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1.
Int J Obstet Anesth ; 27: 85-8, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27378710

ABSTRACT

Stiff person syndrome is a rare neurologic disorder with an estimated incidence of 1:1000000. The underlying pathophysiology is truncal and proximal limb muscle stiffness resulting from continuous co-contracture of agonist and antagonist muscle groups concomitant with superimposed episodic muscle spasms. Loss of gamma-aminobutyric acid-mediated inhibition creates chronic excitation manifested by tonic agonist-antagonist muscle contraction. To date, only three case reports referred indirectly to the anesthetic management of parturients with Stiff person syndrome. The authors describe their management of a parturient with Stiff person syndrome who underwent urgent cesarean delivery under epidural anesthesia.


Subject(s)
Anesthesia, Epidural/methods , Anesthesia, Obstetrical/methods , Cesarean Section , Stiff-Person Syndrome/complications , Adult , Emergencies , Female , Humans , Pregnancy
2.
Diabetes Obes Metab ; 11(6): 632-6, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19175377

ABSTRACT

AIM: By acting as both insulin sensitizers and lipid-lowering agents, dual-acting peroxisome proliferator-activated receptors alpha/gamma (PPARalpha/gamma) agonists may be used to improve glucose tolerance in type 2 diabetic patients without inducing adiposity and body weight gain. Here, in an animal model of obesity and insulin resistance, the metabolic response to cevoglitazar, a dual PPARalpha/gamma, was characterized using a combination of in vivo and ex vivo magnetic resonance methodologies and compared to treatment effects of fenofibrate, a PPARalpha agonist, and pioglitazone, a PPARgamma agonist. METHODS: Four groups of fatty Zucker rats: (i) Vehicle; (ii) fenofibrate 150 mg/kg; (iii) pioglitazone 30 mg/kg; and (iv) cevoglitazar 5 mg/kg were investigated before and after treatment. Animals were fed a fat-enriched (54% kcal fat) diet for 6 weeks, 2 weeks high of fat-exposure alone followed by a 4-week dosing period. RESULTS AND CONCLUSIONS: Cevoglitazar was as effective as pioglitazone at improving glucose tolerance. However, unlike pioglitazone, both fenofibrate and cevoglitazar reduced BW gain and adiposity, independent of food intake. All three treatment regimens normalized intramyocellular lipids. Metabolic profiling showed that in the muscle cevoglitazar improves the lipid profile via both PPARalpha- and PPARgamma-mediated mechanisms. Pioglitazone reduced hepatic lipid accumulation, while cevoglitazar and fenofibrate reduced hepatic lipid concentration below baseline levels (p < 0.05). Metabolic profiling showed that in the liver, cevoglitazar functions largely through PPARalpha agonism resulting in increased beta-oxidation. Cevoglitazar only induced small changes to the lipid composition of visceral fat. In subcutaneous fat, however, cevoglitazar induced changes similar to those observed with fenofibrate suggesting export of fatty acids from this depot.


Subject(s)
Abdominal Fat/drug effects , Adiposity/drug effects , Body Weight/drug effects , Fenofibrate/pharmacology , Hypoglycemic Agents/pharmacology , Hypolipidemic Agents/pharmacology , Animals , Dietary Fats/administration & dosage , Disease Models, Animal , Insulin Resistance , Lipid Metabolism/drug effects , Male , Muscle, Skeletal/chemistry , Obesity/metabolism , PPAR alpha/agonists , PPAR gamma/agonists , Pioglitazone , Rats , Rats, Zucker , Thiazolidinediones/pharmacology
3.
Diabetologia ; 46 Suppl 1: M37-43, 2003 Mar.
Article in English | MEDLINE | ID: mdl-12652357

