Inhibitors/administration & dosage , Platelet Aggregation Inhibitors/adverse effects , Platelet Aggregation Inhibitors/pharmacokinetics , Platelet Function Tests , Protein Kinase Inhibitors/administration & dosage , Protein Kinase Inhibitors/adverse effects , Protein Kinase Inhibitors/pharmacokinetics , Proto-Oncogene Proteins c-akt/metabolism , Pyrimidinones/administration & dosage , Pyrimidinones/adverse effects , Pyrimidinones/pharmacokinetics , Rats , Signal Transduction/drug effects , Thrombosis/blood , Thrombosis/prevention & control , Time Factors , Young Adult , ortho-Aminobenzoates/administration & dosage , ortho-Aminobenzoates/adverse effects , ortho-Aminobenzoates/pharmacokinetics
7.
Eur J Pain ; 16(2): 289-99, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22323381

ABSTRACT

BACKGROUND: Chronic pain constitutes a substantial socio-economic challenge but little is known about its actual cost. AIM: To estimate the direct and indirect costs of patients with a diagnosis related to chronic pain (DRCP), to determine variation in these costs across different diagnosis groups, and to identify what resources constitute the most important components of costs. METHODS: Patient level data from three administrative registries in Västra Götalandsregionen in Sweden including inpatient and outpatient care, prescriptions, long-term sick-leaves, and early retirement were extracted. Patients with a DRCP between January 2004 and November 2009 were selected. RESULTS: In total, 840,000 patients with a DRCP were identified. The mean total costs per patient and year were estimated at 6400 EUR but were higher for patients with cancer (10,400 EUR). Patients on analgesic drugs had more than twice as high costs as patients without analgesic drugs, on average. Indirect costs (sick-leaves and early retirement) constituted the largest cost component (59%) followed by outpatient (21%) and inpatient care (14%), whereas analgesic drug prescriptions constituted less than 1 percent of the total. CONCLUSIONS: The socio-economic burden of patients with a diagnosis related to chronic pain amounts to 32 billion EUR per year, when findings from Västra Götalandsregionen are extrapolated to the whole of Sweden. This compares to a fifth of the total Swedish tax burden in 2007 or about a tenth of Swedish GDP. This study does not provide evidence on what costs are caused by chronic pain per se. However, the higher costs of patients on analgesic drugs might indicate that the consequences of pain are of major importance.


Subject(s)
Chronic Pain/diagnosis , Chronic Pain/economics , Health Care Costs/trends , Registries , Adult , Age Distribution , Aged , Aged, 80 and over , Chronic Pain/epidemiology , Female , Humans , Male , Middle Aged , Sweden/epidemiology , Young Adult
9.
Thromb Haemost ; 87(4): 557-62, 2002 Apr.
Article in English | MEDLINE | ID: mdl-12008935

ABSTRACT

To test the hypothesis that the direct thrombin inhibitor, melagatran is able to inhibit local pro-carboxypeptidase U (proCPU) activation that occurs during thrombolytic treatment, t-PA alone, or in combination with melagatran, was given to dogs with a coronary artery thrombosis. Blood samples from the great cardiac vein and aorta were collected at baseline, during thrombus formation, throughout the t-PA+/-melagatran infusion and during the patency period, for analysis of CPU activity using a novel assay. A higher CPU activity in venous compared to arterial blood (V-A difference) indicates CPU activation in coronary vessels. Efficacy was assessed by determination of time to lysis, duration of patency and blood flow during patency. Dogs (n = 26) were randomized to receive either 1) t-PA, 1 mg/kg as an intravenous 20-min infusion; 2) t-PA as in group 1, +melagatran bolus, 0.3 mg/kg, followed by a 3-h infusion (0.15 mg/kg per h); 3) sham-operated but no coronary thrombus, and administered t-PA as for Group 1. All groups had similar baseline characteristics. Significant increases in CPU activity were observed in Groups 1 and 2 during thrombus formation, with V-A differences of 5.5 and 4.5 U/L, respectively. No significant V-A difference was observed in the sham-operated group. CPU activity increased in Group 1 during the t-PA infusion (V-A difference 15.9 U/L), whereas the V-A difference in Group 2 decreased to 2.6 U/L following melagatran treatment. These results demonstrate that melagatran attenuates generation of CPU in the coronary circulation. The mechanism is probably indirect, via inhibition of thrombin-mediated activation of proCPU.


