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1.
Forensic Sci Int ; 308: 110159, 2020 Mar.
Article in English | MEDLINE | ID: mdl-32006880

ABSTRACT

A new discrimination method for the bioapatite materials bone, antler and ivory was developed using X-ray diffractometry and comprises non-invasive measurements in order to take valuable objects into account. Our approach deals with the analysis of peak intensity ratios resulting from several measurements on each object. For instance, the intensity ratio of the apatite reflections 002 and 310 has been described in the literature as representing the degree of apatite crystal orientation and varies depending on the sample orientation. The decisive factor for the material identification is the value dispersion of intensity ratios resulting from the total of all measurements on one object. This pattern of data points, visualised via kernel density estimation (KDE), is characteristic for ivory, bone and antler, respectively, and enables the discrimination of these materials. The observation is justifiable since apatite crystal orientation adapts to the collagen fibre arrangement which shows major differences between different sorts of bioapatite materials. The patterns of data points were received via analysis of 88 objects made of bone (n = 30), antler (n = 27) and ivory (n = 31). In order to verify several identifications X-ray computer tomography was supplemented. The presented method usefully supplements already existing approaches concerning microscopic, elementary and biochemical analyses.


Subject(s)
Antlers/chemistry , Bone and Bones/chemistry , Tooth/chemistry , X-Ray Diffraction/methods , Animals , Apatites/analysis , Data Display , Spatial Analysis , Tomography, X-Ray Computed
2.
Infect Immun ; 74(12): 6599-614, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17000720

ABSTRACT

Helicobacter pylori colonizes the gastric epithelium of at least 50% of the world's human population, playing a causative role in the development of chronic gastritis, peptic ulcers, and gastric adenocarcinoma. Current evidence indicates that H. pylori can invade epithelial cells in the gastric mucosa. However, relatively little is known about the biology of H. pylori invasion and survival in host cells. Here, we analyze both the nature of and the mechanisms responsible for the formation of H. pylori's intracellular niche. We show that in AGS cells infected with H. pylori, bacterium-containing vacuoles originate through the fusion of late endocytic organelles. This process is mediated by the VacA-dependent retention of the small GTPase Rab7. In addition, functional interactions between Rab7 and its downstream effector, Rab-interacting lysosomal protein (RILP), are necessary for the formation of the bacterial compartment since expression of mutant forms of RILP or Rab7 that fail to bind each other impaired the formation of this unique bacterial niche. Moreover, the VacA-mediated sequestration of active Rab7 disrupts the full maturation of vacuoles as assessed by the lack of both colocalization with cathepsin D and degradation of internalized cargo in the H. pylori-containing vacuole. Based on these findings, we propose that the VacA-dependent isolation of the H. pylori-containing vacuole from bactericidal components of the lysosomal pathway promotes bacterial survival and contributes to the persistence of infection.


Subject(s)
Bacterial Proteins/physiology , Gastric Mucosa/microbiology , Helicobacter pylori/physiology , Membrane Fusion , Vacuoles/microbiology , Adaptor Proteins, Signal Transducing/metabolism , Animals , Bacterial Proteins/genetics , Cathepsin D/analysis , Cathepsin D/metabolism , Cells, Cultured , Cricetinae , Endocytosis , Endosomes/microbiology , Endosomes/physiology , Endosomes/ultrastructure , Gastric Mucosa/ultrastructure , Humans , Lysosomes/microbiology , Lysosomes/physiology , Lysosomes/ultrastructure , Mutation , Vacuoles/ultrastructure , rab GTP-Binding Proteins/metabolism , rab7 GTP-Binding Proteins
3.
Infect Immun ; 68(7): 4354-7, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10858259

ABSTRACT

The functional importance of the amino terminus of the Helicobacter pylori vacuolating cytotoxin (VacA) was investigated by analyzing the relative levels of vacuolation of HeLa cells transfected with plasmids encoding wild-type and mutant forms of the toxin. Notably, VacA's intracellular activity was found to be sensitive to small truncations and internal deletions at the toxin's amino terminus. Moreover, alanine-scanning mutagenesis revealed the first VacA point mutations (at proline 9 or glycine 14) that completely abolish the toxin's intracellular activity.