ABSTRACT

Nateglinide, a D-phenylalanine derivative, belongs to a new group of insulinotropic agents with rapid onset and short duration of action. These agents have been developed to reduce the risk of hypoglycaemia associated with pharmacological control and to decrease the likelihood of pancreatic beta-cell exhaustion. Nateglinide mediates the release of insulin from beta-cells by binding to the sulphonylurea receptors, which leads to the closure of ATP-sensitive K(+) channels. Increasing evidence from receptor binding, mechanistic and in vitro and in vivo insulin studies indicate unique pharmacodynamic and pharmacokinetic properties with nateglinide that are distinct from those of sulphonylureas. The time required by nateglinide to close beta-cell K(ATP) channels is comparable to that of glyburide but threefold and fivefold faster than repaglinide and glimepiride, respectively. Furthermore, its effects are rapidly reversed with an off-rate at the K(ATP) channel twice as fast as that of glyburide and glimepiride and five times faster than repaglinide. This results in a rapid and short insulin response characteristic of the physiological pattern of post-mealtime insulin release. Internalisation into beta-cells is not required for the action of nateglinide. Given that the kinetic profile of the agent is associated with selective enhancement of early-phase insulin secretion, nateglinide is expected to minimise post-meal hyperglycaemia with minimal propensity for hypoglycaemia.


Subject(s)
Cyclohexanes/pharmacology , Hypoglycemic Agents/pharmacology , Phenylalanine/analogs & derivatives , Phenylalanine/pharmacology , Potassium Channels, Inwardly Rectifying , ATP-Binding Cassette Transporters/metabolism , Adenosine Triphosphate/pharmacology , Cyclohexanes/metabolism , Cyclohexanes/pharmacokinetics , Humans , Hypoglycemic Agents/metabolism , Hypoglycemic Agents/pharmacokinetics , Insulin/metabolism , Insulin Secretion , Ion Channel Gating/drug effects , Islets of Langerhans/drug effects , Islets of Langerhans/metabolism , Kinetics , Nateglinide , Phenylalanine/metabolism , Phenylalanine/pharmacokinetics , Potassium Channels/drug effects , Potassium Channels/metabolism , Potassium Channels/physiology , Receptors, Drug/metabolism , Sulfonylurea Receptors
4.
Diabetes ; 50(10): 2287-95, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11574410

ABSTRACT

Hyperglycemia of diabetes is caused in part by perturbation of hepatic glucose metabolism. Hepatic glucokinase (GK) is an important regulator of glucose storage and disposal in the liver. GK levels are lowered in patients with maturity-onset diabetes of the young and in some diabetic animal models. Here, we explored the adenoviral vector-mediated overexpression of GK in a diet-induced murine model of type 2 diabetes as a treatment for diabetes. Diabetic mice were treated by intravenous administration with an E1/E2a/E3-deleted adenoviral vector encoding human hepatic GK (Av3hGK). Two weeks posttreatment, the Av3hGK-treated diabetic mice displayed normalized fasting blood glucose levels (95 +/- 4.8 mg/dl; P < 0.001) when compared with Av3Null (135 +/- 5.9 mg/dl), an analogous vector lacking a transgene, and vehicle-treated diabetic mice (134 +/- 8 mg/dl). GK treatment also resulted in lowered insulin levels (632 +/- 399 pg/ml; P < 0.01) compared with the control groups (Av3Null, 1,803 +/- 291 pg/ml; vehicle, 1,861 +/- 392 pg/ml), and the glucose tolerance of the Av3hGK-treated diabetic mice was normalized. No significant increase in plasma or hepatic triglycerides, or plasma free fatty acids was observed in the Av3hGK-treated mice. These data suggest that overexpression of GK may have a therapeutic potential for the treatment of type 2 diabetes.


