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1.
J Clin Microbiol ; 52(3): 940-6, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24403306

ABSTRACT

The rapid accurate detection of drug resistance mutations in Mycobacterium tuberculosis is essential for optimizing the treatment of tuberculosis and limiting the emergence and spread of drug-resistant strains. The TB Resistance line probe assay from Autoimmun Diagnostika GmbH (AID) (Strassburg, Germany) was designed to detect the most prevalent mutations that confer resistance to isoniazid, rifampin, streptomycin, amikacin, capreomycin, fluoroquinolones, and ethambutol. This assay detected resistance mutations in clinical M. tuberculosis isolates from areas with low and high levels of endemicity (Switzerland, n=104; South Africa, n=52) and in selected Mycobacterium bovis BCG 1721 mutant strains (n=5) with 100% accuracy. Subsequently, the line probe assay was shown to be capable of rapid genetic assessment of drug resistance in MGIT broth cultures, the results of which were in 100% agreement with those of DNA sequencing and phenotypic drug susceptibility testing. Finally, the line probe assay was assessed for direct screening of smear-positive clinical specimens. Screening of 98 clinical specimens demonstrated that the test gave interpretable results for >95% of them. Antibiotic resistance mutations detected in the clinical samples were confirmed by DNA sequencing. We conclude that the AID TB Resistance line probe assay is an accurate tool for the rapid detection of resistance mutations in cultured isolates and in smear-positive clinical specimens.


Subject(s)
Antitubercular Agents/pharmacology , Drug Resistance, Bacterial , Molecular Diagnostic Techniques/methods , Mycobacterium tuberculosis/drug effects , Mycobacterium tuberculosis/genetics , Humans , Microbial Sensitivity Tests/methods , Mutation , Mycobacterium bovis/drug effects , Mycobacterium bovis/genetics , Sensitivity and Specificity , South Africa , Switzerland
2.
Transpl Infect Dis ; 14(5): E60-3, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22988985

ABSTRACT

Opportunistic invasive fungal infections are a major cause of mortality in immunocompromised patients. Early diagnosis of invasive aspergillosis and proper identification of the causative agent is crucial for guidance of therapy. Accurate differentiation of Aspergillus lentulus, a filamentous fungus often misidentified as atypical Aspergillus fumigatus, is of concern as multiple antifungal drugs show a reduced susceptibility. This is the first report, to our knowledge, of a proven pulmonary invasive fungal infection caused by A. lentulus after heart transplantation.


Subject(s)
Aspergillus/isolation & purification , Heart Transplantation/adverse effects , Invasive Pulmonary Aspergillosis/microbiology , Opportunistic Infections/microbiology , Aged , Antifungal Agents/therapeutic use , Aspergillus/classification , Fatal Outcome , Humans , Immunocompromised Host , Invasive Pulmonary Aspergillosis/drug therapy , Male , Opportunistic Infections/drug therapy
3.
Infection ; 40(5): 575-8, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22403045

ABSTRACT

Corynebacterium ulcerans is mainly known for its ability to cause animal infections. Some strains of C. ulcerans produce diphtheria toxin, which can cause life-threatening cardiopathies and neuropathies in humans. Human cutaneous C. ulcerans infection is a very rare disease that mimics classical cutaneous diphtheria. We present a very rare case of a C. ulcerans skin infection caused by a non-diphtheria toxin-producing strain of C. ulcerans that resolved after 3 weeks of therapy with amoxicillin-clavulanate. A pet cat was the probable source of infection. The presence of C. ulcerans in the mouth of the cat was confirmed by 16S rRNA gene analysis and the API Coryne system. In cases of human infection with potentially toxigenic corynebacteria, it is important to determine the species and examine the isolate for diphtheria toxin production. If toxigenicity is present, diphtheria antitoxin should be administered immediately. Carriers and potential infectious sources of C. ulcerans include not only domestic livestock but also pet animals. For the primary prevention of disease caused by diphtheria toxin-producing corynebacteria, vaccination with diphtheria toxoid is recommended.