Subject(s)
Bacterial Proteins/genetics , Bacterial Toxins/genetics , Helicobacter pylori/genetics , Helicobacter pylori/pathogenicity , Mutation , Bacterial Proteins/chemistry , Bacterial Proteins/physiology , Bacterial Toxins/chemistry , Genetic Complementation Test , HeLa Cells , Helicobacter pylori/physiology , Humans , Point Mutation , Sequence Deletion , Vacuoles/microbiology , Virulence/genetics , Virulence/physiology
4.
J Biol Chem ; 274(53): 37736-42, 1999 Dec 31.
Article in English | MEDLINE | ID: mdl-10608833

ABSTRACT

Most Helicobacter pylori strains secrete a toxin (VacA) that causes structural and functional alterations in epithelial cells and is thought to play an important role in the pathogenesis of H. pylori-associated gastroduodenal diseases. The amino acid sequence, ultrastructural morphology, and cellular effects of VacA are unrelated to those of any other known bacterial protein toxin, and the VacA mechanism of action remains poorly understood. To analyze the functional role of a unique strongly hydrophobic region near the VacA amino terminus, we constructed an H. pylori strain that produced a mutant VacA protein (VacA-(Delta6-27)) in which this hydrophobic segment was deleted. VacA-(Delta6-27) was secreted by H. pylori, oligomerized properly, and formed two-dimensional lipid-bound crystals with structural features that were indistinguishable from those of wild-type VacA. However, VacA-(Delta6-27) formed ion-conductive channels in planar lipid bilayers significantly more slowly than did wild-type VacA, and the mutant channels were less anion-selective. Mixtures of wild-type VacA and VacA-(Delta6-27) formed membrane channels with properties intermediate between those formed by either isolated species. VacA-(Delta6-27) did not exhibit any detectable defects in binding or uptake by HeLa cells, but this mutant toxin failed to induce cell vacuolation. Moreover, when an equimolar mixture of purified VacA-(Delta6-27) and purified wild-type VacA were added simultaneously to HeLa cells, the mutant toxin exhibited a dominant negative effect, completely inhibiting the vacuolating activity of wild-type VacA. A dominant negative effect also was observed when HeLa cells were co-transfected with plasmids encoding wild-type and mutant toxins. We propose a model in which the dominant negative effects of VacA-(Delta6-27) result from protein-protein interactions between the mutant and wild-type VacA proteins, thereby resulting in the formation of mixed oligomers with defective functional activity.


Subject(s)
Bacterial Proteins/physiology , Bacterial Toxins/metabolism , Helicobacter pylori/metabolism , Mutation , Vacuoles/metabolism , Amino Acid Sequence , Bacterial Proteins/genetics , Bacterial Proteins/pharmacology , Bacterial Toxins/genetics , Bacterial Toxins/pharmacology , HeLa Cells , Humans , Ion Channels/physiology , Membrane Potentials , Molecular Sequence Data
5.
Biochemistry ; 38(42): 13877-86, 1999 Oct 19.
Article in English | MEDLINE | ID: mdl-10529233

ABSTRACT

Diphtheria toxin fragment A (DT-A) is an important enzyme in the class of mono(ADP-ribosyl)transferases. To identify peptides and amino acid residues which form the NAD(+) binding site of DT-A using a photoaffinity approach, the photoprobes nicotinamide 8-azidoadenine dinucleotide (8-N(3)-NAD) and nicotinamide 2-azidoadenine dinucleotide (2-N(3)-NAD) were synthesized. Binding studies gave an IC(50) of 2.5 microM for 8-N(3)-NAD and 5.0 microM for 2-N(3)-NAD. Irradiation of DT-A and low concentrations of [alpha-(32)P]-8-N(3)-NAD with short-wavelength UV light resulted in rapid covalent incorporation of the photoprobe into the protein. The photoincorporation was shown to be specific for the active site with a stoichiometry of photoincorporation of 75-80%. After proteolytic digestion of photolabeled DT-A, derivatized peptides were isolated using immobilized boronate affinity chromatography followed by reversed phase HPLC. Radiolabeled peptides originating from two regions of the protein were identified. Chymotryptic digestion produced labeled peptides corresponding to His(21)-Gln(32) and Lys(33)-Phe(53). Lys-C digestion gave overlapping peptides Ser(11)-Lys(33) and Ser(40)-Lys(59). Tyr(27) was identified as the site of photoinsertion within the peptide His(21)-Gln(32) on the basis of the absence of PTH-Tyr at the predicted cycle during sequence analysis and by the lack of predicted chymotryptic cleavage at Tyr(27). Within the second modified peptide Ser(40)-Lys(59), Trp(50) is the most probable site of modification. Identification of Tyr(27) as a site of photoinsertion is in agreement with its placement in the NAD binding site of the X-ray structure of the proenzyme DT-NAD complex [Bell, C. E., and Eisenberg, D. (1996) Biochemistry 35, 1137]. Trp(50) is far from the adenine ring in the crystallographic model; however, site-directed mutagenesis studies suggest that Trp(50) is a major determinant of NAD binding affinity [Wilson, B. A., Blanke, S. R., Reich, K. A., and Collier, R. J. (1994) J. Biol. Chem. 269, 23296-23301].