Subject(s)
Diabetes Mellitus/genetics , Gene Expression/physiology , Glucokinase/genetics , Adenoviridae/genetics , Animals , Blood Glucose/analysis , Diabetes Mellitus/physiopathology , Eating , Fasting/blood , Gene Transfer Techniques , Genetic Vectors , Glucokinase/metabolism , Glycogen/metabolism , Humans , Insulin/blood , Liver/enzymology , Liver/metabolism , Male , Mice , Mice, Inbred C57BL , Phenotype , Triglycerides/metabolism
5.
Clin Cancer Res ; 7(8): 2448-57, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11489825

ABSTRACT

PURPOSE: Recent studies suggest that HER-2/neu specifically promotes the invasive capacity of tumor cells by up-regulating secretion of the proteolytic enzyme, urokinase-type plasminogen activator (uPA), or its inhibitor, plasminogen activator inhibitor-1 (PAI-1), in colon and gastric cancer. It was the purpose of this study to: (a) evaluate the association between HER-2/neu and uPA and PAI-1 expression in a large primary breast cancer cohort; (b) perform the first multivariate analysis, including HER-2/neu, uPA, and PAI-1 in breast cancer; and (c) define the effect of HER-2/neu overexpression on uPA and PAI-1 expression in breast cancer cells. EXPERIMENTAL DESIGN: HER-2/neu, uPA, and PAI-1 were measured as continuous variables by ELISA in primary breast cancer tissue extracts from 587 patients with clinical follow-up and analyzed for correlations with clinical outcome. Furthermore, a full-length human HER-2/neu cDNA was introduced into five human breast cancer cell lines to define the effects of HER-2/neu overexpression on uPA and PAI-1 expression. In addition, we tested whether HER-2/neu antibodies could reverse any given alteration of uPA and PAI-1 levels. RESULTS: Our findings indicate a weak positive association between HER-2/neu and uPA (r = 0.147; P < 0.001) and no association between HER-2/neu and PAI-1 (r = 0.07; P = 0.085). HER-2/neu overexpression (> or =400 fmol/mg) and high levels of uPA/PAI-1 (> or =5.5 ng/mg and/or > or =14 ng/mg, respectively) were significantly associated with shorter disease-free survival (DFS; P < 0.001 and P = 0.003) and metastasis-free survival (MFS; P = 0.015 and P < 0.001). Multivariate analysis revealed prognostic independence between HER-2/neu and the uPA/PAI-1 axis for DFS and MFS. Both uPA and PAI-1 had no significant discriminatory effect among HER-2/neu-positive patients for DFS. The prognostic value of HER-2/neu overexpression for MFS, however, was significantly enhanced by elevated uPA expression (P = 0.053). Stable transfection of the HER-2/neu gene into multiple human breast cancer cell lines resulted in consistent down-regulation of uPA or PAI-1 expression. In addition, anti-HER-2/neu antibodies did not significantly affect uPA or PAI-1 expression in human cancer cell lines naturally overexpressing HER-2/neu. CONCLUSIONS: The present findings suggest that the invasive phenotype elicited by HER-2/neu overexpression in breast cancer is not a direct effect of uPA or PAI-1 expression. HER-2/neu and the uPA/PAI-1 axis have been shown to affect the invasive capacity of breast cancer independently. Determination of uPA can provide significant additional prognostic information for MFS in HER-2/neu-positive and -negative patients.


Subject(s)
Breast Neoplasms/pathology , Plasminogen Activator Inhibitor 1/analysis , Receptor, ErbB-2/analysis , Urokinase-Type Plasminogen Activator/analysis , Adult , Antibodies, Monoclonal/pharmacology , Antibodies, Monoclonal, Humanized , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , Disease-Free Survival , Enzyme-Linked Immunosorbent Assay , Female , Gene Expression Regulation, Neoplastic/drug effects , Genetic Vectors/genetics , Humans , Middle Aged , Multivariate Analysis , Neoplasm Metastasis , Ovarian Neoplasms/genetics , Ovarian Neoplasms/pathology , Receptor, ErbB-2/genetics , Retroviridae/genetics , Trastuzumab , Tumor Cells, Cultured
6.
Diabetes ; 50(8): 1813-20, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11473043

