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3.
Amino Acids ; 31(4): 403-7, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16583318

ABSTRACT

No influence of isotopic substitution in deuterium-substituted tryptophan on the florescence excitation spectrum has previously been found out. Here, the isotopic effects of electronic excitation of deuterium-substituted tryptophan were experimentally and theoretically analyzed for first time. It was shown a short-wave shift of the UV-absorption maximum at 220 nm corresponding to the 360 cal/mol and short-wave shift for fluorescence spectrum corresponding to the 210 cal/mol. To account for this effect, the quantum chemical calculations of the geometric and electron structure, frequencies of normal vibrations and transition energies have been performed. The isotopic effects originate from the zero-point energies of ground and excited states. It was found that isotopic shifts depend on the position of isotope in the molecule and kind of transition. So, it can be utilized in the analysis of proteins structure and complexation.


Subject(s)
Tryptophan/chemistry , Deuterium/chemistry , Kinetics , Molecular Structure , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Thermodynamics
4.
Bioorg Chem ; 31(6): 453-63, 2003 Dec.
Article in English | MEDLINE | ID: mdl-14613766

ABSTRACT

The effect of the three-dimensional structure of polypeptides and proteins on their ability to undergo isotopic exchange under the action of spillover hydrogen (SH) in the high temperature solid state catalytic isotope exchange reaction (HSCIE) was theoretically and experimentally studied. The HSCIE reaction in the beta-galactosidase protein from Thermoanaerobacter ethanolicus (83kDa) was studied. The influence of the beta-galactosidase structure on isotopic exchange as peptide fragments with spillover tritium was studied. The most accessible peptide fragment, which does not contribute to alpha-helix and beta-strand formations (KEMQKE215-220), had the largest relative reactivity. The one located in the contact area between the subunits (YLRDSE417-422) showed the smallest relative reactivity. The relative reactivities of these peptides differ more than 150 times. Data collected during a study devoted to the HSCIE reaction of the beta-galactosidase protein indicate that the HSCIE reaction might be employed for acquiring information about their three-dimensional structure and protein-protein interactions. The results of ab initio calculations have shown that alpha-helix formation in polypeptides decreases the reactivity in HSCIE. Hydrogen exchange in the alpha-helical fragment Trp1-Leu8 of zervamycin IIB was also analyzed using theoretical methods. It was shown by ab initio quantum-chemical calculations that the high degree of substitution of C(alpha)H for tritium in Gln3 might be associated with the participation of electron donor O and N atoms in transition state stabilization in the HSCIE reaction.


Subject(s)
Hydrogen/chemistry , Isotope Labeling/methods , Peptides/chemistry , Tritium/chemistry , beta-Galactosidase/chemistry , Bacillaceae , Catalysis , Escherichia coli , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Peptaibols , Peptide Fragments/chemistry , Protein Structure, Secondary , beta-Galactosidase/metabolism
5.
Amino Acids ; 24(3): 325-33, 2003 Apr.
Article in English | MEDLINE | ID: mdl-12707815

ABSTRACT

The mechanism of the reaction of high temperature solid state catalytic isotope exchange (HSCIE) of hydrogen in peptides with spillover-tritium at 140-180 degrees C was analyzed. This reaction was used for preparing [(3)H]enkephalins such as [(3)H]DALG with specific activity of 138 Ci/mmol and [(3)H]LENK with specific activity of 120 Ci/mmol at 180 degrees C. The analogues of [(3)H]ACTG(4-10) with specific activity of 80 Ci/mmol, [(3)H]zervamicin IIB with specific activity of 70 Ci/mmol and [(3)H]conotoxin G1 with specific activity 35 Ci/mmol were produced. The obtained preparations completely retained their biological activity. [(3)H]Peptide analysis using (3)H NMR spectroscopy on a Varian UNITY-600 spectrometer at 640 MHz was carried out. The reaction ability of amino fragments in HSCIE was shown to depend both of their structures and on the availability and the mobility of the peptide chain. The reaction of HSCIE with the beta-galactosidase from Termoanaerobacter ethanolicus was studied. The selected HSCIE conditions allow to prepare [(3)H] beta-galactosidase with specific activity of 1440 Ci/mmol and completely retained its the enzymatic activity.


Subject(s)
Enkephalin, Leucine-2-Alanine/analogs & derivatives , Isotope Labeling/methods , Peptides/analysis , Proteins/analysis , Amino Acid Sequence , Animals , Brain/metabolism , Catalysis , Conotoxins/chemistry , Conotoxins/metabolism , Enkephalin, Leucine/chemistry , Enkephalin, Leucine/metabolism , Enkephalin, Leucine-2-Alanine/chemistry , Enkephalin, Leucine-2-Alanine/metabolism , Galactosidases/chemistry , Galactosidases/metabolism , Hydrogen/chemistry , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Sequence Data , Peptaibols , Peptides/chemistry , Peptides/metabolism , Proteins/metabolism , Radioligand Assay , Rats , Receptors, Opioid/metabolism , Temperature , Tritium/chemistry
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