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1.
Anat Rec (Hoboken) ; 307(3): 611-632, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37702738

ABSTRACT

Industrialization influenced several facets of lifestyle, including softer nutrient-poor diets that contributed to vitamin D deficiency in post-industrzialized populations, with concomitantly increased dental problems. Here we simulated a post-industrialized diet in a mouse model to test the effects of diet texture and vitamin D level on mandible and third molar (M3) forms. Mice were raised on a soft diet with vitamin D (VitD) or without it (NoD), or on a hard diet with vitamin D. We hypothesized that a VitD/hard diet is optimal for normal mandible and tooth root form, as well as for timely M3 initiation. Subsets of adult NoD/soft and VitD/soft groups were bred to produce embryos that were micro-computed tomography (µCT) scanned to stage M3 development. M3 stage did not differ between embryos from mothers fed VitD and NoD diets, indicating that vitamin D does not affect timing of M3 onset. Sacrificed adult mice were µCT-scanned, their mandibles 3D-landmarked and M3 roots were measured. Principal component (PC) analysis described the largest proportion of mandible shape variance (PC1, 30.1%) related to diet texture, and nominal shape variance (PC2, 13.8%) related to vitamin D. Mice fed a soft diet had shorter, relatively narrower, and somewhat differently shaped mandibles that recapitulated findings in human populations. ANOVA and other multivariate tests found significantly wider M3 roots and larger root canals in mice fed a soft diet, with vitamin D having little effect. Altogether our experiments using a mouse model contribute new insights about how a post-industrial diet may influence human craniodental variation.


Subject(s)
Vitamin D Deficiency , Vitamin D , Humans , X-Ray Microtomography , Mandible/diagnostic imaging , Tooth Root/diagnostic imaging
3.
bioRxiv ; 2023 May 12.
Article in English | MEDLINE | ID: mdl-37214859

ABSTRACT

Morphogenesis requires highly coordinated, complex interactions between cellular processes: proliferation, migration, and apoptosis, along with physical tissue interactions. How these cellular and tissue dynamics drive morphogenesis remains elusive. Three dimensional (3D) microscopic imaging poses great promise, and generates elegant images. However, generating even moderate through-put quantified images is challenging for many reasons. As a result, the association between morphogenesis and cellular processes in 3D developing tissues has not been fully explored. To address this critical gap, we have developed an imaging and image analysis pipeline to enable 3D quantification of cellular dynamics along with 3D morphology for the same individual embryo. Specifically, we focus on how 3D distribution of proliferation relates to morphogenesis during mouse facial development. Our method involves imaging with light-sheet microscopy, automated segmentation of cells and tissues using machine learning-based tools, and quantification of external morphology via geometric morphometrics. Applying this framework, we show that changes in proliferation are tightly correlated to changes in morphology over the course of facial morphogenesis. These analyses illustrate the potential of this pipeline to investigate mechanistic relationships between cellular dynamics and morphogenesis during embryonic development.

4.
J Hum Evol ; 161: 103072, 2021 12.
Article in English | MEDLINE | ID: mdl-34628299

ABSTRACT

A tenet of mammalian, including primate dental evolution, is the Inhibitory Cascade Model, where first molar (M1) size predicts in a linear cline the size and onset time of the second (M2) and third (M3) molars: a larger M1 portends a progressively smaller and later-developing M2 and M3. In contemporary modern Homo sapiens, later-developing M3s are less likely to erupt properly. The Inhibitory Cascade Model is also used to predict molar sizes of extinct taxa, including fossil Homo. The extent to which Inhibitory Cascade Model predictions hold in contemporary H. sapiens molars is unclear, including whether this tenet informs about molar initiation, development, and eruption. We tested these questions here. In our radiographic sample of 323 oral quadrants and molar rows from contemporary humans based on mesiodistal crown lengths, we observed the distribution of molar proportions with a central tendency around parity (M1 = M2 = M3) that parsed into 13 distinct molar size ratio patterns. These patterns presented at different frequencies (e.g., M1 > M2 > M3 in about one-third of cases) that reflected whether the molar row was located in the maxilla or mandible and included both linear (e.g., M1 < M2 < M3) and nonlinear molar size ratio progressions (e.g., M1 > M2 < M3). Up to four patterns were found in the same subject's mouth. Lastly, M1 size alone does not predict M3 size, developmental timing, or eruption; rather, M2 size is integral to predicting M3 size. Our study indicates that human molar size is genetically 'softwired' and sensitive to factors local to the human upper jaw vs. lower jaw. The lack of a single stereotypical molar size ratio for contemporary H. sapiens suggests that predictions of fossil H. sapiens molar sizes using the Inhibitory Cascade Model must be made with caution.