Subject(s)
Azides/metabolism , Diphtheria Toxin/metabolism , NAD/analogs & derivatives , Peptide Fragments/metabolism , Photoaffinity Labels/metabolism , Amino Acid Sequence , Binding Sites , Catalysis , Chromatography, Affinity , Chromatography, High Pressure Liquid , Chymotrypsin/metabolism , Diphtheria Toxin/antagonists & inhibitors , Diphtheria Toxin/isolation & purification , Hydrolysis , Metalloendopeptidases/metabolism , Models, Molecular , Molecular Sequence Data , NAD/metabolism , Peptide Fragments/antagonists & inhibitors , Peptide Fragments/isolation & purification , Serine Endopeptidases/metabolism , Substrate Specificity
6.
J Biol Chem ; 274(14): 9277-82, 1999 Apr 02.
Article in English | MEDLINE | ID: mdl-10092603

ABSTRACT

Helicobacter pylori secretes a cytotoxin (VacA) that induces the formation of large vacuoles originating from late endocytic vesicles in sensitive mammalian cells. Although evidence is accumulating that VacA is an A-B toxin, distinct A and B fragments have not been identified. To localize the putative catalytic A-fragment, we transfected HeLa cells with plasmids encoding truncated forms of VacA fused to green fluorescence protein. By analyzing truncated VacA fragments for intracellular vacuolating activity, we reduced the minimal functional domain to the amino-terminal 422 residues of VacA, which is less than one-half of the full-length protein (953 amino acids). VacA is frequently isolated as a proteolytically nicked protein of two fragments that remain noncovalently associated and retain vacuolating activity. Neither the amino-terminal 311 residue fragment (p33) nor the carboxyl-terminal 642 residue fragment (p70) of proteolytically nicked VacA are able to induce cellular vacuolation by themselves. However, co-transfection of HeLa cells with separate plasmids expressing both p33 and p70 resulted in vacuolated cells. Further analysis revealed that a minimal fragment comprising just residues 312-478 functionally complemented p33. Collectively, our results suggest a novel molecular architecture for VacA, with cytosolic localization of both fragments of nicked toxin required to mediate intracellular vacuolating activity.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Toxins/chemistry , Cytotoxins/chemistry , Macrolides , Vacuoles/chemistry , Anti-Bacterial Agents/pharmacology , Antifungal Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Toxins/genetics , Catalytic Domain , Cytotoxins/genetics , HeLa Cells , Helicobacter pylori , Humans , Monensin/pharmacology , Peptide Fragments/chemistry , Peptide Fragments/genetics , Promoter Regions, Genetic , Structure-Activity Relationship , Vacuoles/genetics
7.
J Biol Chem ; 272(16): 10382-8, 1997 Apr 18.
Article in English | MEDLINE | ID: mdl-9099677

ABSTRACT

The vascular endothelial growth factor (VEGF) receptor FLT-1 has been shown to be involved in vasculogenesis and angiogenesis. The receptor is characterized by seven Ig-like loops within the extracellular domain. Upon VEGF binding FLT-1 becomes phosphorylated, which has been thought to be preceded by receptor dimerization. To further investigate high affinity binding of VEGF to FLT-1 and ligand-induced receptor dimerization, we expressed in Sf9 cells the entire extracellular domain comprising all seven Ig-like loops: sFLT-1(7) and several truncated mutants consisting of loop one, one and two, one to three, one to four, and one to five. The corresponding proteins, named sFLT-1(1), (2), (3), (4), and (5) were purified. Only mutants sFLT-1(3) to (7) were able to bind 125I-VEGF with high affinity. No binding of VEGF was observed with sFLT-1(1) and sFLT-1(2), indicating that the first three Ig-like loops are involved in high affinity binding of VEGF. The binding of VEGF to sFLT-1(3) could be competed with placenta growth factor (PlGF), a VEGF-related ligand, suggesting that high affinity binding of VEGF and PlGF is mediated by the same or closely related contact sites on sFLT-1. Deglycosylation of the sFLT-1(3), (4), (5), and (7) did not abolish VEGF binding. Furthermore, unglycosylated sFLT-1(3), expressed in Escherichia coli, was able to bind VEGF with similar affinity as sFLT-1(3) or sFLT-1(7), both expressed in Sf9 cells. This indicates that receptor glycosylation is not essential for high affinity binding. Dimerization of the extracellular domains of FLT-1 upon addition of VEGF was detected with all mutants containing the Ig-like loop four. Although sFLT-1(3) was able to bind VEGF, dimerization of this mutant was inefficient, indicating that sites on Ig-like loop four are essential to stabilize receptor dimers.