Subject(s)
Cat Diseases/transmission , Corynebacterium Infections/transmission , Corynebacterium/isolation & purification , Pets/microbiology , Skin Diseases, Bacterial/transmission , Zoonoses/transmission , Adult , Animals , Anti-Bacterial Agents/therapeutic use , Cat Diseases/microbiology , Cats , Corynebacterium/genetics , Corynebacterium Infections/diagnosis , Corynebacterium Infections/drug therapy , Corynebacterium Infections/microbiology , Hand/microbiology , Hand/pathology , Humans , Male , Skin Diseases, Bacterial/diagnosis , Skin Diseases, Bacterial/drug therapy , Skin Diseases, Bacterial/microbiology , Zoonoses/microbiology
4.
Clin Microbiol Infect ; 18(12): 1194-204, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22264296

ABSTRACT

This study aimed to develop a modular, diagnostic algorithm for extended spectrum ß-lactamase (ESBL) detection in Enterobacteriaceae. Clinical Enterobacteriaceae strains (n = 2518) were screened for ESBL production using Clinical and Laboratory Standards Institute (CLSI) breakpoints for third-generation cephalosporins and by synergy image detection (clavulanic acid/extended-spectrum cephalosporins). Isolates screening positive for ESBL (n = 242, 108 by critical CLSI diameters alone, five by double disk synergy test (DDST) alone, and 129 by both critical diameters and DDST) and 138 ESBL screening negative isolates (control group) were investigated by molecular methods considered to be the reference standard (multiplex CTX-M type PCR, TEM and SHV type sequence characterization). One hundred and twenty-four out of 242 Enterobacteriaceae isolates screening positive for ESBL were confirmed to be ESBL positive by the reference standard, the majority of them in E. coli, K. pneumoniae and E. cloacae (94, 17 and nine isolates, respectively). Prevalence of ESBL production ranged from <1% for P. mirabilis to 4.7%, 5.1% and 6.6%, for K. pneumoniae, E. cloacae and E. coli, respectively. Combining CLSI ceftriaxone and cefpodoxime critical ESBL diameters was found to be the most sensitive phenotypic screening method (sensitivity 99.2%). Combining critical diameters of cefpodoxime and ceftriaxone with DDST for cefpodoxime resulted in a sensitivity of 100%. For phenotypic confirmation, combining the CLSI recommended combined disk test (CDT) for ceftazidime and cefotaxime amended with a cefepime CDT was highly sensitive (100%) and specific (97.5%). With respect to the studied population, the diagnostic ESBL algorithm developed would have resulted in sensitivity and specificity of 100%. The corresponding flow chart is simple, easy to use, inexpensive and applicable in the routine diagnostic laboratory.


Subject(s)
Enterobacteriaceae/enzymology , Microbiological Techniques/methods , beta-Lactamases/metabolism , Algorithms , Anti-Bacterial Agents/pharmacology , DNA, Bacterial/genetics , Enterobacteriaceae/genetics , Enterobacteriaceae/isolation & purification , Enterobacteriaceae Infections/microbiology , Genotype , Humans , Phenotype , Sensitivity and Specificity , Sequence Analysis, DNA , beta-Lactams/pharmacology
5.
J Clin Microbiol ; 49(8): 2924-32, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21653764

ABSTRACT

Two mechanisms account for AmpC activity in Escherichia coli, namely, mutations in the ampC promoter and attenuator regions resulting in ampC overexpression and acquisition of plasmid-carried ampC genes. In this study, we analyzed 51 clinical E. coli isolates with reduced susceptibility to amoxicillin-clavulanic acid, piperacillin-tazobactam, or extended-spectrum cephalosporins for the presence of AmpC production. Three phenotypic AmpC confirmation assays (cefoxitin-cloxacillin disk diffusion test, cefoxitin-EDTA disk diffusion test, and AmpC Etest) were compared for the detection of AmpC activity. All 51 isolates were characterized genetically by mutational analysis of the chromosomal ampC promoter/attenuator region and by PCR detection of plasmid-carried ampC genes. Altogether, 21/51 (41%) E. coli isolates were considered true AmpC producers. AmpC activity due to chromosomal ampC promoter/attenuator mutations was found in 12/21 strains, and plasmid-carried ampC genes were detected in 8/21 isolates. One strain contained both ampC promoter mutations and a plasmid-carried ampC gene. All three phenotypic tests were able to detect the majority (>90%) of AmpC-positive strains correctly. Cefoxitin resistance was found to be a discriminative parameter, detecting 20/21 AmpC-producing strains. Susceptibility to extended-spectrum cephalosporins, e.g., ceftriaxone, ceftazidime, and cefotaxime, was found in 9 of the 21 AmpC-positive strains. Considering the elevated zone diameter breakpoints of the 2010 CLSI guidelines, 2/21 AmpC-positive strains were categorized as susceptible to extended-spectrum cephalosporins.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Escherichia coli/enzymology , beta-Lactamases/genetics , beta-Lactamases/metabolism , Anti-Bacterial Agents/pharmacology , DNA Mutational Analysis , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli/isolation & purification , Escherichia coli Infections/microbiology , Humans , Microbial Sensitivity Tests/methods , Plasmids , Polymerase Chain Reaction , Promoter Regions, Genetic , beta-Lactams/pharmacology
6.
J Clin Microbiol ; 49(2): 523-7, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21147955