Subject(s)
Carboxypeptidase B2/antagonists & inhibitors , Carboxypeptidase B2/physiology , Coronary Circulation/drug effects , Coronary Thrombosis/drug therapy , Enzyme Precursors/antagonists & inhibitors , Fibrinolytic Agents/pharmacology , Glycine/analogs & derivatives , Glycine/pharmacology , Thrombolytic Therapy , Tissue Plasminogen Activator/pharmacology , Animals , Aorta , Azetidines , Benzylamines , Carboxypeptidase B2/blood , Coronary Thrombosis/blood , Coronary Thrombosis/enzymology , Dogs , Enzyme Activation/drug effects , Enzyme Precursors/blood , Female , Male , Models, Animal , Random Allocation , Thrombin/antagonists & inhibitors , Veins
10.
Mol Microbiol ; 40(2): 433-9, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11309125

ABSTRACT

Fusidic acid resistance resulting from mutations in elongation factor G (EF-G) of Staphylococcus aureus is associated with fitness costs during growth in vivo and in vitro. In both environments, these costs can be partly or fully compensated by the acquisition of secondary intragenic mutations. Among clinical isolates of S. aureus, fusidic acid-resistant strains have been identified that carry multiple mutations in EF-G at positions similar to those shown experimentally to cause resistance and fitness compensation. This observation suggests that fitness-compensatory mutations may be an important aspect of the evolution of antibiotic resistance in the clinical environment, and may contribute to a stabilization of the resistant bacteria present in a bacterial population.


Subject(s)
Anti-Bacterial Agents/pharmacology , Evolution, Molecular , Fusidic Acid/pharmacology , Peptide Elongation Factor G/genetics , Staphylococcus aureus/drug effects , Staphylococcus aureus/growth & development , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Drug Resistance, Microbial/genetics , Humans , Molecular Sequence Data , Mutation , Peptide Elongation Factor G/chemistry , Peptide Elongation Factor G/metabolism , Selection, Genetic , Sequence Analysis, DNA , Staphylococcus aureus/genetics
11.
Science ; 287(5457): 1479-82, 2000 Feb 25.
Article in English | MEDLINE | ID: mdl-10688795

ABSTRACT

Most types of antibiotic resistance impose a biological cost on bacterial fitness. These costs can be compensated, usually without loss of resistance, by second-site mutations during the evolution of the resistant bacteria in an experimental host or in a laboratory medium. Different fitness-compensating mutations were selected depending on whether the bacteria evolved through serial passage in mice or in a laboratory medium. This difference in mutation spectra was caused by either a growth condition-specific formation or selection of the compensated mutants. These results suggest that bacterial evolution to reduce the costs of antibiotic resistance can take different trajectories within and outside a host.


Subject(s)
Anti-Bacterial Agents/pharmacology , Antiporters , Drug Resistance, Microbial/genetics , Mutation , Salmonella typhimurium/drug effects , Salmonella typhimurium/genetics , Adaptation, Physiological , Animals , Carrier Proteins/genetics , Culture Media , Escherichia coli Proteins , Evolution, Molecular , Female , Fusidic Acid/pharmacology , Membrane Proteins/genetics , Mice , Mice, Inbred BALB C , Peptide Elongation Factor G/genetics , Ribosomal Proteins/genetics , Salmonella typhimurium/growth & development , Salmonella typhimurium/metabolism , Selection, Genetic , Serial Passage , Streptomycin/pharmacology , Suppression, Genetic
12.
Cell Microbiol ; 2(3): 239-50, 2000 Jun.
Article in English | MEDLINE | ID: mdl-11207580

ABSTRACT

To examine the potential and strategies of the facultative intracellular pathogen Salmonella typhimurium to increase its fitness in host cells, we applied a selection that enriches for mutants with increased bacterial growth yields in murine J774-A.1 macrophage-like cells. The selection, which was based on intracellular growth competition, rapidly yielded isolates that out-competed the wild-type strain during intracellular growth. J774-A.1 cells responded to challenge with S. typhimurium by mounting an inducible nitric oxide synthase (iNOS) mRNA and protein expression and a concomitant nitric oxide (NO) production. Inhibition of NO production with the use of the competitive inhibitor N-monomethyl-L-arginine (NMMA) resulted in a 20-fold increase in bacterial growth yield, suggesting that the NO response prevented bacterial intracellular growth. In accordance with this observation, five out of the nine growth advantage mutants isolated inhibited production of NO from J774-A.1 cells, despite an induction of iNOS mRNA and iNOS protein. Accompanying bacterial phenotypes included alterations in lipopolysaccharide structure and in the profiles of proteins secreted by invasion-competent bacteria. The results indicate that S. typhimurium has the ability to mutate in several different ways to increase its host fitness and that inhibition of iNOS activity may be a major adaptation.


