[Identification of Clinical Isolates of the Bacillus cereus Group and Their Characterization by Mass Spectrometry and Electron Microscopy].

Bacillus cereus is a spore-forming bacterium found in the environment mainly in soil. Bacillus spores are known to be extremely resistant not only to environmental factors, but also to various sanitation regimes. This leads to spore contamination of toxin-producing strains in hospital and food equipment and, therefore, poses a great threat to human health. Two clinical isolates identified as B. cereus and B. cytotoxicus were used in the present work. It was shown that their calcium ion content was significantly lower than that of the reference strains. According to electron microscopy, one of the SRCC 19/16 isolates has an enlarged exosporium, and the SRCC 1208 isolate has large electron-dense inclusions of an unclear nature during sporulation. We can assume that these contain a biologically active component with a cytotoxic effect and possibly play a role in pathogenesis. Comparative chemical, biochemical, physiological, and ultrastructural analysis of spores of clinical isolates and reference strains of B. cereus was performed. The results we obtained deepen our understanding of the properties of spores that contribute to the increased pathogenicity of B. cereus group species.

New insights into ligand binding by plant lipid transfer proteins: A case study of the lentil Lc-LTP2.

Lipid transfer proteins (LTPs) are an important class of plant proteins containing an internal cavity and binding hydrophobic ligands. Although LTP structures and functions are well studied, mechanisms of ligand binding remain unclear. Earlier, we discovered the lentil lipid transfer protein Lc-LTP2 capable of binding and transfer various ligands. We have shown that the "bottom" entrance of the Lc-LTP2 cavity takes part in attachment to the micelle surface and in lipids uptake. Here, we studied the role of Arg45 and Tyr80, located at the "bottom" entrance, in Lc-LTP2 ligand binding. We obtained recombinant mutant analogs of Lc-LTP2 (R45A, Y80A, R45A/Y80A), investigated their ability to bind fatty acids and lysolipids, as well as performed molecular modeling of the protein-ligand complexes. We showed that replacement of one or both residues led to a change of the internal hydrophobic cavity dimensions. As a result, lipids may change their orientation into the protein cavity, and thereby binding ability of mutant analogs may be affected as well. In the present work, we revealed an important role of Arg45 and Tyr80 in stabilization of the Lc-LTP2 complexes with both fatty acids and lysolipids with different ligand orientation.

Analysis of the Serum Cytokine Profile in Allergic Patients Opens a Way to Personalized Treatment of Allergy.

Plant lipid transfer proteins and homologues of the main birch pollen allergen Bet v 1 are involved in the development of allergic reactions of varying severity to plant foods and pollen. In this study, the sera from patients with tree and weed pollen allergies in the Moscow region were examined. The levels of IL-4, IL-5, IL-9, IL-10, IL-13, IL-17A, IFNγ, TNFα, and TNFß cytokines were determined in the sera of patients with specific IgE antibodies to Bet v 1 and Pru p 3 allergens. It was confirmed that patients with pollen allergy are often characterized by Th2 response of the immune system, though other mechanisms of allergy development occurred in some cases. The data obtained demonstrate the necessity of detailed analysis of the individual mechanism of allergic reactions and patient-centered approach to the personalized allergy treatment.

Lipid Transfer Proteins As Components of the Plant Innate Immune System: Structure, Functions, and Applications.

Among a variety of molecular factors of the plant innate immune system, small proteins that transfer lipids and exhibit a broad spectrum of biological activities are of particular interest. These are lipid transfer proteins (LTPs). LTPs are interesting to researchers for three main features. The first feature is the ability of plant LTPs to bind and transfer lipids, whereby these proteins got their name and were combined into one class. The second feature is that LTPs are defense proteins that are components of plant innate immunity. The third feature is that LTPs constitute one of the most clinically important classes of plant allergens. In this review, we summarize the available data on the plant LTP structure, biological properties, diversity of functions, mechanisms of action, and practical applications, emphasizing their role in plant physiology and their significance in human life.