ABSTRACT

Proper identification of Streptococcus pneumoniae by conventional methods remains problematic. The discriminatory power of the 16S rRNA gene, which can be considered the "gold standard" for molecular identification, is too low to differentiate S. pneumoniae from closely related species such as Streptococcus pseudopneumoniae, Streptococcus mitis, and Streptococcus oralis in the routine clinical laboratory. A 313-bp part of recA was selected on the basis of variability within the S. mitis group, showing <95.8% interspecies homology. In addition, 6 signature nucleotides specific for S. pneumoniae were identified within the 313-bp recA fragment. We show that recA analysis is a useful tool for proper identification to species level within the S. mitis group, in particular, for pneumococci.


Subject(s)
Bacteriological Techniques/methods , Pneumococcal Infections/diagnosis , Polymerase Chain Reaction/methods , Rec A Recombinases/genetics , Viridans Streptococci/classification , Viridans Streptococci/genetics , DNA Primers/genetics , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Humans , Molecular Sequence Data , Polymorphism, Genetic , Sequence Analysis, DNA , Sequence Homology , Viridans Streptococci/isolation & purification
7.
Internist (Berl) ; 52(7): 884-8, 2011 Jul.
Article in German | MEDLINE | ID: mdl-21046063

ABSTRACT

Whipple's disease is a rare, chronic infection caused by Tropheryma whipplei, an ubiquitary gram positive bacterium. The disease is associated with a high mortality in absence of an antibiotic treatment. The disease can be detected in affected tissues and body fluids by light and electron microscopy, as well as by polymerase chain reaction (PCR). Musculoskeletal symptoms such as arthralgia and arthritis frequently represent the first manifestation of this multi-system disease; typical subsequent symptoms are weight loss, diarrhea, and abdominal pain. Symptoms of central nervous system involvement are present in 10-40% of cases. We report on a 67 year-old male with a history of migratory oligoarthritis over three decades in whom the causative agent was detected by PCR in synovial fluid only. This case illustrates that searches for the characteristic PAS-positive macrophages and PCR in biopsies from the duodenum may be insufficient and that diagnostic efforts should be complemented with PCR assays from affected tissues or body fluids. It is recommended that antibiotic treatment be carried out with an agent that penetrates well into the cerebrospinal fluid, e.g. ceftriaxone, followed by cotrimoxazole. Antibiotics should be maintained over several months to years. It is prudent to document the disappearance of the pathogen in the affected compartments prior to the discontinuation of the antibiotic therapy.


Subject(s)
Arthritis, Infectious/diagnosis , Tropheryma , Whipple Disease/diagnosis , Administration, Oral , Aged , Anti-Bacterial Agents/administration & dosage , Arthritis, Infectious/drug therapy , Arthroscopy , Ceftriaxone/administration & dosage , Diagnosis, Differential , Drug Combinations , Hip Joint/pathology , Humans , Infusions, Intravenous , Knee Joint/pathology , Magnetic Resonance Imaging , Male , Polymerase Chain Reaction , Sulfamethizole/administration & dosage , Synovial Fluid/microbiology , Synovitis/diagnosis , Trimethoprim/administration & dosage , Whipple Disease/drug therapy
8.
J Clin Microbiol ; 48(11): 3943-8, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20826640

ABSTRACT

We have recently developed a PCR assay for detection of Mycobacterium spp. at the genus level based on the Cobas Amplicor platform. The sensitivities for smear-positive and smear-negative specimens were found to be 100% and 47.9%, respectively. The specificity was 97.7%, the positive predictive value 84.6%, and the negative predictive value 93.1%. In a follow-up study, we have systematically evaluated the Mycobacterium genus assay in parallel with the Cobas Amplicor Mycobacterium tuberculosis assay on 2,169 clinical specimens, including respiratory and nonrespiratory specimens. Based on the genus assay, nontuberculous mycobacteria were readily detected and identified to the species level by PCR-mediated sequencing. In addition, our data point to a limited specificity of the Cobas Amplicor M. tuberculosis assay.