Subject(s)
Down-Regulation , Macrophages/microbiology , Mutation , Nitric Oxide/biosynthesis , Salmonella Infections/microbiology , Salmonella typhimurium/pathogenicity , Animals , Cell Line , Humans , Macrophages/immunology , Macrophages/metabolism , Mice , Mice, Inbred BALB C , Nitric Oxide Synthase/metabolism , Nitric Oxide Synthase Type II , Salmonella Infections/mortality , Salmonella typhimurium/classification , Salmonella typhimurium/genetics , Salmonella typhimurium/growth & development , Virulence
13.
J Bioenerg Biomembr ; 31(3): 169-75, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10591523

ABSTRACT

Structures of mitochondrial bc1 complex have been reported based on four different crystal forms by three different groups. In these structures, the extrinsic domain of the Rieske [2Fe-2S] protein, surprisingly, appeared at three different positions: the "c1" position, where the [2Fe-2S] cluster exists in close proximity to the heme c1; the "b" position, where the [2Fe-2S] cluster exist in close proximity to the cytochrome b; and the "intermediate" position where the [2Fe-2S] cluster exists in-between "c1" and "b" positions. The conformational changes between these three positions can be explained by a combination of two rotations; (1) a rotation of the entire extrinsic domain and (2) a relative rotation between the cluster-binding fold and the base fold within the extrinsic domain. The hydroquinone oxidation and the electron bifurcation mechanism at the Q(P) binding pocket of the bc1 complex is well explained using these conformational changes of the Rieske [2Fe-2S] protein.


Subject(s)
Electron Transport Complex III/chemistry , Iron-Sulfur Proteins/chemistry , Protein Conformation , Animals , Catalysis , Cattle , Electron Transport , Hydrogen Bonding , Hydroquinones/chemistry , Mitochondria, Heart/enzymology , Oxidation-Reduction
14.
J Biol Chem ; 274(48): 34277-82, 1999 Nov 26.
Article in English | MEDLINE | ID: mdl-10567403

ABSTRACT

The gene mutated in the human genetic disorder ataxia-telangiectasia codes for a protein, ATM, the known functions of which include response to DNA damage, cell cycle control, and meiotic recombination. Consistent with these functions, ATM is predominantly present in the nucleus of proliferating cells; however, a significant proportion of the protein has also been detected outside the nucleus in cytoplasmic vesicles. To understand the possible role of extra-nuclear ATM, we initially investigated the nature of these vesicles. In this report we demonstrate that a portion of ATM co-localizes with catalase, that ATM is present in purified mouse peroxisomes, and that there are reduced levels of ATM in the post-mitochondrial membrane fraction of cells from a patient with a peroxisome biogenesis disorder. Furthermore the use of the yeast two-hybrid system demonstrated that ATM interacts directly with a protein involved in the import of proteins into the peroxisome matrix. Because peroxisomes are major sites of oxidative metabolism, we investigated catalase activity and lipid hydroperoxide levels in normal and A-T fibroblasts. Significantly decreased catalase activity and increased lipid peroxidation was observed in several A-T cell lines. The localization of ATM to peroxisomes may contribute to the pleiotropic nature of A-T.