Subject(s)
Endothelial Growth Factors/metabolism , Endothelial Growth Factors/pharmacology , Endothelium, Vascular/metabolism , Lymphokines/metabolism , Lymphokines/pharmacology , Proto-Oncogene Proteins/metabolism , Receptor Protein-Tyrosine Kinases/metabolism , Animals , Binding Sites , Cell Line , Cloning, Molecular , DNA/biosynthesis , DNA Replication/drug effects , Dimerization , Endothelium, Vascular/cytology , Endothelium, Vascular/drug effects , Escherichia coli , Humans , Kinetics , Ligands , Proto-Oncogene Proteins/chemistry , Proto-Oncogene Proteins/isolation & purification , Receptor Protein-Tyrosine Kinases/chemistry , Receptor Protein-Tyrosine Kinases/isolation & purification , Receptors, Growth Factor/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Spodoptera , Transfection , Umbilical Veins , Vascular Endothelial Growth Factor A , Vascular Endothelial Growth Factor Receptor-1 , Vascular Endothelial Growth Factors
8.
Adv Exp Med Biol ; 419: 45-52, 1997.
Article in English | MEDLINE | ID: mdl-9193635

ABSTRACT

Saccharomyces cerevisiae was transformed with expression plasmids carrying the DTA gene under control of the GAL1 promoter; colonies that formed under inducing conditions were selected; and plasmids from these colonies were screened for mutations in DTA that failed to block expression of the protein. Substitutions at three sites were identified, all of which are in the active-site cleft; and each of the substitutions reduced ADP-ribosyltransferase activity by > 10(5). The substitutions include a charge reversal mutation of a catalytically important residue (Glu148Lys) and replacements of either of two glycines (Gly22 and Gly52) with bulky residues. The fact that multiple mutations were identified in these same residues implies that there are relatively few sites at which substitutions ablate ADP-ribosyltransferase activity without blocking expression of the full-length protein. Incorporation of a primary attenuating mutation into the DTA gene allowed S. cerevisiae also to be used to select complementary secondary mutations which altered activity less drastically. Besides elucidating structure-activity relationships, mutations identified by these approaches may be useful in designing new vaccines.


Subject(s)
Diphtheria Toxin/genetics , Glutamic Acid , Mutation , Saccharomyces cerevisiae/genetics , Binding Sites , Diphtheria Toxin/chemistry , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/pharmacology , Genetic Vectors , Molecular Structure , Poly(ADP-ribose) Polymerase Inhibitors , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Saccharomyces cerevisiae/isolation & purification
9.
Biochemistry ; 35(46): 14530-6, 1996 Nov 19.
Article in English | MEDLINE | ID: mdl-8931549

ABSTRACT

Cytochrome P450cam was subjected to high pressures of 2.2 kbar, converting the enzyme to its inactive form P420cam. The resultant protein was characterized by electron paramagnetic resonance, magnetic circular dichroism, circular dichroism, and electronic absorption spectroscopy. A range of exogenous ligands has been employed to probe the coordination structure of P420cam. The results suggest that conversion to P420cam involves a conformational change which restricts the substrate binding site and/or alters the ligand access channel. The reduction potential of P420cam is essentially the same in the presence or absence of camphor (-211 +/- 10 and -210 +/- 15 mV, respectively). Thus, the well-documented thermodynamic regulation of enzymatic activity for P450cam in which the reduction potential is coupled to camphor binding is not found with P420cam. Further, cyanide binds more tightly to P420cam (Kd = 1.1 +/- 0.1 mM) than to P450cam (Kd = 4.6 +/- 0.2 mM), reflecting a weakened iron-sulfur ligation. Spectral evidence reported herein for P420cam as well as results from a parallel investigation of the spectroscopically related inactive form of chloroperoxidase lead to the conclusion that a sulfur-derived proximal ligand is coordinated to the heme of ferric cytochrome P420cam.


Subject(s)
Camphor 5-Monooxygenase/chemistry , Heme , Iron , Circular Dichroism , Dithionite , Electron Spin Resonance Spectroscopy , Pressure , Protein Conformation , Spectrophotometry, Atomic
10.
Biochemistry ; 35(46): 14537-43, 1996 Nov 19.
Article in English | MEDLINE | ID: mdl-8931550

ABSTRACT

The mechanism by which the heme-containing peroxidase, chloroperoxidase, is able to chlorinate substrates is poorly understood. One approach to advance our understanding of the mechanism of the enzyme is to determine those factors which contribute to its stability. In particular, under alkaline conditions, chloroperoxidase undergoes a transition to a new, spectrally distinct form, with accompanying loss of enzymatic activity. In the present investigation, ferric and ferrous alkaline chloroperoxidase (C420) have been characterized by electronic absorption, magnetic circular dichroism, and electron paramagnetic resonance spectroscopy. The heme iron oxidation state influences the transition to C420; the pKa for the alkaline transition is 7.5 for the ferric protein and 9.5 for the ferrous protein. The five-coordinate, high-spin ferric native protein converts to a six-coordinate low-spin species (C420) as the pH is raised above 7.5. The inability of ferric C420 to bind exogenous ligands, as well as the dramatically increased reactivity of the proximal Cys29 heme ligand toward modification by the sulfhydryl reagent p-mercuribenzoate, suggests that a conformational change has occurred during conversion to C420 that restricts access to the peroxide binding site while increasing the accessibility of Cys29. However, it does appear that Cys29-derived ligation is at least partially retained by ferric C420, potentially in a thiolate/imidazole coordination sphere. Ferrous C420, on the other hand, appears not to possess a thiolate ligand but instead likely has a bis-imidazole (histidine) coordination structure. The axial ligand trans to carbon monoxide in ferrous-CO C420 may be a histidine imidazole. Since chloroperoxidase functions normally through the ferric and higher oxidation states, the fact that the proximal thiolate ligand is largely retained in ferric C420 clearly indicates that additional factors such as the absence of a vacant sixth coordination site sufficiently accessible for peroxide binding may be the cause of catalytic inactivity.