Subject(s)
Bacteriological Techniques/methods , Molecular Diagnostic Techniques/methods , Mycobacterium tuberculosis/classification , Mycobacterium tuberculosis/isolation & purification , Tuberculosis/diagnosis , Tuberculosis/microbiology , Humans , Mycobacterium tuberculosis/genetics , Predictive Value of Tests , Sensitivity and Specificity
9.
BMJ Case Rep ; 20102010 Dec 29.
Article in English | MEDLINE | ID: mdl-22802471

ABSTRACT

In a patient with mediastinitis after cardiac surgery Paenibacillus pasadenensis was detected in his sternal wound. Paenibacilli are gram-positive, aerobic, bacteria related to bacilli. Until recently these organisms were not known to cause human disease. A few cases of human infection caused by another member of this genus, P alvei, have been reported. The authors describe the first infection with P pasadenensis in humans. P pasadenensis was detected by broad-range bacterial 16S rRNA PCR. Treatment consisted of surgical debridement and antibiotics, vancomycin and ciprofloxacin followed by clindamycin and ciprofloxacin, resulting in complete recovery.


Subject(s)
Gram-Positive Bacterial Infections/complications , Mediastinitis/microbiology , Paenibacillus , Surgical Wound Infection/etiology , Aged , Cardiopulmonary Bypass , Humans , Male , Molecular Sequence Data , Paenibacillus/genetics , Spacecraft
10.
Annu Rev Phytopathol ; 39: 461-90, 2001.
Article in English | MEDLINE | ID: mdl-11701873

ABSTRACT

Rhizosphere colonization is one of the first steps in the pathogenesis of soilborne microorganisms. It can also be crucial for the action of microbial inoculants used as biofertilizers, biopesticides, phytostimulators, and bioremediators. Pseudomonas, one of the best root colonizers, is therefore used as a model root colonizer. This review focuses on (a) the temporal-spatial description of root-colonizing bacteria as visualized by confocal laser scanning microscopal analysis of autofluorescent microorganisms, and (b) bacterial genes and traits involved in root colonization. The results show a strong parallel between traits used for the colonization of roots and of animal tissues, indicating the general importance of such a study. Finally, we identify several noteworthy areas for future research.


Subject(s)
Lipopolysaccharides/metabolism , Plant Roots/microbiology , Pseudomonas/genetics , Soil Microbiology , Fimbriae, Bacterial/physiology , Flagella/physiology , Microscopy, Confocal , Plant Roots/metabolism , Pseudomonas/metabolism , Putrescine/metabolism , Recombination, Genetic
11.
Mol Plant Microbe Interact ; 14(10): 1197-205, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11605959

ABSTRACT

We developed a novel procedure for the selection of a microbe-plant pair for the stable and efficient degradation of naphthalene. Based on the rationale that root exudate is the best nutrient source available in soil, the grass (Lolium multiflorum) cultivar Barmultra was selected because of its abilities to produce a highly branched root system, root deeply, and carry a high population of Pseudomonas spp. bacteria on its roots. Starting with a mixture of total rhizobacteria from grass-like vegetation collected from a heavily polluted site and selecting for stable naphthalene degradation as well as for efficient root colonization, Pseudomonas putida strain PCL1444 was isolated. The strain's ability to degrade naphthalene was shown to be stable in the rhizosphere. Moreover, it had superior root-colonizing properties because, after the inoculation of grass seedlings, it appeared to colonize the root tip up to 100-fold better than the efficient root colonizer Pseudomonas fluorescens WCS365. Strain PCL1444 uses root exudate as the dominant nutrient source because the presence of grass seedlings in soil results in up to a 10-fold increase of PCL1444 cells. Moreover, the root colonized by strain PCL1444 was able to penetrate through an agar layer, resulting in the degradation of naphthalene underneath this layer. In addition, the inoculation of grass seeds or seedlings with PCL1444 protected them against naphthalene phytotoxicity. Finally, this plant-microbe combination appeared able to degrade naphthalene from soil that was heavily polluted with a complex mixture of polycyclic aromatic hydrocarbons. To our knowledge, this is the first time that a naturally occurring bacterium has been selected for the combination of the abilities to degrade a pollutant and colonize plant roots. We suggest that the principle described here, to select a bacterium which combines efficient root colonization with a beneficial activity, also can be used to improve the selection of other more efficient plant-bacterium pairs for beneficial purposes such as biocontrol, biofertilization, and phytostimulation.