Structural and Functional Characterization of Recombinant Isoforms of the Lentil Lipid Transfer Protein.

The recombinant isoforms Lc-LTP1 and Lc-LTP3 of the lentil lipid transfer protein were overexpressed in E. coli cells. It was confirmed that both proteins are stabilized by four disulfide bonds and characterized by a high proportion of the α-helical structure. It was found that Lc-LTP1 and Lc-LTP3 possess antimicrobial activity and can bind fatty acids. Both isoforms have the ability to bind specific IgE from sera of patients with food allergies, which recognize similar epitopes of the major peach allergen Pru p 3. Both isoforms were shown to have immunological properties similar to those of other plant allergenic LTPs, but Lc-LTP3 displayed a less pronounced immunoreactivity.

[Fauna of Rare and Poorly Studied Ectoparasites of bats in Southern Siberia].

Forty-six chiropteran specimens from seven species have been captured on the territory of Southern Siberia. From them, 676 ectoparasites of 16 species (gamasid mites and insects) were collected. The bat fly Basilia mongolensis mongolensis Theodor, 1966 was found in Russia for the first time. The gamasid mites Spinturnix maedai Uchikawa et Wada, 1979 and Macronyssus hosonoi Uchikawa, 1979 have not previously been registered in Siberia. Several species have been recorded on new hosts. Three species of gamasid mites out of the genus Macronyssus are, probably, new to science. New data on the ecology of low-abundant and understudied bat species belonging to the Siberian-Far Eastern complex have been provided.

[Thrombodynamic properties of arterial and venous blood in ischemic patients in preoperative and early postoperative periods after coronary artery bypass grafting].

In the preoperative period ischemic patients show a significant increase in thrombodynamic properties of fibrin clots. It is more than at a half of patients in the presurgical period as in an arterial, and venus blood the spontaneous growth of a clot comes to light that is practically not observed at healthy people. In the early postoperative period ischemic patients demonstrate a general sharp decrease in thrombodynamic properties of fibrin clots, but in arterial blood, as opposed to venous blood, such properties sharply grow. Based on the data obtained it may be concluded that in ischemic patients venous blood levels cannot be used as a judgement for arterial blood fibrin clot properties.

[Medical and Dosimetric Register of the Siberian Group of Chemical Enterprises Personnel--the Basis for the Evaluation of Chronic, Radiation Exposure Effects].

The characteristic of medical and dosimetric register database of Siberian Group of Chemical Enterprises personnel is represented. This characteristic includes the description of the database structure, main sources of information, quantitative composition of the cohort under study, methods of evaluation of the external and internal irradiation doses, modern data on cancer incidence and reasons of death. The database is the basis for estimating the risk of the cancer and non-cancer effects after a long-term radiation exposure and dependence of "dose-response" at different levels: from population and group to cell and molecular. Now the database of register contains the information about more than 66,500 employees at the Siberian Group of Chemical Enterprises, about 22,000 of whom were exposed to external irradiation and more than 7500 employees--to internal irradiation. The register is the information resource of a large biological material bank. Using this bank, the research of chronic radiation exposure genetic effects and markers of individual radio sensitivity is performed.

[Faunistic complexes and changes in species composition of horseflies (Diptera: Tabanidae) recorded during 1950-2009 in the forest zone of Omsk region].

Faunistic study of horseflies was performed during 2007-2009 in forest zone of Omsk region; 6206 horsefly specimens from 27 species were collected. Taking into consideration the collections of Tabanidae made by Alifanov and Rastegaeva during the 1950s, 30 species of horseflies are present in the territory under consideration. The species of Tabanidae characteristic for European steppe and European forest zone were found to be dominants; the species of Siberian taiga zone were rather numerous; representatives of Far Eastern forest faunistic complex occurred sporadically. In comparison with 1950s, the pattern of domination of the horsefly fauna has been changed. Hybomitra montana montana, H. nitidif ronts, and Tabanus miki left the group of dominants, while H. muehlfeldi, which was not recorded previously, became numerous, and the abundance of H. ciureai is significantly increased.