Subject(s)
Chloride Peroxidase/chemistry , Heme , Iron , Circular Dichroism , Electron Spin Resonance Spectroscopy , Ferric Compounds , Hydrogen-Ion Concentration , Magnetics , Protein Conformation , Spectrophotometry, Atomic
11.
Proc Natl Acad Sci U S A ; 93(16): 8437-42, 1996 Aug 06.
Article in English | MEDLINE | ID: mdl-8710889

ABSTRACT

The lethal factor (LF) and edema factor (EF) of anthrax toxin bind by means of their amino-terminal domains to protective antigen (PA) on the surface of toxin-sensitive cells and are translocated to the cytosol, where they act on intracellular targets. Genetically fusing the amino-terminal domain of LF (LFN; residues 1-255) to certain heterologous proteins has been shown to potentiate these proteins for PA-dependent delivery to the cytosol. We report here that short tracts of lysine, arginine, or histidine residues can also potentiate a protein for such PA-dependent delivery. Fusion of these polycationic tracts to the amino terminus of the enzymic A chain of diphtheria toxin (DTA; residues 1-193) enabled it to be translocated to the cytosol by PA and inhibit protein synthesis. The efficiency of translocation was dependent on tract length: (LFN > Lys8 > Lys6 > Lys3). Lys6 was approximately 100-fold more active than Arg6 or His6, whereas Glu6 and (SerSerGly)2 were inactive. Arg6DTA was partially degraded in cell culture, which may explain its low activity relative to that of Lys6DTA. The polycationic tracts may bind to anionic sites at the cell surface (possibly on PA), allowing the fusion proteins to be coendocytosed with PA and delivered to the endosome, where translocation to the cytosol occurs. Excess free LFN blocked the action of LFNDTA, but not of Lys6DTA. This implies that binding to the LF/EF site is not an obligatory step in translocation and suggests that the polycationic tag binds to a different site. Besides elucidating the process of translocation in anthrax toxin, these findings may aid in developing systems to deliver heterologous proteins and peptides to the cytoplasm of mammalian cells.


Subject(s)
Antigens, Bacterial , Bacterial Toxins/administration & dosage , Diphtheria Toxin/administration & dosage , Peptide Fragments/administration & dosage , Peptides/chemistry , Adenosine Diphosphate Ribose/metabolism , Amino Acid Sequence , Animals , Bacterial Toxins/chemistry , Biological Transport , CHO Cells , Cricetinae , Cytosol , Molecular Sequence Data , Peptide Elongation Factor 2 , Peptide Elongation Factors/metabolism , Polylysine/chemistry , Recombinant Fusion Proteins , Structure-Activity Relationship
12.
Protein Sci ; 5(4): 687-92, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8845758

ABSTRACT

Acidic conditions within the endosomal lumen induce the T domain of receptor-bound diphtheria toxin (DT) to insert into the endosomal membrane and mediate translocation of the toxin's catalytic domain to the cytosol. A conformational rearrangement in the toxin occurring near pH5 allows a buried apolar helical hairpin of the native T domain (helices TH8 and TH9) to undergo membrane insertion. If the inserted hairpin spans the bilayer, as hypothesized, then the two acidic residues within the TL5 interhelical loop, Glu 349 and Asp 352, should become exposed at the neutral cytosolic face of the membrane and reionize. To investigate the roles of these residues in toxin action, we characterized mutant toxins in which one or both acidic residues had been replaced with nonionizable ones. Each of two double mutants examined showed a several-fold reduction in cytotoxicity in 24-h Vero cell assays (sixfold for E349A + D352A and fourfold for E349Q + D352N), whereas the individual E349Q and D352N mutations caused smaller reductions in toxicity. The single and double mutations also attenuated the toxin's ability to permeabilize Vero cells to Rb+ at low pH and decreased channel formation by the toxin in artificial planar bilayers. Neither of the double mutations affected the pH-dependence profile of the toxin's conformational rearrangement in solution, as measured by binding of the hydrophobic fluorophore, 2-p-toluidinyl-naphthalene 6-sulfonate. The results demonstrate that, although there is no absolute requirement for an acidic residue within the TL5 loop for toxicity, Glu 349 and Asp 352 do significantly enhance the biological activity of the protein. The data are consistent with a model in which ionization of these residues at the cytosolic face of the endosomal membrane stabilizes the TH8/TH9 hairpin in a transmembrane configuration, thereby facilitating channel formation and translocation of the toxin's catalytic chain.