Subject(s)
Peroxisomes/chemistry , Protein Serine-Threonine Kinases/analysis , Amino Acid Sequence , Animals , Ataxia Telangiectasia/enzymology , Ataxia Telangiectasia/metabolism , Ataxia Telangiectasia/pathology , Ataxia Telangiectasia Mutated Proteins , Catalase/analysis , Catalase/genetics , Catalase/metabolism , Cell Cycle Proteins , Cell Line , Cell Nucleus/chemistry , DNA-Binding Proteins , Fibroblasts/chemistry , Fibroblasts/cytology , Fibroblasts/metabolism , Humans , Immunohistochemistry , Lipid Peroxides/metabolism , Male , Mice , Molecular Sequence Data , Peroxisomal Disorders/metabolism , Peroxisomal Disorders/pathology , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Recombinant Fusion Proteins/analysis , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Alignment , Tumor Suppressor Proteins , Two-Hybrid System Techniques
15.
Am J Hum Genet ; 65(3): 621-34, 1999 Sep.
Article in English | MEDLINE | ID: mdl-10441568

ABSTRACT

The peroxisome-biogenesis disorders (PBDs) are a genetically and phenotypically diverse group of diseases caused by defects in peroxisome assembly. One of the milder clinical variants within the PBDs is neonatal adrenoleukodystrophy (NALD), a disease that is usually associated with partial defects in the import of peroxisomal matrix proteins that carry the type 1 or type 2 peroxisomal targeting signals. Here, we characterize the sole representative of complementation group 13 of the PBDs, a patient with NALD (patient PBD222). Skin fibroblasts from patient PBD222 display defects in the import of multiple peroxisomal matrix proteins. However, residual matrix-protein import can be detected in cells from patient PBD222, consistent with the relatively mild phenotypes of the patient. PEX13 encodes a peroxisomal membrane protein with a cytoplasmically exposed SH3 domain, and we find that expression of human PEX13 restores peroxisomal matrix-protein import in cells from patient PBD222. Furthermore, these cells are homozygous for a missense mutation at a conserved position in the PEX13 SH3 domain. This mutation attenuated the activity of human PEX13, and an analogous mutation in yeast PEX13 also reduced its activity. The mutation was absent in >100 control alleles, indicating that it is not a common polymorphism. Previous studies have demonstrated extragenic suppression in the PBDs, but the phenotypes of patient PBD222 cells could not be rescued by expression of any other human PEX genes. Taken together, these results provide strong evidence that mutations in PEX13 are responsible for disease in patient PBD222 and, by extension, in complementation group 13 of the PBDs.


Subject(s)
Membrane Proteins/genetics , Mutation , Peroxisomal Disorders/genetics , Peroxisomal Disorders/metabolism , Amino Acid Substitution , Biological Transport , Biomarkers/analysis , Cell Line , Fibroblasts/metabolism , Fibroblasts/pathology , Fungal Proteins/genetics , Fungal Proteins/metabolism , Genetic Complementation Test , Humans , Infant, Newborn , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Microbodies/enzymology , Microbodies/metabolism , Peroxisomal Disorders/enzymology , Phenotype , Pichia/genetics , Polymorphism, Genetic/genetics , Skin , Transfection , src Homology Domains
16.
Immunol Lett ; 68(2-3): 247-9, 1999 Jun 01.
Article in English | MEDLINE | ID: mdl-10424427

ABSTRACT

Inflammatory bowel disease (IBD) comprises different diseases in the gastrointestinal tract in human, of which Crohn's disease (CD) and ulcerative colitis (UC) are the most prominent. A key factor in the etiology of IBD is the chronic inflammatory process, and a large body of evidence suggests that the transcription factor nuclear factor-kappa B (NF-kappaB) is the key regulator of responses determining the clinical inflammatory condition. Recent findings using antisense oligonucleotides provide direct evidence that the p65 subunit of NF-kappaB plays a central role in chronic intestinal inflammation. It has previously been shown that the Gram negative bacteria Yersinia pseudotubercolosis targets the eukaryotic signal transduction pathway(s) that lead to NF-kappaB activation (and thus avoid an anti-bacterial inflammatory response). In this paper, growth-based selected Salmonella typhimurium clones have been used to generate a clearer picture of the molecular mechanisms involved in host-parasite interactions. From the results presented here, S. typhimurium and Y. pseudotubercolosis may use the same mechanism to block NF-kappaB activation, following host cell infection. A new adaptational feature could also be shown, where a growth-based selected bacteria avoided the normally induced translocation of NF-kappaB in host cells.


