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1.
Beilstein J Org Chem ; 17: 1041-1047, 2021.
Article in English | MEDLINE | ID: mdl-34025809

ABSTRACT

Deep eutectic solvents (DESs) have gained attention as green and safe as well as economically and environmentally sustainable alternative to the traditional organic solvents. Here, we report the combination of an atom-economic, very convenient and inexpensive reagent, such as BH3NH3, with bio-based eutectic mixtures as biorenewable solvents in the synthesis of nitroalkanes, valuable precursors of amines. A variety of nitrostyrenes and alkyl-substituted nitroalkenes, including α- and ß-substituted nitroolefins, were chemoselectively reduced to the nitroalkanes, with an atom economy-oriented, simple and convenient experimental procedure. A reliable and easily reproducible protocol to isolate the product without the use of any organic solvent was established, and the recyclability of the DES mixture was successfully investigated.

2.
Org Biomol Chem ; 18(39): 7789-7813, 2020 Oct 14.
Article in English | MEDLINE | ID: mdl-32975252

ABSTRACT

Ammonia borane NH3·BH3 is considered a promising material for hydrogen storage and release, and is attracting increasing attention as a relatively inexpensive, atom economy-convenient and viable reagent for developing new green synthetic transformations. The present review offers a wide overview on the use of AB in the reduction of organic compounds, and highlights the versatility of this reagent, due to the possibility of modulating its activity employing different strategies, which include the use of transition metals, p-block species, organocatalysts and FLP systems.

3.
J Biol Chem ; 292(47): 19209-19225, 2017 11 24.
Article in English | MEDLINE | ID: mdl-28972160

ABSTRACT

The ubiquitin-proteasome system (UPS) is responsible for most selective protein degradation in eukaryotes and regulates numerous cellular processes, including cell cycle control and protein quality control. A component of this system, the deubiquitinating enzyme USP14, associates with the proteasome where it can rescue substrates from degradation by removal of the ubiquitin tag. We previously found that a small-molecule inhibitor of USP14, known as IU1, can increase the rate of degradation of a subset of proteasome substrates. We report here the synthesis and characterization of 87 variants of IU1, which resulted in the identification of a 10-fold more potent USP14 inhibitor that retains specificity for USP14. The capacity of this compound, IU1-47, to enhance protein degradation in cells was tested using as a reporter the microtubule-associated protein tau, which has been implicated in many neurodegenerative diseases. Using primary neuronal cultures, IU1-47 was found to accelerate the rate of degradation of wild-type tau, the pathological tau mutants P301L and P301S, and the A152T tau variant. We also report that a specific residue in tau, lysine 174, is critical for the IU1-47-mediated tau degradation by the proteasome. Finally, we show that IU1-47 stimulates autophagic flux in primary neurons. In summary, these findings provide a powerful research tool for investigating the complex biology of USP14.


Subject(s)
Embryo, Mammalian/metabolism , Enzyme Inhibitors/pharmacology , Fibroblasts/metabolism , Neurons/metabolism , Pyrroles/pharmacology , Ubiquitin Thiolesterase/physiology , tau Proteins/metabolism , Animals , Cells, Cultured , Cytoplasm/metabolism , Embryo, Mammalian/cytology , Embryo, Mammalian/drug effects , Enzyme Inhibitors/chemical synthesis , Fibroblasts/cytology , Fibroblasts/drug effects , Mice , Mice, Inbred C57BL , Mice, Knockout , Neurons/cytology , Neurons/drug effects , Proteasome Endopeptidase Complex/metabolism , Proteolysis , Pyrroles/chemical synthesis , Rats, Sprague-Dawley , Ubiquitin/metabolism , Ubiquitination
4.
J Biol Chem ; 287(41): 34400-9, 2012 Oct 05.
Article in English | MEDLINE | ID: mdl-22904326