Subject(s)
Aspartic Acid/metabolism , Cell Membrane/metabolism , Diphtheria Toxin/metabolism , Glutathione/metabolism , Animals , Biological Transport , Chlorocebus aethiops , Diphtheria Toxin/chemistry , Diphtheria Toxin/genetics , Hydrogen-Ion Concentration , Mutagenesis, Site-Directed , Vero Cells
13.
Mol Microbiol ; 15(4): 661-6, 1995 Feb.
Article in English | MEDLINE | ID: mdl-7783638

ABSTRACT

The edema factor (EF) and lethal factor (LF) components of anthrax toxin require anthrax protective antigen (PA) for binding and entry into mammalian cells. After internalization by receptor-mediated endocytosis, PA facilitates the translocation of EF and LF across the membrane of an acidic intracellular compartment. To characterize the translocation process, we generated chimeric proteins composed of the PA recognition domain of LF (LFN; residues 1-255) fused to either the amino-terminus or the carboxy-terminus of the catalytic chain of diphtheria toxin (DTA). The purified fusion proteins retained ADP-ribosyltransferase activity and reacted with antisera against LF and diphtheria toxin. Both fusion proteins strongly inhibited protein synthesis in CHO-K1 cells in the presence of PA, but not in its absence, and they showed similar levels of activity. This activity could be inhibited by adding LF or the LFN fragment (which blocked the interaction of the fusion proteins with PA), by adding inhibitors of endosome acidification known to block entry of EF and LF into cells, or by introducing mutations that attenuated the ADP-ribosylation activity of the DTA moiety. The results demonstrate that LFN fused to either the amino-terminus or the carboxy-terminus of a heterologous protein retains its ability to complement PA in mediating translocation of the protein to the cytoplasm. Besides its importance in understanding translocation, this finding provides the basis for constructing a translocation vector that mediates entry of a variety of heterologous proteins, which may require a free amino- or carboxy-terminus for biological activity, into the cytoplasm of mammalian cells.


Subject(s)
Anthrax/metabolism , Antigens, Bacterial , Bacterial Toxins/metabolism , Diphtheria Toxin/metabolism , Amino Acid Sequence , Animals , Binding Sites/physiology , Binding, Competitive , Blotting, Western , CHO Cells/metabolism , Cricetinae , Cytoplasm/metabolism , Molecular Sequence Data , Protein Synthesis Inhibitors/metabolism , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship
14.
Biochemistry ; 34(3): 773-81, 1995 Jan 24.
Article in English | MEDLINE | ID: mdl-7827036

ABSTRACT

The structure of the isolated catalytic domain of diphtheria toxin at pH 5.0 was determined by X-ray crystallography at 2.5 A resolution and refined to an R-factor of 19.7%. The domain is bound to its endogenous inhibitor adenylyl(3'-->5')uridine 3'-monophosphate (ApUp). The structure of this 190-residue domain, which was expressed in and isolated from Escherichia coli, is essentially identical to the structure of the catalytic domain within whole diphtheria toxin determined at pH 7.5. However, there are two adjacent surface loops (loop 66-78 and loop 169-176) that exhibit clear differences when compared to the structure of the catalytic domain in whole diphtheria toxin. Although both loops are at the surface of the protein and are relatively flexible, the chain trace is well-defined in the electron density. The main structural difference is the closer approach of loops 66-78 and 169-176. We ascribe this structural change mainly to the absence of the neighboring transmembrane domain in the isolated catalytic domain as compared to whole diphtheria toxin. We suggest that this change represents the first step of the structural transition from the catalytic domain in whole diphtheria toxin to the translocated form of the domain. The changes are described in detail, and their implications for membrane translocation are discussed.


Subject(s)
Diphtheria Toxin/chemistry , Binding Sites , Computer Graphics , Crystallography, X-Ray , Protein Structure, Tertiary , Recombinant Proteins
15.
Biochemistry ; 33(51): 15494-500, 1994 Dec 27.
Article in English | MEDLINE | ID: mdl-7803411

ABSTRACT

Previous studies have suggested that tyrosine-65 (Tyr-65) of diphtheria toxin (DT) is located at the active site. To investigate the role of Tyr-65 in NAD binding and the ADP-ribosylation of elongation factor-2 (EF-2), we changed this residue to alanine and phenylalanine by site-directed mutagenesis of a synthetic gene encoding the catalytic fragment of DT (DTA). The alanine mutant was greatly diminished in ADP-ribosylation activity (350-fold) and NAD-glycohydrolase activity (88-fold), whereas the phenylalanine mutant was reduced in these activities only slightly. Dissociation constants (Kd) for NAD binding were 15 microM for wild-type DTA, 26 microM for the phenylalanine mutant, and greater than 800 microM NAD for the alanine mutant. However, both mutant enzymes were found to bind adenosine with nearly equal affinity as wild-type DTA. These results support a model of ADP-ribosylation in which the phenolic ring of Tyr-65 interacts with the nicotinamide ring of NAD, orienting the N-glycosidic bond of NAD for attack by the incoming nucleophile in a direct displacement mechanism.