Subject(s)
I-kappa B Proteins , NF-kappa B/antagonists & inhibitors , NF-kappa B/metabolism , Salmonella typhimurium/pathogenicity , Biological Transport , Cell Nucleus/metabolism , DNA-Binding Proteins/metabolism , HeLa Cells , Humans , Inflammatory Bowel Diseases/etiology , NF-KappaB Inhibitor alpha , Signal Transduction , Transcription Factor RelA
17.
Drug Metab Dispos ; 27(5): 558-64, 1999 May.
Article in English | MEDLINE | ID: mdl-10220482

ABSTRACT

Clevidipine is a new vascular selective calcium channel antagonist of the dihydropyridine type, structurally related to felodipine. Clinical trials have shown that the drug can be used to effectively control the blood pressure in connection with cardiac surgical procedures. The compound is tailored to be a short-acting drug and, due to incorporation of an ester linkage into the drug molecule, clevidipine is rapidly metabolized by ester hydrolysis. The pharmacokinetics of clevidipine and its primary metabolite, H 152/81, were studied in rats, rabbits, and dogs. In addition, the influence of the pharmacokinetics on the effect on mean arterial blood pressure was evaluated in anesthetized dogs. Compartmental nonlinear mixed effect regression analysis was used to calculate the population mean and individual pharmacokinetics of clevidipine, whereas nonlinear regression analysis of individual data was used to determine the pharmacokinetics of the primary metabolite. A linked Emax model was fitted to the individual pharmacodynamic/pharmacokinetic data in dogs. According to the results, clevidipine is a high-clearance drug with a relatively small volume of distribution, resulting in an extremely short half-life in all species studied. The median initial half-life of the individual value (Bayesian estimates) is 12, 20, and 22 s in the rabbit, rat, and dog, respectively. The primary metabolite is a high-clearance compound in the dog, whereas it is a low-clearance compound in the rat. A significant gender difference in the clearance of the metabolite was observed in the rat. The mean maximum reduction in arterial blood pressure is 38 +/- 12% (Emax) and is achieved at 85 +/- 46 nM (EC50). The half-life for reaching equilibrium between the central and the effect compartment (T1/2ke0) is 47 +/- 49 s.


Subject(s)
Antihypertensive Agents/pharmacokinetics , Calcium Channel Blockers/pharmacokinetics , Pyridines/pharmacokinetics , Anesthesia , Animals , Antihypertensive Agents/blood , Antihypertensive Agents/pharmacology , Body Fluid Compartments , Calcium Channel Blockers/blood , Calcium Channel Blockers/pharmacology , Dogs , Female , Humans , Infusions, Intravenous , Male , Pyridines/blood , Pyridines/pharmacology , Rabbits , Rats , Rats, Sprague-Dawley , Species Specificity
18.
Acta Crystallogr D Biol Crystallogr ; 55(Pt 4): 753-62, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10089305

ABSTRACT

Alpha 2u-globulin (A2U) is the major urinary protein excreted by adult male rats. The structure of a monoclinic crystal form of A2U was reported in 1992 [Böcskei et al. (1992). Nature (London), 360, 186-188]. The structures of an orthorhombic crystal form of A2U at 2. 5 A resolution (refined to an R factor of 0.248; Rfree = 0.264) and of a complex between A2U and d-limonene 1,2-epoxide (DLO) at 2.9 A resolution (R factor = 0.248; Rfree = 0.260) are presented here. DLO is one of a diverse group of chemicals which cause a male rat-specific renal carcinogenesis called hyaline-droplet nephropathy. The rate-determining step in the development of this disorder is the binding of the toxin to A2U. Comparison of the cavities in A2U and in the corresponding mouse urinary protein (MUP) reveal that the former is tailor-made for small oval hydrophobic ligands such as DLO. The cavity in MUP is more shallow and elongated and cannot easily accommodate such ligands.


Subject(s)
Alpha-Globulins/chemistry , Hyalin/chemistry , Monoterpenes , Terpenes/chemistry , Alpha-Globulins/metabolism , Alpha-Globulins/urine , Animals , Binding Sites , Crystallography, X-Ray , Cyclohexane Monoterpenes , Ligands , Macromolecular Substances , Male , Mice , Models, Molecular , Protein Conformation , Proteins , Rats , Structure-Activity Relationship , Substrate Specificity , Terpenes/metabolism , Terpenes/toxicity
19.
Mol Microbiol ; 31(1): 53-8, 1999 Jan.
Article in English | MEDLINE | ID: mdl-9987109