Subject(s)
Fossils , Molar , Animals , Humans , Mandible , Maxilla , Tooth Eruption
5.
J Dev Biol ; 9(1)2021 Mar 12.
Article in English | MEDLINE | ID: mdl-33809066

ABSTRACT

For humans and other mammals to eat effectively, teeth must develop properly inside the jaw. Deciphering craniodental integration is central to explaining the timely formation of permanent molars, including third molars which are often impacted in humans, and to clarifying how teeth and jaws fit, function and evolve together. A factor long-posited to influence molar onset time is the jaw space available for each molar organ to form within. Here, we tested whether each successive molar initiates only after a minimum threshold of space is created via jaw growth. We used synchrotron-based micro-CT scanning to assess developing molars in situ within jaws of C57BL/6J mice aged E10 to P32, encompassing molar onset to emergence. We compared total jaw, retromolar and molar lengths, and molar onset times, between upper and lower jaws. Initiation time and developmental duration were comparable between molar upper and lower counterparts despite shorter, slower-growing retromolar space in the upper jaw, and despite size differences between upper and lower molars. Timing of molar formation appears unmoved by jaw length including space. Conditions within the dental lamina likely influence molar onset much more than surrounding jaw tissues. We theorize that molar initiation is contingent on sufficient surface area for the physical reorganization of dental epithelium and its invagination of underlying mesenchyme.

6.
J Anat ; 239(1): 12-31, 2021 07.
Article in English | MEDLINE | ID: mdl-33629373

ABSTRACT

Animal body parts evolve with variable degrees of integration that nonetheless yield functional adult phenotypes: but, how? The analysis of modularity with Anatomical Network Analysis (AnNA) is used to quantitatively determine phenotypic modules based on the physical connection among anatomical elements, an approach that is valuable to understand developmental and evolutionary constraints. We created anatomical network models of the head, forelimb, and hindlimb of two taxa considered to represent a 'generalized' eutherian (placental: mouse) and metatherian (marsupial: opossum) anatomical configuration and compared them with our species, which has a derived eutherian configuration. In these models, nodes represent anatomical units and links represent their physical connection. Here, we aimed to identify: (1) the commonalities and differences in modularity between species, (2) whether modules present a potential phylogenetic character, and (3) whether modules preferentially reflect either developmental or functional aspects of anatomy, or a mix of both. We predicted differences between networks of metatherian and eutherian mammals that would best be explained by functional constraints, versus by constraints of development and/or phylogeny. The topology of contacts between bones, muscles, and bones + muscles showed that, among all three species, skeletal networks were more similar than musculoskeletal networks. There was no clear indication that humans and mice are more alike when compared to the opossum overall, even though their musculoskeletal and skeletal networks of fore- and hindlimbs are slightly more similar. Differences were greatest among musculoskeletal networks of heads and next of forelimbs, which showed more variation than hindlimbs, supporting previous anatomical studies indicating that in general the configuration of the hindlimbs changes less across evolutionary history. Most observations regarding the anatomical networks seem to be best explained by function, but an exception is the adult opossum ear ossicles. These ear bones might form an independent module because the incus and malleus are involved in forming a functional primary jaw that enables the neonate to attach to the teat, where this newborn will complete its development. Additionally, the human data show a specialized digit 1 module (thumb/big toe) in both limb types, likely the result of functional and evolutionary pressures, as our ape ancestors had highly movable big toes and thumbs.