Subject(s)
Lolium/microbiology , Plant Roots/microbiology , Polycyclic Aromatic Hydrocarbons/metabolism , Pseudomonas fluorescens/isolation & purification , Pseudomonas putida/isolation & purification , Biodegradation, Environmental , Lolium/drug effects , Mutation , Naphthalenes/metabolism , Naphthalenes/toxicity , Plant Roots/drug effects , Polycyclic Aromatic Hydrocarbons/toxicity , Pseudomonas fluorescens/genetics , Pseudomonas fluorescens/metabolism , Pseudomonas putida/genetics , Pseudomonas putida/metabolism , Time Factors
12.
Mol Plant Microbe Interact ; 14(9): 1096-104, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11551074

ABSTRACT

Sequence analysis of the chromosomal Tn5lacZ flanking regions of the Pseudomonas fluorescens WCS365 competitive root colonization mutant PCL1206 showed that the Tn5lacZ is inserted between genes homologous to bioA and potF. The latter gene is the first gene of the potF1F2GHI operon, which codes for a putrescine transport system in Escherichia coli. The position of the Tn5lacZ suggests an effect on the expression of the pot operon. A mutation in the potF1 gene as constructed in PCL1270, however, had no effect on competitive root colonization. The rate of uptake of [1,4-14C]putrescine by cells of mutant PCL1206 appeared to be increased, whereas cells of strain PCL1270 were strongly impaired in the uptake of putrescine. Dansylation of tomato root exudate and subsequent thin-layer chromatography showed the presence of a component with the same Rf value as dansyl-putrescine, which was identified as dansyl-putrescine by mass spectrometric analyses. Other polyamines such as spermine and spermidine were not detected in the root exudate. Growth of mutant strains, either alone or in competition with the wild type, was tested in media containing putrescine, spermine, or spermidine as the sole nitrogen source. The results show that mutant PCL1206 is strongly impaired in growth on putrescine and slightly impaired on spermine and spermidine. The presence of the polyamines had a similar effect on the growth rate of strain PCL1270 in the presence of putrescine but a less severe effect in the presence of spermine and spermidine. We conclude that an increased rate of putrescine uptake has a bacteriostatic effect on Pseudomonas spp. cells. We have shown that putrescine is an important tomato root exudate component and that root-colonizing pseudomonads must carefully regulate their rate of uptake because increased uptake causes a decreased growth rate and, therefore, a decreased competitive colonization ability.


Subject(s)
Pseudomonas fluorescens/genetics , Pseudomonas fluorescens/pathogenicity , Putrescine/metabolism , Solanum lycopersicum/metabolism , Solanum lycopersicum/microbiology , Base Sequence , Biological Transport, Active , DNA, Bacterial/genetics , Genes, Bacterial , Lac Operon , Solanum lycopersicum/genetics , Molecular Sequence Data , Mutation , Plant Roots/microbiology , Plasmids/genetics , Pseudomonas fluorescens/growth & development , Pseudomonas fluorescens/metabolism , Virulence/genetics
13.
Mol Plant Microbe Interact ; 14(8): 1006-15, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11497461

ABSTRACT

Pseudomonas chlororaphis PCL1391 controls tomato foot and root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. Its biocontrol activity is mediated by the production of phenazine-1-carboxamide (PCN). In contrast, the take-all biocontrol strains P. fluorescens 2-79 and P. aureofaciens 30-84, which produce phenazine-1-carboxylic acid (PCA), do not control this disease. To determine the role of the amide group in biocontrol, the PCN biosynthetic genes of strain PCL1391 were identified and characterized. Downstream of phzA through phzG, the novel phenazine biosynthetic gene phzH was identified and shown to be required for the presence of the 1-carboxamide group of PCN because a phzH mutant of strain PCL1391 accumulated PCA. The deduced PhzH protein shows homology with asparagine synthetases that belong to the class II glutamine amidotransferases, indicating that the conversion of PCA to PCN occurs via a transamidase reaction catalyzed by PhzH. Mutation of phzH caused loss of biocontrol activity, showing that the 1-carboxamide group of PCN is crucial for control of tomato foot and root rot. PCN production and biocontrol activity of the mutant were restored by complementing the phzH gene in trans. Moreover, transfer of phzH under control of the tac promoter to the PCA-producing biocontrol strains P. fluorescens 2-79 and P. aureofaciens 30-84 enabled these strains to produce PCN instead of PCA and suppress tomato foot and root rot. Thus, we have shown, for what we believe is the first time, that the introduction of a single gene can efficiently extend the range of the biocontrol ability of bacterial strains.