Subject(s)
Diphtheria Toxin/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Adenosine/metabolism , Binding Sites , Diphtheria Toxin/chemistry , In Vitro Techniques , Mutagenesis, Site-Directed , Mutation , NAD/metabolism , Recombinant Proteins , Spectrometry, Fluorescence , Structure-Activity Relationship , Thermodynamics
16.
J Biol Chem ; 269(37): 23296-301, 1994 Sep 16.
Article in English | MEDLINE | ID: mdl-8083236

ABSTRACT

The two active-site tryptophans of diphtheria toxin, Trp-50 and Trp-153, were individually or jointly replaced with phenylalanine or alanine by directed mutagenesis of a synthetic gene for the toxin's catalytic A fragment. Substitution of Trp-50 with alanine (W50A) decreased the ADP-ribosyltransferase activity by nearly 10(5)-fold and reduced NAD-glycohydrolase activity beyond the limits of our detection. Effects of the W153A mutation on these activities were less dramatic, < 40-fold decrease in ADP-ribosylation and < 10-fold decrease in NAD glycohydrolysis. The W50F and W153F substitutions caused only minimal reductions (< 2-fold) in enzyme activities and NAD affinity. Decreases in affinity for NAD in the initial, ground state complex, as measured by intrinsic protein fluorescence, correlated well with the reductions in enzyme activity. None of the mutations caused greater than a 10-fold decrease in NAD affinity for the ternary Michaelis complex in the ADP-ribosylation reaction; and none caused significant increase in susceptibility to proteolytic digestion by trypsin. The results indicate that Trp-50 is a major determinant of NAD affinity. Also, they identify this residue as a candidate for modification in the development of inactive forms of the toxin for use in vaccine development.


Subject(s)
Diphtheria Toxin/genetics , Mutagenesis, Site-Directed , NAD/metabolism , Tryptophan/metabolism , Binding Sites/genetics , Diphtheria Toxin/metabolism , Kinetics , NAD+ Nucleosidase/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Spectrometry, Fluorescence
17.
Biochemistry ; 33(17): 5155-61, 1994 May 03.
Article in English | MEDLINE | ID: mdl-8172890

ABSTRACT

Diphtheria toxin (DT) has been studied as a model for understanding active-site structure and function in the ADP-ribosyltransferases. Earlier evidence suggested that histidine-21 of DT is important for the ADP-ribosylation of eukaryotic elongation factor 2 (EF-2). We have generated substitutions of this residue by cassette mutagenesis of a synthetic gene encoding the catalytic A fragment (DTA) of DT, and have characterized purified mutant forms of this domain. Changing histidine-21 to alanine, aspartic acid, leucine, glutamine, or arginine diminished ADP-ribosylation activity by 70-fold or greater. In contrast, asparagine proved to be a functionally conservative substitution, which reduced ADP-ribosylation activity by < 3-fold. The asparagine mutant was approximately 50-fold-attenuated in NAD glycohydrolase activity, however. Dissociation constants (Kd) for NAD binding, determined by quenching of the intrinsic protein fluorescence, were 15 microM for wild-type DTA, 160 microM for the asparagine mutant, and greater than 500 microM NAD for the alanine, leucine, glutamine, and arginine mutants. These and previous results support a model of the ADP-ribosylation of EF-2 in which histidine-21 serves primarily a hydrogen-bonding function. We propose that the pi-imidazole nitrogen of His-21 hydrogen-bonds to the nicotinamide carboxamide, orienting the N-glycosidic bond of NAD for attack by the incoming nucleophile in a direct displacement mechanism, and then stabilizing the transition-state intermediate of this reaction.