ABSTRACT

The enzyme glucokinase (GK) plays a central role in glucose homeostasis. Hepatic GK activity is acutely controlled by the action of the GK regulatory protein (GKRP). In vitro evidence suggests that GKRP reversibly binds to GK and inhibits its activity; however, less is known about the in vivo function of GKRP. To further explore the physiological role of GKRP in vivo, we used an E1/E2a/E3-deficient adenoviral vector containing the cDNA encoding human GKRP (Av3hGKRP). High fat diet-induced diabetic mice were administered Av3hGKRP or a control vector lacking a transgene (Av3Null). Surprisingly, the Av3hGKRP-treated mice showed a significant improvement in glucose tolerance and had lower fasting blood glucose levels than Av3Null-treated mice. A coincident decrease in insulin levels indicated that the Av3hGKRP-treated mice had sharply improved insulin sensitivity. These mice also exhibited lower leptin levels, reduced body weight, and decreased liver GK activity. In vitro experiments indicated that GKRP was able to increase both GK protein and enzymatic activity levels, suggesting that another role for GKRP is to stabilize and/or protect GK. These data are the first to indicate the ability of GKRP to treat type 2 diabetes and therefore have significant implications for future therapies of this disease.


Subject(s)
Carrier Proteins , Diabetes Mellitus, Type 2/therapy , Genetic Therapy , Proteins/genetics , Proteins/metabolism , Adaptor Proteins, Signal Transducing , Animals , Avian Sarcoma Viruses/genetics , Blood Glucose/metabolism , Body Weight , Cells, Cultured , Diabetes Mellitus, Type 2/etiology , Dietary Fats/adverse effects , Fasting , Genetic Vectors , Glucokinase/antagonists & inhibitors , Glucose Intolerance/etiology , Glucose Intolerance/therapy , Glucose Tolerance Test , Hepatocytes/cytology , Hepatocytes/metabolism , Humans , Intracellular Signaling Peptides and Proteins , Liver/physiology , Liver Glycogen/metabolism , Male , Mice , Mice, Inbred C57BL , Organ Size , Rats , Rats, Sprague-Dawley , Simian virus 40/genetics , Transfection , Tumor Cells, Cultured
7.
Hum Mol Genet ; 9(10): 1481-6, 2000 Jun 12.
Article in English | MEDLINE | ID: mdl-10888598

ABSTRACT

Mannose-binding lectin (MBL) is an important complement-activating protein of the human innate immune system. Deficiency of MBL is associated with an increased risk of various infections and arises from three structural gene mutations in exon 1 (variants B, C and D) and/or the presence of a low efficiency promoter. The C allele is found in sub-Saharan Africa whereas the B allele is found elsewhere, suggesting that these mutations occurred after the suggested hominid migration out of Africa [100-150 000 years before present (BP)]. Paradoxically, these alleles may have a selective advantage in protection against intracellular pathogens and occur at particularly high frequencies in sub-Saharan Africa (C variant) and South America (B variant). Since hominids reached Australia at least 50 000 years ago, a study of MBL polymorphisms in the indigenous population was of interest. Using heteroduplex technology we found a paucity of MBL structural gene mutations in two population groups from geographically distinct regions. Of 293 individuals tested, 289 were wild-type and four were heterozygous for either the B or D allele. In each individual with an MBL mutation the HLA haplotype profile suggested some Caucasian admixture. We also found a restricted range of MBL promoter haplotypes and the serum MBL levels were higher than those of any other ethnic group studied to date (median 3.07 microg/ml). Our data suggest that the B mutation probably arose between 50 000 and 20 000 BP. Its absence from the founder gene pool of indigenous Australians may also partly explain their vulnerability to intracellular infections such as tuberculosis.