Subject(s)
Antifungal Agents/metabolism , Nitrogenous Group Transferases/genetics , Pest Control, Biological , Phenazines/metabolism , Pseudomonas/genetics , Amino Acid Sequence , Antifungal Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Fusarium/drug effects , Fusarium/pathogenicity , Solanum lycopersicum/microbiology , Molecular Sequence Data , Phenazines/pharmacology , Plant Diseases/microbiology , Plant Roots/microbiology , Sequence Homology, Amino Acid
14.
Mol Plant Microbe Interact ; 14(8): 969-79, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11497469

ABSTRACT

Pseudomonas chlororaphis PCL1391 controls tomato foot and root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. The production of phenazine-1-carboxamide (PCN) is crucial for this biocontrol activity. In vitro production of PCN is observed only at high-population densities, suggesting that production is under the regulation of quorum sensing. The main autoinducer molecule produced by PCL1391 was identified structurally as N-hexanoyl-L-homoserine lactone (C6-HSL). The two other autoinducers that were produced comigrate with N-butanoyl-L-homoserine lactone (C4-HSL) and N-octanoyl-L-homoserine lactone (C8-HSL). Two PCL1391 mutants lacking production of PCN were defective in the genes phzI and phzR, respectively, the nucleotide sequences of which were determined completely. Production of PCN by the phzI mutant could be complemented by the addition of exogenous synthetic C6-HSL, but not by C4-HSL, C8-HSL, or any other HSL tested. Expression analyses of Tn5luxAB reporter strains of phzI, phzR, and the phz biosynthetic operon clearly showed that phzI expression and PCN production is regulated by C6-HSL in a population density-dependent manner. The introduction of multiple copies of the regulatory genes phzI and phzR on various plasmids resulted in an increase of the production of HSLs, expression of the PCN biosynthetic operon, and consequently, PCN production, up to a sixfold increase in a copy-dependent manner. Surprisingly, our expression studies show that an additional, yet unidentified factor(s), which are neither PCN nor C4-HSL or C8-HSL, secreted into the growth medium of the overnight cultures, is involved in the positive regulation of phzI, and is able to induce PCN biosynthesis at low cell densities in a growing culture, resulting in an increase of PCN production.


Subject(s)
Antifungal Agents/metabolism , Homoserine/analogs & derivatives , Phenazines/metabolism , Pheromones/isolation & purification , Plant Diseases/microbiology , Pseudomonas/metabolism , Bacterial Proteins/genetics , DNA-Binding Proteins/genetics , Gene Dosage , Genes, Bacterial , Genes, Reporter , Molecular Sequence Data , Pest Control, Biological , Pseudomonas/genetics , Repressor Proteins/genetics , Trans-Activators/genetics , Transcription Factors/genetics
15.
Curr Opin Plant Biol ; 4(4): 343-50, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11418345

ABSTRACT

Plant-growth-promoting rhizobacteria (PGPRs) are used as inoculants for biofertilization, phytostimulation and biocontrol. The interactions of PGPRs with their biotic environment, for example with plants and microorganisms, are often complex. Substantial advances in elucidating the genetic basis of the beneficial effects of PGPRs on plants have been made, some from whole-genome sequencing projects. This progress will lead to a more efficient use of these strains and possibly to their improvement by genetic modification.