ABSTRACT

The ubiquitin-proteasome system is the major pathway for selective protein degradation in eukaryotes. Despite extensive study of this system, the mechanisms by which proteasome function and cell growth are coordinated remain unclear. Here, we identify Spg5 as a novel component of the ubiquitin-proteasome system. Spg5 binds the regulatory particle of the proteasome and the base subassembly in particular, but it is excluded from mature proteasomes. The SPG5 gene is strongly induced in the stationary phase of budding yeast, and spg5Δ mutants show a progressive loss of viability under these conditions. Accordingly, during logarithmic growth, Spg5 appears largely dispensable for proteasome function, but during stationary phase the proteasomes of spg5Δ mutants show both structural and functional defects. This loss of proteasome function is reflected in the accumulation of oxidized proteins preferentially in stationary phase in spg5Δ mutants. Thus, Spg5 is a positive regulator of the proteasome that is critical for survival of cells that have ceased to proliferate due to nutrient limitation.


Subject(s)
Carrier Proteins/metabolism , Proteasome Endopeptidase Complex/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Carrier Proteins/genetics , Cell Proliferation , Gene Deletion , Proteasome Endopeptidase Complex/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae Proteins/genetics , Ubiquitin/genetics , Ubiquitin/metabolism
5.
Dev Cell ; 16(6): 844-55, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19531355

ABSTRACT

In humans, the frequency with which meiotic chromosome mis-segregation occurs increases with age. Whether age-dependent meiotic defects occur in other organisms is unknown. Here, we examine the effects of replicative aging on meiosis in budding yeast. We find that aged mother cells show a decreased ability to initiate the meiotic program and fail to express the meiotic inducer IME1. The few aged mother cells that do enter meiosis complete this developmental program but exhibit defects in meiotic chromosome segregation and spore formation. Furthermore, we find that mutations that extend replicative life span also extend the sexual reproductive life span. Our results indicate that in budding yeast, the ability to initiate and complete the meiotic program as well as the fidelity of meiotic chromosome segregation decrease with cellular age and are controlled by the same pathways that govern aging of asexually reproducing yeast cells.


Subject(s)
Meiosis , Saccharomycetales/cytology , Saccharomycetales/growth & development , Chromosome Segregation , DNA, Ribosomal/metabolism , Gene Expression Regulation, Fungal , Molecular Sequence Data , Mutation/genetics , Nondisjunction, Genetic , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Saccharomycetales/genetics , Saccharomycetales/physiology , Spores, Fungal/cytology , Time Factors , Transcription Factors/genetics , Transcription Factors/metabolism
6.
Science ; 317(5840): 916-24, 2007 Aug 17.
Article in English | MEDLINE | ID: mdl-17702937

ABSTRACT

Aneuploidy is a condition frequently found in tumor cells, but its effect on cellular physiology is not known. We have characterized one aspect of aneuploidy: the gain of extra chromosomes. We created a collection of haploid yeast strains that each bear an extra copy of one or more of almost all of the yeast chromosomes. Their characterization revealed that aneuploid strains share a number of phenotypes, including defects in cell cycle progression, increased glucose uptake, and increased sensitivity to conditions interfering with protein synthesis and protein folding. These phenotypes were observed only in strains carrying additional yeast genes, which indicates that they reflect the consequences of additional protein production as well as the resulting imbalances in cellular protein composition. We conclude that aneuploidy causes not only a proliferative disadvantage but also a set of phenotypes that is independent of the identity of the individual extra chromosomes.


Subject(s)
Aneuploidy , Cell Proliferation , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/physiology , Cell Division , Chromosomes, Fungal/genetics , G1 Phase , Gene Expression Regulation, Fungal , Genes, Fungal , Glucose/metabolism , Haploidy , Phenotype , Protein Synthesis Inhibitors/pharmacology , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae Proteins/biosynthesis , Saccharomyces cerevisiae Proteins/metabolism , Temperature , Transcription, Genetic
7.
Cell ; 128(3): 477-90, 2007 Feb 09.
Article in English | MEDLINE | ID: mdl-17289568