Effective permeability of fractured porous media with power-law distribution of fracture sizes.

The permeability of geological formations which contain fractures with a power-law size distribution is addressed numerically by solving the coupled Darcy equations in the fractures and in the surrounding porous medium. Two reduced parameters are introduced which allow for a unified description over a very wide range of the fracture characteristics, including their shape, density, size distribution, and possibly size-dependent permeability. Two general models are proposed for loose and dense fracture networks, and they provide a good representation of the numerical data throughout the investigated parameter range.

[A new parasitological index for the estimation of peculiarities of the relationships between parasite and its host, and biotope of the host].

A new parasitological index (hostal-topical index) for the estimation of the degree of ectoparasite's relationship with its host and biotope of the host is proposed: [formula: see text], where [formula: see text]--hostal-topical index; n--amount of ectoparasites of the given species on the given host species in the biotope; N--amount of ectoparasites of all species from the given taxonomic group on the given host species in the biotope; n1--amount of hosts of the given species in the biotope; N1--amount of hosts of all species from the given taxonomic group in the biotope; n2--amount of ectoparasites of the given species in the biotope; N2--amount of ectoparasites of all species from the given taxonomic group in the biotope. Values [formula: see text] < 0.1 indicate that there is a distinct relationship with the biotope in spite of the host; values fallen into the range 0.1 < [formula: see text] < 0.5 indicate a moderate relationship with the biotope through the host; values [formula: see text] > 0.5 indicate a significant relationship with the host. By means of this index we have analyzed peculiarity of several parasitic species of fleas and gamasid mites to their hosts, biotopes, and biotope through the host. As it was found on the materials from different native zones and subzones of the Omsk Region (Western Siberia, Russia), values of the hostal-topical index for polyhostal parasitic species are lesser than those for oligohostal species. Values of this index can be different for the same species in the different native zones and subzones as well as in the different biotopes of the same native zone (subzone).

[Landscape aspects of host-parasite relationships between parasitic arthropods and the narrow-skulled vole Microtus gregalis (Rodentia) in Western Siberia]. / Landshaftnye aspekty parazito-khoziainnykh otnoshenii chlenistonogikh i uzkocherepnoi polevki Microtus gregalis (Rodentia) v Zapadnoi Sibiri.

Comparative zoogeographic analysis of outcomes accumulated in the course of long-term investigation the parasitic and free-living arthropods (Acarina: Parasitiformes; Insecta: Siphonaptera) associated with three subspecies of the narrow-skulled vole (Microtus gregalis gregalis, M. g. major, M. g. eversmanni) in various landscape zones and subzones in a flat part of Western Siberia, foothills of the Altai-Sayan mountain system and mountains of Southwest Altai. The obtained data, on the one hand, recover specific features of certain parasite communities that reflect ecological peculiarity of a host species living in conditions of concrete landscapes, on the other hand, a high degree of similarity between species set of some ectoparasitic and nidicolous arthropod groups from different subspecies of M. gregalis. The systematic list of ectoparasitic and nidicolous arthropods associated with M. gregalis and representing Gamasoidea mites, ticks and fleas is provided.

[Parasite fauna of the water vole (Arvicola terrestris) and its nests in the south of Western Siberia]. / Parazitofauna vodianoi polevki (Arvicola terrestris) i ee gnezd na iuge Zapadnoi Sibiri.