Subject(s)
Fertilizers , Genes, Bacterial , Pest Control, Biological , Plant Diseases/microbiology , Plants/microbiology , Pseudomonas/genetics , Soil Microbiology , Fungi/pathogenicity , Gene Expression Regulation, Bacterial , Genome, Bacterial , Plant Development , Plant Physiological Phenomena , Plant Proteins , Pseudomonas/ultrastructure
16.
Mol Plant Microbe Interact ; 13(12): 1340-5, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11106026

ABSTRACT

The phenazine-1-carboxamide-producing bacterium Pseudomonas chlororaphis PCL1391 controls tomato foot and root rot caused by Fusarium oxysporum f. sp. radicislycopersici. To test whether root colonization is required for biocontrol, mutants impaired in the known colonization traits motility, prototrophy for amino acids, or production of the site-specific recombinase, Sss/XerC were tested for their root tip colonization and biocontrol abilities. Upon tomato seedling inoculation, colonization mutants of strain PCL1391 were impaired in root tip colonization in a gnotobiotic sand system and in potting soil. In addition, all mutants were impaired in their ability to control tomato foot and root rot, despite the fact that they produce wild-type levels of phenazine-1-carboxamide, the antifungal metabolite previously shown to be required for biocontrol. These results show, for what we believe to be the first time, that root colonization plays a crucial role in biocontrol, presumably by providing a delivery system for antifungal metabolites. The ability to colonize and produce phenazine-1-carboxamide is essential for control of F. oxysporum f. sp. radicis-lycopersici. Furthermore, there is a notable overlap of traits identified as being important for colonization of the rhizosphere and animal tissues.


Subject(s)
Phenazines/metabolism , Plant Diseases , Pseudomonas/genetics , Pseudomonas/pathogenicity , Solanum lycopersicum/microbiology , Amino Acid Sequence , Animals , Conjugation, Genetic , DNA, Bacterial/genetics , Genes, Bacterial , Molecular Sequence Data , Plant Roots/microbiology , Sequence Alignment , Sequence Homology, Amino Acid , Soil Microbiology
17.
Mol Plant Microbe Interact ; 13(11): 1170-6, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11059483

ABSTRACT

To visualize simultaneously different populations of pseudomonads in the rhizosphere at the single cell level in a noninvasive way, a set of four rhizosphere-stable plasmids was constructed expressing three different derivatives of the green fluorescent protein (GFP), namely enhanced cyan (ECFP), enhanced green (EGFP), enhanced yellow (EYFP), and the recently published red fluorescent protein (RFP; DsRed). Upon tomato seedling inoculation with Pseudomonas fluorescens WCS365 populations, each expressing a different autofluorescent protein followed by plant growth for 5 days, the rhizosphere was inspected using confocal laser scanning microscopy. We were able to visualize simultaneously and clearly distinguish from each other up to three different bacterial populations. Microcolonies consisting of mixed populations were frequently observed at the base of the root system, whereas microcolonies further toward the root tip predominantly consisted of a single population, suggesting a dynamic behavior of microcolonies over time. Since the cloning vector pME6010 has a broad host range for gram-negative bacteria, the constructed plasmids can be used for many purposes. In particular, they will be of great value for the analysis of microbial communities, for example in processes such as biocontrol, biofertilization, biostimulation, competition for niches, colonization, and biofilm formation.


Subject(s)
Luminescent Proteins/isolation & purification , Plant Roots/microbiology , Pseudomonas fluorescens/isolation & purification , Soil Microbiology , Bacteriological Techniques , Escherichia coli/isolation & purification , Luminescent Proteins/genetics , Solanum lycopersicum , Microscopy, Confocal , Microscopy, Fluorescence , Plasmids , Pseudomonas fluorescens/genetics
18.
Appl Environ Microbiol ; 63(11): 4543-51, 1997 Nov.
Article in English | MEDLINE | ID: mdl-9361441

ABSTRACT

The development of sensitive methods for observing individual bacterial cells in a population in experimental models and natural environments, such as in biofilms or on plant roots, is of great importance for studying these systems. We report the construction of plasmids which constitutively express a bright mutant of the green fluorescent protein of the jellyfish Aequorea victoria and are stably maintained in Pseudomonas spp. We demonstrate the utility of these plasmids to detect individual cells in two experimental laboratory systems: (i) the examination of a mixed bacterial population of Pseudomonas aeruginosa and Burkholderia cepacia attached to an abiotic surface and (ii) the association of Pseudomonas fluorescens WCS365 with tomato seedling roots. We also show that two plasmids, pSMC2 and pGB5, are particularly useful, because they are stable in the absence of antibiotic selection, they place an undetectable metabolic burden on cells that carry the plasmids, and cells carrying these constructs continue to fluoresce even after 7 days in culture without the addition of fresh nutrients. The construction of improved Escherichia coli-Pseudomonas shuttle vectors which carry multiple drug resistance markers also is described.