Subject(s)
Mice/anatomy & histology , Models, Theoretical , Opossums/anatomy & histology , Phylogeny , Skeleton/anatomy & histology , Animals , Forelimb/anatomy & histology , Head/anatomy & histology , Hindlimb/anatomy & histology , Humans , Mice/genetics , Mice/growth & development , Opossums/genetics , Opossums/growth & development
7.
J Anat ; 237(2): 367-378, 2020 08.
Article in English | MEDLINE | ID: mdl-32266720

ABSTRACT

Dentine- and enamel-forming cells secrete matrix in consistent rhythmic phases, resulting in the formation of successive microscopic growth lines inside tooth crowns and roots. Experimental studies of various mammals have proven that these lines are laid down in subdaily, daily (circadian), and multidaily rhythms, but it is less clear how these rhythms are initiated and maintained. In 2001, researchers reported that lesioning the so-called master biological clock, the suprachiasmatic nucleus (SCN), halted daily line formation in rat dentine, whereas subdaily lines persisted. More recently, a key clock gene (Bmal1) expressed in the SCN in a circadian manner was also found to be active in dentine- and enamel- secretory cells. To probe these potential neurological and local mechanisms for the production of rhythmic lines in teeth, we reexamined the role of the SCN in growth line formation in Wistar rats and investigated the presence of daily lines in Bmal1 knockout mice (Bmal1-/- ). In contrast to the results of the 2001 study, we found that both daily and subdaily growth lines persisted in rat dentine after complete or partial SCN lesion in the majority of individuals. In mice, after transfer into constant darkness, daily rhythms continued to manifest as incremental lines in the dentine of each Bmal1 genotype (wild-type, Bmal+/- , and Bmal1-/- ). These results affirm that the manifestation of biological rhythms in teeth is a robust phenomenon, imply a more autonomous role of local biological clocks in tooth growth than previously suggested, and underscore the need further to elucidate tissue-specific circadian biology and its role in incremental line formation. Investigations of this nature will strengthen an invaluable system for determining growth rates and calendar ages from mammalian hard tissues, as well as documenting the early lives of fossil hominins and other primates.


Subject(s)
Biological Clocks/genetics , Circadian Rhythm/genetics , Dentin/growth & development , ARNTL Transcription Factors/genetics , Animals , Mice , Mice, Knockout , Rats , Rats, Wistar
8.
Methods Mol Biol ; 1922: 197-210, 2019.
Article in English | MEDLINE | ID: mdl-30838578

ABSTRACT

Visualizing tooth organs from their earliest inception as they actually appear in three dimensions has, until recently, been difficult due to the technical obstacle of imaging these tiny, translucent, low-density embryonic craniodental tissues. Related to this obstacle, quantifying craniodental morphology has been confounded by the time consuming need to physically section and then digitally photograph and reconstruct these images of tissues into 3D volumes. Here we provide a simple solution in the form of an overnight silver albumin tissue stain for whole embryos. Because it is differentially absorbed by embryonic tissues, this stain generates the contrast needed to detect and visualize unmineralized dental tissues. Stained specimens can be scanned using either desktop or synchrotron micro-computed tomography systems, generating digital 3D datasets of whole embryos that can immediately be used to assess dental morphology and histology. Craniodental structures can then be measured with high precision and accuracy using 3D image analysis software.


Subject(s)
Embryo, Mammalian/diagnostic imaging , Odontogenesis , Silver Staining/methods , Tooth/embryology , X-Ray Microtomography/methods , Animals , Contrast Media , Imaging, Three-Dimensional/methods , Synchrotrons , Tooth/anatomy & histology , Tooth/diagnostic imaging
9.
Dev Dyn ; 248(8): 744-755, 2019 08.
Article in English | MEDLINE | ID: mdl-30875130

ABSTRACT

BACKGROUND: p63 is an evolutionarily ancient transcription factor essential to vertebrate tooth development. Our recent gene expression screen comparing wild-type and "toothless" p63-/- mouse embryos implicated in tooth development several new genes that we hypothesized act downstream of p63 in dental epithelium, where p63 is also expressed. RESULTS: Via in situ hybridization and immunohistochemistry, we probed mouse embryos (embryonic days 10.5-14.5) and spotted gar fish embryos (14 days postfertilization) for these newly linked genes, Cbln1, Cldn23, Fermt1, Krt15, Pltp and Prss8, which were expressed in mouse and gar dental epithelium. Loss of p63 altered expression levels but not domains. Expression was comparable between murine upper and lower tooth organs, implying conserved gene functions in maxillary and mandibular dentitions. Our meta-analysis of gene expression databases supported that these genes act within a p63-driven gene regulatory network important to tooth development in mammals and more evolutionary ancient vertebrates (fish, amphibians). CONCLUSIONS: Cbln1, Cldn23, Fermt1, Krt15, Pltp, and Prss8 were expressed in mouse and fish dental epithelium at placode, bud, and/or cap stages. We theorize that these genes participate in cell-cell adhesion, cell polarity, and extracellular matrix signaling to support dental epithelium integrity, folding, and epithelial-mesenchymal cross talk during tooth development.