Fauna of parasitic and free-living arthropods associated the water vole Arvicola terestris and its nests in various landscape zones and subzones of the south of Western Siberia has been studied. Total abundance of gamasid mites and ticks (Gamasoidea, Ixodidae), fleas and nidicolous arthropods in nests is high, and the set of nidicolous and parasite species is quite diverse, but everywhere the parasite fauna is characterized by a small amount of species reaching a high abundance: Laelaps muris on the voles, Haemogamasus ambulans in nests, Ixodes apronophorus and Megpbotris walkeri both on the voles and nests. Parasitic arthropods living on the voles or in their nests are characterized by higher and stables indices of infection, while these parameters for free-living arthropods were variable. The list of mesostigmatic mites parasitizing the water vole and its nests in the south of Western Siberia (Adamovich, Krylov, 2001) has been considerably supplemented. In total, the fauna of parsitiform mites (Acari: Mesostigmata and Ixodiddes) and fleas (Siphonaptera) associated with the water vole in the south of Western Siberia is represented by 97 arthropod species of 19 families, including 74 species of mesostigmatic mites (Gamasoidea), 6 species of ticks (Ixodidae) and 17 species of fleas.

Two-phase flow through fractured porous media.

Two-phase flow in fractured porous media is investigated by means of a direct and complete numerical solution of the generalized Darcy equations in a three-dimensional discrete fracture description. The numerical model applies to arbitrary fracture network geometry, and to arbitrary distributions of permeabilities in the porous matrix and in the fractures. It is used here in order to obtain the steady-state macroscopic relative permeabilities of random fractured media. Results are presented as functions of the mean saturation and are discussed in comparison with simple models.

[Improvement of methods for indication of the causative agents of natural focal infections under conditions of emergency situations with epidemiologic consequences]. / Sovershenstvovanie metodov indikatsii vozbuditelei prirodnoochagovykh infektsii v usloviakh chrezvychainykh situatsii s épidemiologicheskimi posledstviiami.

The improvement of the laboratory diagnostics of quarantine infections (QI) is aimed at obtaining the result at a shorter time, the simplification of making serological reactions, enhancing the specificity and sensitivity of the results due to the introduction of new = generation diagnostic preparations into practical use. The wide practical use of erythrocytic and immunofluorescent diagnostic preparations has shown that they cannot completely meet all requirements simultaneously. The optimized scheme of the indication of the causative agents of QI must ensure the combined use, at different stages of the analysis, of magneto-immunosorbents, enzyme immunoassay, as well as immuno-suspension preparations for the simplification and acceleration of obtaining results with sufficient sensitivity and specificity provided.

[Parasite-host relationship of flies and small mammals in the Omsk region]. / Parazito-khoziainnye sviazi blokh i melkikh mlekopitaiushchikh Omskoi oblasti.

A generalized analysis of data on a flea fauna, range of their hosts in various natural zones, and features of parasite-host relationships between fleas and small mammals obtained in the Omsk province during long term researches in 1963-1997 is given. 35 flea species are recorded. The most mass species both on animals and in their nest is Ctenophthalmus assimilis; the numerous species are Amalareus penicilliger, Megabothros rectangulatus, M. walkeri, Peromyscopsylla silvatica, Ctenophthalmus unciatus, Palaropsylla sorecis, Doratopsilla birulai, Neopsylla pleskei, Hystrichopsylla talpae; the usual species--Ceratopsyllus garei, M. calcarifer, M. turbidus, Frontopsylla elata, Amphipsylla sibirica, A. kuznetzowi, Peromyscopsylla dasycnema, Radinopsylla integella, Catalagia dacenkoi. Other species are less numerous or infrequent. The general infection rate of the flea populations on rodents and insectivores makes 30.4%. For certain species it reaches 65.1% (on red-backed vole Cletrionomys rutilus), for regular groups--86.9% (on shrews of the genus Sorex). The greatest variety of the flea populations is observed on Microtus arvalis, the least one--on Sorex caecutiens and S. daphaenodon. In the nests of small mammals the variety of fleas is significantly lower. Based on the index of flea species relative "loyalty" to small mammals and their nest we have recognized 6 groups of fleas.