Subject(s)
Carrier Proteins/genetics , Mutation , Native Hawaiian or Other Pacific Islander/genetics , Polymorphism, Genetic , Alleles , Australia , Carrier Proteins/blood , Cohort Studies , Collectins , Enzyme-Linked Immunosorbent Assay , Exons , Gene Frequency , Genotype , Haplotypes , Heteroduplex Analysis , Heterozygote , Histocompatibility Testing , Humans , Linkage Disequilibrium , Promoter Regions, Genetic
8.
J Pharmacol Exp Ther ; 293(2): 444-52, 2000 May.
Article in English | MEDLINE | ID: mdl-10773014

ABSTRACT

Nateglinide (A-4166) is an amino acid derivative with insulinotrophic action in clinical development for treatment of type 2 diabetes. The aim of this study was to determine whether nateglinide's interaction at the K(ATP) channel/sulfonylurea receptor underlies its more rapid onset and shorter duration of action in animal models. Binding studies were carried out with membranes prepared from RIN-m5F cells and HEK-293 cells expressing recombinant human sulfonylurea receptor 1 (SUR1). The relative order for displacement of [(3)H]glibenclamide in competitive binding experiments with RIN-m5F cell membranes was glibenclamide > glimepiride > repaglinide > glipizide > nateglinide > L-nateglinide > tolbutamide. The results with HEK-293/recombinant human SUR1 cells were similar with the exception that glipizide was more potent than repaglinide. Neither nateglinide nor repaglinide had any effect on the dissociation kinetics for [(3)H]glibenclamide, consistent with both compounds competitively binding to the glibenclamide-binding site on SUR1. Finally, the inability to measure [(3)H]nateglinide binding suggests that nateglinide dissociates rapidly from SUR1. Direct interaction of nateglinide with K(ATP) channels in rat pancreatic beta-cells was investigated with the patch-clamp method. The relative potency for inhibition of the K(ATP) channel was repaglinide > glibenclamide > nateglinide. Kinetics of the inhibitory effect on K(ATP) current showed that the onset of inhibition by nateglinide was comparable to glibenclamide but more rapid than that of repaglinide. The time for reversal of channel inhibition by nateglinide was also faster than with glibenclamide and repaglinide. These results suggest that the unique characteristics of nateglinide are largely the result of its interaction at the K(ATP) channel.


Subject(s)
Carbamates/pharmacology , Cyclohexanes/pharmacology , Hypoglycemic Agents/pharmacology , Islets of Langerhans/metabolism , Membrane Proteins , Phenylalanine/analogs & derivatives , Piperidines/pharmacology , Potassium Channels/drug effects , Saccharomyces cerevisiae Proteins , Sulfonylurea Compounds/pharmacology , ATP-Binding Cassette Transporters , Animals , Binding, Competitive/drug effects , Carbamates/pharmacokinetics , Cell Membrane/drug effects , Cell Membrane/metabolism , Cell Separation , Cells, Cultured , Glucose/metabolism , Glyburide/pharmacology , Glycosyltransferases , Humans , Hypoglycemia/blood , Hypoglycemia/chemically induced , In Vitro Techniques , Insulin/metabolism , KATP Channels , Kinetics , Male , Nateglinide , Patch-Clamp Techniques , Phenylalanine/pharmacology , Piperidines/pharmacokinetics , Potassium Channel Blockers , Potassium Channels, Inwardly Rectifying , Rats , Rats, Sprague-Dawley , Repressor Proteins/biosynthesis , Repressor Proteins/genetics , Sulfonylurea Compounds/pharmacokinetics
9.
Biochem Mol Biol Int ; 47(6): 1009-18, 1999 Jun.
Article in English | MEDLINE | ID: mdl-10410247

ABSTRACT

A panel of twenty human testis cDNA clones were expressed in an Escherichia coli expression system and six clones were found to express identifiable fusion polypeptides. Expression was found to be influenced not only by the site of localization of the polypeptide in the host cells, but also by the temperature used for induction. This emphasized the need for cytoplasmic and periplasmic expression of new antigens of unknown properties, as well as the use of temperatures of 30 degrees C or lower. A majority of the expressed polypeptides were mainly in an insoluble form. By reducing the induction temperature to 30 degrees C production of the soluble fraction was further improved.