ABSTRACT

Kinetochores of sister chromatids attach to microtubules emanating from the same pole (coorientation) during meiosis I and microtubules emanating from opposite poles (biorientation) during meiosis II. We find that the Aurora B kinase Ipl1 regulates kinetochore-microtubule attachment during both meiotic divisions and that a complex known as the monopolin complex ensures that the protein kinase coorients sister chromatids during meiosis I. Furthermore, the defining of conditions sufficient to induce sister kinetochore coorientation during mitosis provides insight into monopolin complex function. The monopolin complex joins sister kinetochores independently of cohesins, the proteins that hold sister chromatids together. We propose that this function of the monopolin complex helps Aurora B coorient sister chromatids during meiosis I.


Subject(s)
Cell Cycle Proteins/metabolism , Kinetochores/metabolism , Meiosis , Protein Kinases/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/metabolism , Aurora Kinases , Cell Cycle Proteins/genetics , Chromatids/metabolism , Chromosomal Proteins, Non-Histone/metabolism , Chromosome Segregation , Chromosomes, Fungal/metabolism , Gene Deletion , Intracellular Signaling Peptides and Proteins , Mitosis , Nuclear Proteins/metabolism , Protein Serine-Threonine Kinases , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Spindle Apparatus/metabolism , Cohesins
8.
Mol Cell Biol ; 25(11): 4767-81, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15899877

ABSTRACT

During the mitotic cell cycle, microtubule depolymerization leads to a cell cycle arrest in metaphase, due to activation of the spindle checkpoint. Here, we show that under microtubule-destabilizing conditions, such as low temperature or the presence of the spindle-depolymerizing drug benomyl, meiotic budding yeast cells arrest in G(1) or G(2), instead of metaphase. Cells arrest in G(1) if microtubule perturbation occurs as they enter the meiotic cell cycle and in G(2) if cells are already undergoing premeiotic S phase. Concomitantly, cells down-regulate genes required for cell cycle progression, meiotic differentiation, and spore formation in a highly coordinated manner. Decreased expression of these genes is likely to be responsible for halting both cell cycle progression and meiotic development. Our results point towards the existence of a novel surveillance mechanism of microtubule integrity that may be particularly important during specialized cell cycles when coordination of cell cycle progression with a developmental program is necessary.


Subject(s)
Meiosis/drug effects , Microtubules/drug effects , Saccharomyces cerevisiae/genetics , Benomyl/pharmacology , Cell Cycle/drug effects , Cell Cycle/genetics , Chromosome Pairing/drug effects , Cold Temperature , Cyclin B , Cyclin-Dependent Kinases/metabolism , Cyclins/metabolism , Fungicides, Industrial/pharmacology , Gene Expression/drug effects , Gene Expression Profiling , Meiosis/genetics , Microtubules/metabolism , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/physiology , Saccharomyces cerevisiae Proteins/metabolism
9.
Nat Cell Biol ; 6(5): 451-7, 2004 May.
Article in English | MEDLINE | ID: mdl-15107861

ABSTRACT

Propagation of waves of biochemical activities through consecutive stages of the cell cycle is essential to execute the steps of cell division in a strict temporal order. Mechanisms that ensure the proper amplitude and timing of these waves are poorly understood. Using a synthetic gene circuit, we show that a transcriptional activator driven by yeast cell-cycle promoters propagates transcriptional oscillations with substantial damping. Although regulated nuclear translocation has been implicated in the timing of oscillatory events, mathematical analysis shows that increasing the rate of nuclear transport is an example of a general regulatory principle, which enhances the fidelity of wave propagation. Indeed, increasing the constitutive import rate of the activator counteracts the damping of waves and concurrently preserves the intensity of the signal. In contrast to the regulatory range of nuclear transport, the range of mRNA turnover considerably limits transcriptional wave propagation. This classification of cellular processes outlines potential regulatory mechanisms that can contribute to faithful transmission of oscillations at different stages of the cell cycle.