Subject(s)
Gene Expression Regulation, Developmental , Odontogenesis/genetics , Signal Transduction , Tooth , Trans-Activators/metabolism , Animals , Embryo, Mammalian , Embryo, Nonmammalian , Epithelium/embryology , Fishes , Gene Regulatory Networks , Mice , Transcription Factors/metabolism , Vertebrates/embryology , Vertebrates/genetics
10.
Evol Dev ; 20(5): 146-159, 2018 09.
Article in English | MEDLINE | ID: mdl-29998528

ABSTRACT

In p63-null mice (p63-/- ), teeth fail to form but the mandible forms normally; conversely, the upper jaw skeleton is malformed. Here we explored whether lack of dental tissues contributed to midfacial dysmorphologies in p63-/- mice by testing if facial prominence defects appeared before odontogenesis failed. We also investigated gene dose effects by testing if one wild type (WT) p63 allele (p63+/- ) was sufficient for normal upper jaw skeleton formation. We micro-CT scanned PFA-fixed p63-/- , p63+/- , and WT (p63+/+ ) adult and embryonic mice aged E10-E14. Next, we landmarked mandibular (MdP), maxillary (MxP) and nasal prominences (NPs), and facial bones. 3D landmark data were assessed using Principal Component, Canonical Variate, Partial Least Squares, and other statistical analyses. The p63-/- embryos showed MxP and NP malformations by E12, despite the presence of dental tissues. MdP shape was comparable among p63-/- , p63+/- , and p63+/+ embryos. Upper jaw shape was comparable between p63+/+ and p63+/- adults. The upper jaw and its dentition both require p63 signaling, but not each other's presence, to form properly. One WT p63 allele enables normal midfacial morphogenesis; gene dose may be a target for jaw macroevolution. Jaw-specific genetic mechanisms likely integrate the evo-devo of dentitions with upper versus lower jaws.


Subject(s)
Biological Evolution , Craniofacial Abnormalities/genetics , Maxilla/embryology , Animals , Embryo, Mammalian/anatomy & histology , Embryo, Mammalian/metabolism , Maxilla/anatomy & histology , Mice , Mice, Inbred C57BL , Odontogenesis , Phosphoproteins/genetics , Phosphoproteins/metabolism , Tooth/pathology , Trans-Activators/genetics , Trans-Activators/metabolism
11.
Dev Dyn ; 247(5): 779-787, 2018 05.
Article in English | MEDLINE | ID: mdl-29396915

ABSTRACT

BACKGROUND: The p63 gene is integral to the development of many body parts including limb, palate, teeth, and urogenital tract. Loss of p63 expression may alter developmental rate, which is crucial to normal morphogenesis. To validate a novel, unbiased embryo phenotyping software tool, we tested whether delayed development contributes to the pathological phenotype of a p63 mouse mutant (p63-/- ). We quantified dysmorphology in p63-/- embryos and tested for universal growth delay relative to wild-type (WT) embryos. Fixed embryos (n = 6; p63-/- ) aged day (E) 15.5 were micro-CT scanned and quantitatively analyzed using a digital WT atlas that defined volumetric differences between p63-/- and WT embryos. RESULTS: p63-/- embryos showed a growth delay of approximately 22 hr (0.9 days). Among the E15.5 mutants, overall size was closest to WT E14.6 mice but shape was closest to WT E14.0. The atlas clearly identified in p63-/- embryos malformations of epithelial derivatives including limbs, tail, urogenital structures, brain, face, and tooth. CONCLUSIONS: The software atlas technique described the p63-/- phenotype as a combination of developmental delay (i.e., heterochrony) and malformation (i.e., pathological shape; failed organogenesis). This study identifies for the first time global and local roles for p63 in prenatal growth and development. Developmental Dynamics 247:779-787, 2018. © 2018 Wiley Periodicals, Inc.


