Robust and low-cost open-source device for detecting infectious microorganisms by loop-mediated isothermal amplification.

Loop-Mediated Isothermal Amplification (LAMP) is a useful technique for detecting infectious microorganisms in human fluids since it performs similarly to conventional PCR, the results are obtained faster and no thermocyclers or complex devices are required. Since only two isothermal blocks (95 °C to lyse cells and 65 °C for DNA amplification) are needed, LAMP is particularly suited for applications in Low- and Middle-Income Countries (LMICs). To validate such assumption, we first designed and tested Arduino-controlled LAMP thermoblocks to process a considerable number of samples simultaneously with a low-energy consumption to enable routine use under worst-case conditions (no main power source and low ambient temperatures). The thermoblocks were tested when battery-powered at temperature down to 5 °C, showing high stability in well temperatures (<0.8 °C). The charge required for both thermoblocks to simultaneously achieve the target temperatures after switching on and to keep their working temperatures were 4.1 A·h and 2.4 A·h/h, respectively. Second, we implemented a low-cost viewer with LEDs and filters to detect the fluorescent LAMP reaction. All the components required for the instrument are for general purpose and readily available by e-commerce. Thus, the LAMP device allows for considerable autonomy by using a typical car battery in rural and itinerant healthcare or field hospitals in LMICs, even under difficult environmental conditions.

Wide-field Mueller matrix polarimetry for spectral characterization of basic biological tissues: Muscle, fat, connective tissue, and skin.

This study investigates the polarimetric properties of skin, skeletal muscle, connective tissue, and fat using Mueller matrix imaging. It aims to compare the polarimetric characteristics of these tissues and explore how they evolve with wavelength. Additionally, the temporal evolution of certain tissues during meat aging is studied, providing insights into the dynamic behavior of polarimetric properties over time. The research employs back-scattering configuration and the differential decomposition analysis method of Mueller matrix images. Both in-vivo and ex-vivo experiments were conducted using a consistent instrument setup to ensure reliable analysis. The results reveal wavelength-dependent variations in tissue properties, including an increase in depolarization with wavelength. Significant differences in the polarimetric characteristics of meat tissues, particularly for skeletal muscle, are observed. Over a 24-h period, intensity, diattenuation, and retardation experience alterations, being the decreased retardation in skeletal muscle and the increased retardation in fat the most notable ones.

Compact formulation of the transparent-absorbing isotropic interface electromagnetic problem.

A complete formulation of the electromagnetic problem corresponding to the light incidence from a transparent to an absorbing medium (isotropic materials) is developed. According to the standard separation in s and p polarization cases, we explicitly obtain all the relevant formulas that relate the polarization and Poynting vectors of the reflected and transmitted beams with the incident ones. Overall, the procedure is compact since it is short and complete.

Mueller matrix polarimetry with 3D integral imaging.

In this paper, we introduce the Mueller matrix imaging concepts for 3D Integral Imaging Polarimetry. The Mueller matrix of a complex scene is measured and estimated with 3D integral imaging. This information can be used to analyze the complex polarimetric behavior of any 3D scene. In particular, we show that the degree of polarization can be estimated at any selected plane for any arbitrary synthetic illumination source which may be difficult to produce in practice. This tool might open new perspectives for polarimetric analysis in the 3D domain. Also, we illustrate that 2D polarimetric images are noisier than 3D reconstructed polarimetric integral imaging. To the best of our knowledge, this is the first report on Mueller matrix polarimetry in 3D Integral Imaging.

Relation between 2D/3D chirality and the appearance of chiroptical effects in real nanostructures.

The optical activity of fabricated metallic nanostructures is investigated by complete polarimetry. While lattices decorated with nanoscale gammadia etched in thin metallic films have been described as two dimensional, planar nanostructures, they are better described as quasi-planar structures with some three dimensional character. We find that the optical activity of these structures arises not only from the dissymmetric backing by a substrate but, more importantly, from the selective rounding of the nanostructure edges. A true chiroptical response in the far-field is only allowed when the gammadia contain these non-planar features. This is demonstrated by polarimetric measurements in conjunction with electrodynamical simulations based on the discrete dipole approximation that consider non-ideal gammadia. It is also shown that subtle planar dissymmetries in gammadia are sufficient to generate asymmetric transmission of circular polarized light.

Dark modes and Fano resonances in plasmonic clusters excited by cylindrical vector beams.

Control of the polarization distribution of light allows tailoring the electromagnetic response of plasmonic particles. By rigorously extending the generalized multiparticle Mie theory, we show that focused cylindrical vector beams (CVB) can be used to efficiently excite dark plasmon modes in nanoparticle clusters. In addition to the small radiative damping and large field enhancement associated to dark modes, excitation with CVB can give place to unusual phenomenology like the formation of electromagnetic cold spots and the generation of Fano resonances in highly symmetric clusters. Overall, the results show the potential of CVB to tailor the plasmonic response of nanoparticle clusters in a unique way.

Use of information on the manufacture of samples for the optical characterization of multilayers through a global optimization.

We present a procedure for the optical characterization of thin-film stacks from spectrophotometric data. The procedure overcomes the intrinsic limitations arising in the numerical determination of many parameters from reflectance or transmittance spectra measurements. The key point is to use all the information available from the manufacturing process in a single global optimization process. The method is illustrated by a case study of solgel applications.

Spatial width and power-content ratio of hard-edge diffracted beams.

On the basis of the intensity-moment formalism, certain analytical relationships are obtained for both the angular domain and the size of a transverse region of the beam that ensure a power content of at least 75% of the total power. As an illustrative application, the analytical results are compared with the exact values (numerically computed) of the amplitude of a lowest-order Gaussian beam diffracted by slits.

Ultraviolet optical and microstructural properties of MgF2 and LaF3 coatings deposited by ion-beam sputtering and boat and electron-beam evaporation.

Single layers of MgF2 and LaF3 were deposited upon superpolished fused-silica and CaF2 substrates by ion-beam sputtering (IBS) as well as by boat and electron beam (e-beam) evaporation and were characterized by a variety of complementary analytical techniques. Besides undergoing photometric and ellipsometric inspection, the samples were investigated at 193 and 633 nm by an optical scatter measurement facility. The structural properties were assessed with atomic-force microscopy, x-ray diffraction, TEM techniques that involved conventional thinning methods for the layers. For measurement of mechanical stress in the coatings, special silicon substrates were coated and analyzed. The dispersion behavior of both deposition materials, which was determined on the basis of various independent photometric measurements and data reduction techniques, is in good agreement with that published in the literature and with the bulk properties of the materials. The refractive indices of the MgF2 coatings ranged from 1.415 to 1.440 for the wavelength of the ArF excimer laser (193 nm) and from 1.435 to 1.465 for the wavelength of the F2 excimer laser (157 nm). For single layers of LaF3 the refractive indices extended from 1.67 to 1.70 at 193 nm to approximately 1.80 at 157 nm. The IBS process achieves the best homogeneity and the lowest surface roughness values (close to 1 nm(rms)) of the processes compared in the joint experiment. In contrast to MgF2 boat and e-beam evaporated coatings, which exhibit tensile mechanical stress ranging from 300 to 400 MPa, IBS coatings exhibit high compressive stress of as much as 910 MPa. A similar tendency was found for coating stress in LaF3 single layers. Experimental results are discussed with respect to the microstructural and compositional properties as well as to the surface topography of the coatings.