Subject(s)
Active Transport, Cell Nucleus/physiology , Biological Clocks/physiology , Cell Cycle/physiology , Models, Biological , Transcription, Genetic , Gene Expression Regulation, Fungal , Mathematics , Promoter Regions, Genetic , RNA, Messenger/metabolism , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/physiology , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Trans-Activators/metabolism
10.
Mol Cell Biol ; 23(14): 5018-30, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12832486

ABSTRACT

The mitotic exit network (MEN), a Ras-like signaling cascade, promotes the release of the protein phosphatase Cdc14 from the nucleolus and is essential for cells to exit from mitosis in Saccharomyces cerevisiae. We have characterized the functional domains of one of the MEN components, the protein kinase Cdc15, and investigated the role of these domains in mitotic exit. We show that a region adjacent to Cdc15's kinase domain is required for self-association and for binding to spindle pole bodies and that this domain is essential for CDC15 function. Furthermore, we find that overexpression of CDC15 lacking the C-terminal 224 amino acids results in hyperactivation of MEN and premature release of Cdc14 from the nucleolus, suggesting that this domain within Cdc15 functions to inhibit MEN signaling. Our findings indicate that multiple modes of MEN regulation occur through the protein kinase Cdc15.


Subject(s)
Cell Cycle Proteins/metabolism , GTP-Binding Proteins/metabolism , Mitosis , Saccharomyces cerevisiae Proteins/metabolism , Binding Sites , Cell Cycle/genetics , Cell Cycle Proteins/genetics , Cell Nucleolus/genetics , Cell Nucleolus/metabolism , GTP-Binding Proteins/genetics , Green Fluorescent Proteins , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Monomeric GTP-Binding Proteins/genetics , Monomeric GTP-Binding Proteins/metabolism , Protein Kinases/genetics , Protein Kinases/metabolism , Protein Serine-Threonine Kinases , Protein Structure, Tertiary/physiology , Protein Transport/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Signal Transduction , Spindle Apparatus/genetics , Spindle Apparatus/metabolism , Telophase/genetics
11.
Am J Med Genet B Neuropsychiatr Genet ; 120B(1): 1-10, 2003 Jul 01.
Article in English | MEDLINE | ID: mdl-12815731

ABSTRACT

The goal of these experiments was to understand DNA changes relevant to schizophrenia. This work compared DNA of monozygotic (MZ) twins surrounding (CAG)(n) repeating sequences, and characterized the relationship between fragile sites and schizophrenia. Twelve twin-pairs, previously classified as MZ and 18 unrelated sib-pairs, from seven families were studied. Eight twin-pairs were affected by schizophrenia, four concordantly and four discordantly. DNA comparisons were made using profiles of electrophoretic size fractionations of PCR amplified (CAG)(n) containing genomic fragments. These profiles were generated by a new method, developed by us, called targeted genomic differential display (TGDD). Surprisingly, the number of peak profile differences in MZ twin-pairs discordant for schizophrenia was greater than the concordantly ill twins and the well twins and, in some cases, overlapped the range of sib-pairs. These results might mean that some twins were not MZ but it was not possible to definitively test these samples for zygosity. Alternatively, the results might be explained as an increased mutation rate (or genomic instability) around (CAG)(n) sites in individuals afflicted with schizophrenia. Also, we uncovered an association of schizophrenia (i.e., a linkage of chromosomal abnormalities and gene localizations) with fragile sites spread throughout the genome (chi(2), P = 0.001). Furthermore, it appears that an increasing number of genes linked to schizophrenia are associated with (CAG)(n) sequences. Fragile sites and (CAG)(n) repeat sequences are known to be unstable. We speculate the association of genomic instability with schizophrenia accounts for seemingly disparate biological and environmental factors that influence disease occurrence.


Subject(s)
Chromosomal Instability , Diseases in Twins/genetics , Schizophrenia/genetics , Adolescent , Adult , Chromosome Fragile Sites , DNA/analysis , DNA Fingerprinting , Female , Genetic Markers , Humans , Male , Trinucleotide Repeats , Twins, Monozygotic/genetics
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