Subject(s)
Embryo, Mammalian/metabolism , Morphogenesis/physiology , Phosphoproteins/metabolism , Trans-Activators/metabolism , Animals , Embryo, Mammalian/cytology , Gene Expression Regulation, Developmental/genetics , Gene Expression Regulation, Developmental/physiology , Mice , Mice, Knockout , Morphogenesis/genetics , Phosphoproteins/genetics , Trans-Activators/genetics
12.
J Exp Zool B Mol Dev Evol ; 328(4): 321-333, 2017 06.
Article in English | MEDLINE | ID: mdl-28251806

ABSTRACT

Highly processed diets eaten by postindustrial modern human populations coincide with higher frequencies of third molar impaction, malocclusion, and temporomandibular joint disorders that affect millions of people worldwide each year. Current treatments address symptoms, not causes, because the multifactorial etiologies of these three concerns mask which factors incline certain people to malocclusion, impaction, and/or joint issues. Deep scientific curiosity about the origins of jaws and dentitions continues to yield rich insights about the developmental genetic mechanisms that underpin healthy craniodental morphogenesis and integration. Mounting evidence from evolution and development (Evo-Devo) studies suggests that function is another mechanism important to healthy craniodental integration and fit. Starting as early as weaning, softer diets and thus lower bite forces appear to relax or disrupt integration of oral tissues, alter development and growth, and catalyze impaction, malocclusion, and jaw joint disorders. How developing oral tissues respond to bite forces remains poorly understood, but biomechanical feedback seems to alter balances of local bone resorption and deposition at the tooth-bone interface as well as affect tempos and amounts of facial outgrowth. Also, behavioral changes in jaw function and parafunction contribute to degeneration and pain in joint articular cartilages and masticatory muscles. The developmental genetic contribution to craniodental misfits and disorders is undeniable but still unclear; however, at present, human diet and jaw function remain important and much more actionable clinical targets. New Evo-Devo studies are needed to explain how function interfaces with craniodental phenotypic plasticity, variation, and evolvability to yield a spectrum of healthy and mismatched dentitions and jaws.


Subject(s)
Biological Evolution , Mandible/anatomy & histology , Morphogenesis/genetics , Skull/anatomy & histology , Temporomandibular Joint/anatomy & histology , Biomechanical Phenomena , Humans , Mandible/physiology , Skull/physiology
13.
Evol Dev ; 18(5-6): 317-323, 2016 12.
Article in English | MEDLINE | ID: mdl-27870215

ABSTRACT

Vertebrate jaws and dentitions fit and function together, yet the genetic processes that coordinate cranial and dental morphogenesis and evolution remain poorly understood. Teeth but not jaws fail to form in the edentate p63-/- mouse mutant, which we used here to identify genes important to odontogenesis, but not jaw morphogenesis, and that may allow dentitions to change during development and evolution without necessarily affecting the jaw skeleton. With the working hypothesis that tooth and jaw development are autonomously controlled by discreet gene regulatory networks, using gene expression microarray assays validated by quantitative reverse-transcription PCR we contrasted expression in mandibular prominences at embryonic days (E) 10-13 of mice with normal lower jaw development but either normal (p63+/- , p63+/+ ) or arrested (p63-/- ) tooth development. The p63-/- mice showed significantly different expression (fold change ≥2, ≤-2; P ≤ 0.05) of several genes. Some of these are known to help regulate odontogenesis (e.g., p63, Osr2, Cldn3/4) and/or to be targets of p63 (e.g., Jag1/2, Fgfr2); other genes have no previously reported roles in odontogenesis or the p63 pathway (e.g., Fermt1, Cbln1, Pltp, Krt8). As expected, from E10 to E13, few genes known to regulate mandible morphogenesis differed in expression between mouse strains. This study newly links several genes to odontogenesis and/or to the p63 signaling network. We propose that these genes act in a novel odontogenic network that is exclusive of lower jaw morphogenesis, and posit that this network evolved in oral, not pharyngeal, teeth.