ABSTRACT

Many mutations in rpsL cause resistance to, or dependence on, streptomycin and are restrictive (hyperaccurate) in translation. Dependence on streptomycin and hyperaccuracy can each be reversed phenotypically by mutations in either rpsD or rpsE. Such compensatory mutations have been shown to have a ram phenotype (ribosomal ambiguity), increasing the level of translational errors. We have shown recently that restrictive rpsL alleles are also associated with a loss of virulence in Salmonella typhimurium. To test whether ram mutants could reverse this loss of virulence, we have isolated a set of rpsD alleles in Salmonella typhimurium. We found that the rpsD alleles restore the virulence of strains carrying restrictive rpsL alleles to a level close to that of the wild type. Unexpectedly, three out of seven mutant rpsD alleles tested have phenotypes typical of restrictive alleles of rpsL, being resistant to streptomycin and restrictive (hyperaccurate) in translation. These phenotypes have not been previously associated with the ribosomal protein S4. Furthermore, all seven rpsD alleles (four ram and three restrictive) can phenotypically reverse the hyperaccuracy associated with restrictive alleles of rpsL. This is the first demonstration that such compensations do not require that the compensating rpsD allele has a ribosomal ambiguity (ram) phenotype.


Subject(s)
Bacterial Proteins/genetics , Mutation , Protein Biosynthesis , Ribosomal Proteins/genetics , Salmonella typhimurium/genetics , Streptomycin/pharmacology , Alleles , Animals , Drug Resistance, Microbial/genetics , Mice , Mice, Inbred BALB C , Ribosomes , Salmonella typhimurium/drug effects , Salmonella typhimurium/pathogenicity , Virulence
20.
Regul Pept ; 75-76: 55-70, 1998 Sep 25.
Article in English | MEDLINE | ID: mdl-9802394

ABSTRACT

Cloning with subsequent in vitro and in vivo characterization of vascular neuropeptide Y (NPY) receptor subtypes in porcine and canine peripheral tissues was performed. RT-PCR with Y1 and Y2 receptor-specific primers, indicated expression of Y1 receptors in both kidney and spleen of dog and pig, and expression of Y2 receptors in pig spleen. In pig kidney, expression of Y1 receptor mRNA was located to intrarenal arteries, as demonstrated with in situ hybridization using human probes. The cloned and sequenced canine Y1, porcine Y1 and Y2 receptors revealed high homologies to previously characterized mammalian NPY receptors. Membrane and autoradiographic receptor binding studies showed specific high-affinity binding sites for the purported Y1-selective radioligands 125I-[Leu31Pro34]peptide YY (PYY) and 3H-BIBP 3226 in dog spleen, and for the putative Y2-selective 125I-PYY(3-36) in dog and pig spleen. In the pig in vivo, [Leu31Pro34]PYY, administered i.v., evoked vasoconstriction in spleen and kidney, actions that were potently inhibited by the non-peptide Y receptor antagonist SR 120107A. In contrast, PYY(3-36) evoked vasoconstriction only in spleen and this effect was not influenced by SR 120107A. NPY evoked renal and splenic vasoconstriction in the dog in vivo, vascular responses that were inhibited by both BIBP 3226 and SR 120107A. Furthermore, the Y1 receptor agonist [Leu31Pro34]NPY also caused vasoconstriction in dog kidney and spleen, whereas the putative Y2 agonist N-acetyl[Leu28Leu31]NPY(24-36) evoked no such vascular responses. It is concluded that the pig spleen is likely to contain Y1 and Y2 receptors, both involved in splenic vasoconstriction. In contrast, the Y1 receptor seems to be the sole vascular NPY receptor subtype in pig kidney. Moreover, Y1 receptors predominate in dog spleen and kidney. Furthermore, the cloned canine Y1 receptor and the porcine Y1 and Y2 receptors show great homologies to, and possess ligand requirement profiles in accordance with, the human forms.


Subject(s)
Receptors, Neuropeptide Y/genetics , Receptors, Neuropeptide Y/metabolism , Amino Acid Sequence , Animals , Arginine/analogs & derivatives , Arginine/metabolism , Base Sequence , Cloning, Molecular , DNA Primers/genetics , DNA, Complementary/genetics , Dogs , Humans , In Situ Hybridization , Kidney/metabolism , Molecular Sequence Data , Peptide YY/pharmacology , RNA, Messenger/genetics , RNA, Messenger/metabolism , Receptors, Neuropeptide Y/classification , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Species Specificity , Spleen/metabolism , Swine , Vasoconstriction/drug effects
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