Subject(s)
Luminescent Proteins/genetics , Pseudomonas/isolation & purification , Biomarkers , Drug Resistance, Microbial/genetics , Green Fluorescent Proteins , Plasmids
19.
Proc Natl Acad Sci U S A ; 94(9): 4336-41, 1997 Apr 29.
Article in English | MEDLINE | ID: mdl-9113990

ABSTRACT

The nodZ gene, which is present in various soil bacteria such as Bradyrhizobium japonicum, Azorhizobium caulinodans, and Rhizobium loti, is involved in the addition of a fucosyl residue to the reducing N-acetylglucosamine residue of lipochitin oligosaccharide (LCO) signal molecules. Using an Escherichia coli strain that produces large quantities of the NodZ protein of B. japonicum, we have purified the NodZ protein to homogeneity. The purified NodZ protein appears to be active in an in vitro transfucosylation assay in which GDP-beta-fucose and LCOs or chitin oligosaccharides are used as substrates. The products of the in vitro reaction using chitin oligosaccharides as substrate were studied by using mass spectrometry, linkage analysis, and composition analysis. The data show that one fucose residue is added to C6 of the reducing-terminal N-acetylglucosamine residue. The substrate specificity of NodZ protein was analyzed in further detail, using radiolabeled GDP-beta-fucose as the donor. The results show that chitin oligosaccharides are much better substrates than LCOs, suggesting that in Rhizobium NodZ fucosylates chitin oligosaccharides prior to their acylation. The free glycan core pentasaccharides of N-linked glycoproteins are also substrates for NodZ. Therefore, the NodZ enzyme seems to have an activity equivalent to that of the enzyme involved in the addition of the C6-linked fucosyl substituent in the glycan core of N-linked glycoproteins in eukaryotes. Oligosaccharides that contain only one N-acetylglucosamine at the reducing terminus are also substrates for NodZ, although in this case very high concentrations of such oligosaccharides are needed. An example is the leukocyte antigen Lewis-X, which can be converted by NodZ to a novel fucosylated derivative that could be used for binding studies with E-selectin.


Subject(s)
Bacterial Proteins/metabolism , Chitin/metabolism , Fucosyltransferases/metabolism , Oligosaccharides/metabolism , Acetylglucosamine/metabolism , Bacterial Proteins/genetics , Carbohydrate Sequence , Fucosyltransferases/genetics , Guanosine Diphosphate Fucose/metabolism , Molecular Sequence Data , Recombinant Proteins/metabolism , Substrate Specificity
20.
Development ; 124(23): 4887-95, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9428425

ABSTRACT

Rhizobia, bacterial symbionts of leguminous plants, produce lipo-chitin oligosaccharide (LCO) signal molecules that can induce nodule organogenesis in the cortex of legume roots in a host-specific way. The multi-unsaturated fatty acyl and the O-acetyl moieties of the LCOs of Rhizobium leguminosarum biovar viciae were shown to be essential for obtaining root nodule induction in Vicia sativa plants. We have used ballistic microtargeting as a novel approach to deliver derivatives of the nodulation signal molecules inside the roots of V. sativa. This method offers the unique ability to introduce soluble compounds into the tissue at a small area. The mitogenic effect of microtargeting of chitin oligosaccharides, including an analysis of the influence of the chain length and modifications, was tested in a qualitative assay. The role of a cell division factor from the root stele, uridine, has also been examined in these experiments. The results show that O-acetylated chitin oligosaccharides can induce root cortical cell divisions when delivered by microtargeting. For this effect it is essential that uridine is co-targeted. The foci of cortical cell division were often similar to root nodule primordia. Anatomical examination also revealed chimeric structures that share characteristics with lateral root and nodule primordia. Our data favour a model in which the oligosaccharide moiety of the rhizobial LCO induces cortical cell division and the fatty acyl moiety plays a role in transport of the LCO into the plant tissue.


Subject(s)
Chitin/pharmacology , Fabaceae/cytology , Plant Roots/cytology , Plants, Medicinal , Acetylation , Cell Division/drug effects , Chitin/chemistry , Fabaceae/anatomy & histology , Fabaceae/drug effects , Mitogens/pharmacology , Oligosaccharides/chemistry , Oligosaccharides/pharmacology , Plant Roots/drug effects , Pressure , Rhizobium/chemistry , Uridine/pharmacology
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