Subject(s)
Antigens/genetics , Escherichia coli/genetics , Testis/immunology , Cloning, Molecular , DNA, Complementary/genetics , Electrophoresis, Agar Gel , Gene Expression Regulation , Humans , Male , Oligopeptides , Peptides/genetics , Peptides/immunology , Temperature
10.
Thromb Haemost ; 81(3): 428-35, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10102473

ABSTRACT

Lipoprotein(a) [Lp(a)] is associated with atherosclerosis and with disease processes involving thrombosis. Lp(a) contains apoprotein (a) [apo(a)], which has a sequence highly homologous to plasminogen. Hence, Lp(a) binds directly to extracellular matrix, cellular plasminogen receptors and fibrin(ogen) and competes for the binding of plasminogen to these regulatory surfaces. These interactions may contribute to the proatherothrombogenic consequences of high Lp(a) levels. These interactions are mediated by lysine binding sites (LBS). Therefore, we examined the role of apo(a) kringle IV-10 [the only apo(a) kringle demonstrated to exhibit lysine binding activity in the intact lipoprotein] in the interaction of Lp(a) with these regulatory molecules. We have compared directly apo(a) KIV-10 with plasminogen K4 to examine whether these highly structurally homologous kringle modules are also functionally homologous. Futhermore, because the plasminogen K5-protease domain (K5-PD) binds directly to fibrin, we have also examined the ability of this plasminogen fragment to inhibit the interaction of Lp(a) with these regulatory molecules and with extracellular matrix. Apo(a) KIV-10 competed effectively for the binding of 125I-Lp(a) to these surfaces but was less effective than either intact Lp(a), plasminogen K4 or plasminogen. Plasminogen KS-PD was a better competitor than apo(a) KIV-10 for 125I-Lp(a) binding to the representative extracellular matrix, Matrigel, and to plasmin-treated fibrinogen. In contrast, plasminogen K5-PD did not compete for the interaction of Lp(a) with cells, although it effectively competed for plasminogen binding. These results suggest that Lp(a) recognizes sites in all of the regulatory molecules that are also recognized by apo(a) KIV-10 and that Lp(a) recognizes sites in extracellular matrix and in plasmin-modified fibrinogen that also are recognized by plasminogen K5-PD. Thus, the interaction of Lp(a) with cells is clearly distinct from that with extracellular matrix and with plasmin-treated fibrinogen and the recognition sites within Lp(a) and plasminogen for these regulatory molecules are not identical.


Subject(s)
Apolipoproteins A/metabolism , Kringles , Lipoprotein(a)/metabolism , Plasminogen/metabolism , Apolipoproteins A/chemistry , Blood Coagulation , Fibrinogen/chemistry , Fibrinogen/metabolism , Humans , Lipoprotein(a)/chemistry , Plasminogen/chemistry , Protein Binding
11.
Leg Med (Tokyo) ; 1(4): 238-49, 1999 Dec.
Article in English | MEDLINE | ID: mdl-12935475

ABSTRACT

We investigated the nucleotide substitution and insertion/deletion polymorphism of the HV1 region in mtDNA by sequencing blood samples from 150 unrelated Japanese and 120 unrelated Chinese and revealed 108 sequence types from the Japanese group and 87 sequence types from the Chinese. Some substitutions were characteristic of East Asian populations as compared with data reported on Caucasian populations, and some were area-specific among East Asians. The level of genetic diversity and genetic identity revealed by this system was superior to that obtained by VNTR systems for nuclear DNA. These results show the usefulness of mtDNA sequencing in forensic examination for individual identification. We also found some sequence variations in the homopolymeric tract of cytosine (np16180-16194 in the Anderson's reference sequence) that might suggest some hints regarding the mechanisms for and the development of heteroplasmic length variations in this tract.