Subject(s)
Diphtheria Toxin/metabolism , Histidine , NAD+ Nucleosidase/metabolism , NAD/metabolism , Peptide Elongation Factors/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Adenosine Diphosphate Ribose/metabolism , Amino Acid Sequence , Binding Sites , Calorimetry , Cloning, Molecular , Diphtheria Toxin/biosynthesis , Diphtheria Toxin/chemistry , Escherichia coli/metabolism , Genes, Synthetic , Hydrogen Bonding , Kinetics , Mutagenesis, Insertional , Peptide Elongation Factor 2 , Recombinant Fusion Proteins/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Restriction Mapping
18.
Regul Pept ; 46(3): 575-82, 1993 Jul 23.
Article in English | MEDLINE | ID: mdl-8210517

ABSTRACT

From porcine duodenal mucosa we have identified three major procholecystokinin (proCCK) fragments: desoctaCCK-33, desnonaCCK-33 and desnonaCCK-39. (DesoctaCCK-33 means CCK-33 devoid of the 8 C-terminal amino acids, etc.). The fragments were purified by immunoaffinity chromatography and three steps of reverse phase HPLC monitored by a radioimmunoassay specific for the N-terminal part of CCK-33. The structures could be deduced from the proCCK sequence by N-terminal sequence determination and mass spectrometry. Whereas desnona-fragments of CCK have been described before, this is the first finding of a desoctaCCK, and it indicates that CCK-8 is released from the longer forms by endogenous cleavage of the Arg-Asp-bond. A carboxypeptidase B-like exopeptidase subsequently must produce the desnona-fragments by removing the arginine residue.


Subject(s)
Cholecystokinin/analogs & derivatives , Cholecystokinin/metabolism , Intestinal Mucosa/chemistry , Protein Precursors/metabolism , Sincalide/metabolism , Amino Acid Sequence , Animals , Cholecystokinin/chemistry , Cholecystokinin/isolation & purification , Chromatography, Affinity , Chromatography, High Pressure Liquid , Duodenum/chemistry , Frozen Sections , Mass Spectrometry , Molecular Sequence Data , Protein Precursors/chemistry , Protein Precursors/isolation & purification , Radioimmunoassay , Swine
19.
Tumour Biol ; 14(3): 174-83, 1993.
Article in English | MEDLINE | ID: mdl-8210950

ABSTRACT

Insight into the biogenesis of peptide hormones has grown explosively by elucidation of gene, mRNA and prohormone structures. In addition, information about prohormone processing enzymes is rapidly accumulating. Prohormones vary in size and organization from poly- to monoprotein structures. According to their structural organization and sequence homology, hormones are grouped in families. Prohormones are processed to bioactive peptides by multiple modifications during the transport from the endoplasmic reticulum to secretory granules. The modifications comprise different proteolytic cleavages and amino acid derivatizations. By constitutive secretion, the processing is less pronounced. The same prohormone may be expressed in several cell types that process the precursor in different ways. Awareness of cell-specific processing patterns is important for understanding the tumour synthesis of peptides and for appropriate diagnosis of peptide-producing tumours. These tumours comprise not only well-known neuroendocrine neoplasias. An increasing number of common carcinomas also expresses peptide hormone genes. However, the translation and post-translational processing in tumours are generally attenuated. Consequently, the expression is often functionally and clinically silent. A new diagnostic tool, processing-independent analysis (PIA), seems promising in quantitation of hormone gene expression at peptide level irrespective of the degree of processing. Studies of progastrin expression and processing in tumours illustrate the diagnostic superiority of PIA.


Subject(s)
Hormones/biosynthesis , Hormones/genetics , Neoplasms/diagnosis , Neoplasms/genetics , Peptide Biosynthesis , Peptides/genetics , DNA, Complementary/genetics , Gene Expression/genetics , Humans , Neoplasms/metabolism , Protein Precursors/metabolism , Protein Processing, Post-Translational
20.
Acta Oncol ; 30(4): 429-33, 1991.
Article in English | MEDLINE | ID: mdl-1854500

ABSTRACT

Insight in the mechanisms of peptide hormone expression has grown explosively by elucidation of gene, mRNA and preprohormone structures for most hormone systems during the 1980s. In addition, information about the structure and substrate specificity of many prohormone processing enzymes is rapidly accumulating in these years. The preprohormones vary considerably in size and organization from poly- to monoprotein structures. According to the structural organization and sequence homology the hormones are grouped in families. The prohormones are processed to bioactive peptides by multiple enzymatic modifications during the intracellular transport from the rough endoplasmatic reticulum to the mature secretory granules. The modifications comprise different proteolytic cleavages and amino acid derivatizations. The same prohormone may be expressed in several different cell types that process the precursor in entirely different ways. Awareness of such cell-specific processing patterns is important for the understanding of ectopic synthesis in neuroendocrine tumours.


Subject(s)
Hormones/biosynthesis , Neoplasm Proteins/biosynthesis , Neoplasms/metabolism , Peptide Biosynthesis , Protein Precursors/biosynthesis , Protein Processing, Post-Translational , Gene Expression Regulation , Hormones/chemistry , Hormones/genetics , Neoplasm Proteins/chemistry , Neoplasm Proteins/genetics , Peptides/chemistry , Peptides/genetics , Protein Conformation , Protein Precursors/chemistry , Protein Precursors/genetics
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