12.
BMJ ; 317(7172): 1599D, 1998 Dec 05.
Article in English | MEDLINE | ID: mdl-9836691
13.
Am J Hum Genet ; 62(2): 435-49, 1998 Feb.
Article in English | MEDLINE | ID: mdl-9463317

ABSTRACT

The mitochondrial D-loop hypervariable segment 1 (mt HVS1) between nucleotides 15997 and 16377 has been examined in aboriginal Australian people from the Darling River region of New South Wales (riverine) and from Yuendumu in central Australia (desert). Forty-seven unique HVS1 types were identified, varying at 49 nucleotide positions. Pairwise analysis by calculation of BEPPI (between population proportion index) reveals statistically significant structure in the populations, although some identical HVS1 types are seen in the two contrasting regions. mt HVS1 types may reflect more-ancient distributions than do linguistic diversity and other culturally distinguishing attributes. Comparison with sequences from five published global studies reveals that these Australians demonstrate greatest divergence from some Africans, least from Papua New Guinea highlanders, and only slightly more from some Pacific groups (Indonesian, Asian, Samoan, and coastal Papua New Guinea), although the HVS1 types vary at different nucleotide sites. Construction of a median network, displaying three main groups, suggests that several hypervariable nucleotide sites within the HVS1 are likely to have undergone mutation independently, making phylogenetic comparison with global samples by conventional methods difficult. Specific nucleotide-site variants are major separators in median networks constructed from Australian HVS1 types alone and for one global selection. The distribution of these, requiring extended study, suggests that they may be signatures of different groups of prehistoric colonizers into Australia, for which the time of colonization remains elusive.


Subject(s)
DNA, Mitochondrial/genetics , Genetic Variation , Native Hawaiian or Other Pacific Islander/genetics , Phylogeny , Australia , Base Sequence , Climate , Consensus Sequence , DNA/blood , Desert Climate , Humans , Models, Genetic , Molecular Sequence Data , New South Wales , Polymerase Chain Reaction/methods , Reproducibility of Results
15.
Tissue Antigens ; 50(2): 192-6, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9271829

ABSTRACT

Three previously unknown A24-related alleles were identified by PCR-SSO typing and confirmed by DNA sequencing in Australian Aboriginal populations (A*2406, 2413) and in individuals of South American descent (A*2414). A*2406 and A*2413 both have two adjacent (but different) nucleotide substitutions in codon 156 in exon 3 compared to A*2402, resulting in a single amino acid replacement in each allele. The South American A*2414 is apparently a hybrid between A2 and A24 with a segment of the A*24 sequence between codons 95 and 107 in exon 3 replaced with the A*02 sequence. Interallelic sequence exchange is the most likely mechanism in the generation of all three novel alleles. Compared to A*2402, the four amino acid substitutions in the A*2414 molecule would be expected to significantly change the shape of the peptide binding cleft, leading to selection of different peptide ligands. The single amino acid replacements in position 156 of the two Australian Aboriginal A*24 alleles may also have significant functional effects. In particular, Trp replacing Gln in position 156 (A*2406) is predicted to markedly reduce the volume of the peptide binding cleft, influence the interaction of HLA pockets with peptide side chains, and therefore, cause major changes in peptide presentation. These newly defined alleles may reflect the adaptive process of HLA genes to local environments.


Subject(s)
Alleles , Genes, MHC Class I/genetics , HLA-A Antigens/genetics , Amino Acid Sequence , Australia , Base Sequence , DNA/analysis , DNA Primers/chemistry , Female , Gene Frequency , HLA-A24 Antigen , Humans , Molecular Sequence Data , Native Hawaiian or Other Pacific Islander , Polymerase Chain Reaction
16.
Electrophoresis ; 18(9): 1538-43, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9378118

ABSTRACT

Population structure has been revealed in mitochondrial D-loop segment 1 (mt DLS1) sequences from Australian Aboriginal people in the Darling River region of NSW (Riverine) and from Yuendumu in central Australia (Desert). Comparison with five published global studies reveals that these Australians demonstrate greatest divergence from some Africans, least from Papua New Guinea (PNG) highlanders, and only slightly more divergence from some Pacific groups (Indonesian, Asian, Samoan, and coastal PNG). A median networks approach demonstrates that several hypervariable nucleotide sites within the DLS1 are likely to have undergone mutation independently. A comprehensive evaluation of specific nucleotide variants with the large amount of global sequence data now available has been achieved in three stages of analysis: (i) identification of key nucleotide variants (from the Cambridge reference sequence) in the Aboriginal Australian by pairwise comparison and construction of a 'local' median network, (ii) identification of key nucleotide variants in a selected global sample including Australian mtDLS1 types most different from each other, and (iii) calculation of the frequency with which these key nucleotide sites occur as variants in a greatly extended global sample. The third stage of the analysis revealed that nucleotides 16287 and 16356 are unique markers for representatives from the northern Riverine region. A 'thymine' at nucleotide 16223 is an informative signature of African and several identifiable non-African DLS1 types, whereas the 'cytosine' form is a marker for European, Pacific, and some Asian populations.


Subject(s)
DNA, Mitochondrial/chemistry , Genetic Variation , Native Hawaiian or Other Pacific Islander/genetics , Australia , Gene Frequency , Humans , New South Wales
17.
Aust N Z J Psychiatry ; 31(3): 434, 1997 Jun.
Article in English | MEDLINE | ID: mdl-9226094
18.
Pathology ; 29(4): 392-8, 1997 Nov.
Article in English | MEDLINE | ID: mdl-9423221

ABSTRACT

We have applied genotyping methods of PCR-SSOP and PCR-RFLP to three, bi-allelic platelet specific antigen systems HPA-1 (Pla), HPA-3 (Bak) and HPA-5 (Br). This combination of techniques offers flexibility for high volume or rapid typing. The phenotype and genotype frequencies of alleles from the three systems differ significantly between the Yuendumu Australian Aboriginals (Wailbri) and Australian Caucasians. The major differences are the very low frequencies of HPA-1b and HPA-3b in Yuendumu Aboriginals which are potentially relevant to platelet transfusion in patients of Australian Aboriginal descent.


Subject(s)
Alleles , Antigens, Human Platelet/genetics , Native Hawaiian or Other Pacific Islander/genetics , White People/genetics , Australia , Epitopes/genetics , Gene Frequency , Genetic Linkage , Humans , Integrin beta3 , Polymerase Chain Reaction , Polymorphism, Restriction Fragment Length
20.
Am J Hum Genet ; 58(5): 1017-24, 1996 May.
Article in English | MEDLINE | ID: mdl-8651262

ABSTRACT

The origins of aboriginal Australians and their relationship with New Guineans and neighboring Southeast Asians remains controversial. We have studied the alpha-globin haplotype composition of an aboriginal tribe from central Australia, to address some of the ambiguities of previous studies. Australians have a haplotype repertoire that is shared with New Guinea highlanders, a fact that strongly supports a common origin of these two populations. Further, Australians and New Guinea highlanders have a different set of alpha haplotypes from Southeast Asians and a lower genetic diversity. This, coupled with the presence of many locally specific central Australian haplotypes, suggests that much of the original diversity was lost in a population bottleneck prior to or during the early colonization of Sahul and that subsequent recovery of diversity has been accompanied by the generation of new haplotypes. These conclusions contrast with some previous genetic studies suggesting links between Australians, coastal New Guineans, and present-day Southeast Asians. Much of this discrepancy appears to be due to more recent Southeast Asian admixture on the north coast of Australia.


Subject(s)
Globins/genetics , Native Hawaiian or Other Pacific Islander/genetics , Australia , Genetics, Population , Haplotypes , Humans , New Guinea
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