Subject(s)
Biological Evolution , Gene Expression Regulation, Developmental , Gene Regulatory Networks , Jaw/embryology , Odontogenesis , Animals , Mice/embryology , Phosphoproteins/genetics , Phosphoproteins/metabolism , Trans-Activators/genetics , Trans-Activators/metabolism
14.
Acta Odontol Scand ; 74(7): 509-517, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27448555

ABSTRACT

OBJECTIVE: To test in the maxilla and mandible for an association between stage of third-molar (M3) mineralization and space in the jaws for M3 eruption. Mineralization is hypothesized to be delayed not only for impacted M3s but also for M3s with eruption space less than their mesiodistal crown diameter. MATERIAL AND METHODS: Retrospective cone beam computed tomography (CBCT) scans of 37 females and 32 males aged 17-24 years, for a total sample of 197 upper and lower M3s, were used to assess the status of M3 eruption and measure the M3 crown diameter (CD) relative to the length of the retromolar space (RS). Stage of M3 mineralization was then compared between impacted and erupting M3s as well as between two conditions of relative eruption space (RS/CD ≥ 1 versus RS/CD < 1) using Mann-Whitney U tests. RESULTS: Impacted M3s were at significantly earlier (delayed) stages of mineralization compared to erupting M3s. Mineralization was also delayed for M3s with eruption space less than their mesiodistal crown diameter (e.g. RS/CD < 1). A moderate positive correlation between stage of M3 mineralization and space was seen in both jaws, and was stronger in the mandible. CONCLUSION: Our study shows for the first time that stage of M3 mineralization is associated not only with impaction but also with amount of retromolar space, and that these associations are consistent in upper and lower jaws. Present findings underscore that M3 mineralization stage may be a clinically useful predictor of M3 impaction that thus merits further investigation.


Subject(s)
Dental Arch/anatomy & histology , Molar, Third/physiology , Tooth Calcification/physiology , Tooth Eruption/physiology , Adolescent , Cephalometry/methods , Cone-Beam Computed Tomography/methods , Dental Arch/diagnostic imaging , Female , Humans , Imaging, Three-Dimensional/methods , Male , Mandible/anatomy & histology , Mandible/diagnostic imaging , Maxilla/anatomy & histology , Maxilla/diagnostic imaging , Molar, Third/diagnostic imaging , Odontogenesis/physiology , Odontometry/methods , Retrospective Studies , Tooth Crown/anatomy & histology , Tooth Crown/diagnostic imaging , Tooth, Impacted/diagnostic imaging , Tooth, Impacted/pathology , Young Adult
15.
Ecol Evol ; 6(8): 2318-24, 2016 Apr.
Article in English | MEDLINE | ID: mdl-27069580

ABSTRACT

Morphological variation is unevenly distributed within the mammalian skull; some of its parts have diversified more than others. It is commonly thought that this pattern of variation is mainly the result of the structural organization of the skull, as defined by the pattern and magnitude of trait covariation. Patterns of trait covariation can facilitate morphological diversification if they are aligned in the direction of selection, or these patterns can constrain diversification if oriented in a different direction. Within this theoretical framework, it is thought that more variable parts possess patterns of trait covariation that made them more capable of evolutionary change, that is, are more labile. However, differences in the degree of morphological variation among skull traits could arise despite variation in trait lability if, for example, some traits have evolved at a different rate and/or undergone stabilizing selection. Here, we test these hypotheses in the mammalian skull using 2D geometric morphometrics to quantify skull shape and estimating constraint, rates of evolution, and lability. Contrary to the expectations, more variable parts of the skull across mammalian species are less capable of evolutionary change than are less variable skull parts. Our results suggest that patterns of morphological variation in the skull could result from differences in rate of evolution and stabilizing selection.

16.
Development ; 142(20): 3583-91, 2015 Oct 15.
Article in English | MEDLINE | ID: mdl-26487781

ABSTRACT

After more than a century of research, the mouse remains the gold-standard model system, for it recapitulates human development and disease and is quickly and highly tractable to genetic manipulations. Fundamental to the power and success of using a mouse model is the ability to stage embryonic mouse development accurately. Past staging systems were limited by the technologies of the day, such that only surface features, visible with a light microscope, could be recognized and used to define stages. With the advent of high-throughput 3D imaging tools that capture embryo morphology in microscopic detail, we now present the first 4D atlas staging system for mouse embryonic development using optical projection tomography and image registration methods. By tracking 3D trajectories of every anatomical point in the mouse embryo from E11.5 to E14.0, we established the first 4D atlas compiled from ex vivo 3D mouse embryo reference images. The resulting 4D atlas comprises 51 interpolated 3D images in this gestational range, resulting in a temporal resolution of 72 min. From this 4D atlas, any mouse embryo image can be subsequently compared and staged at the global, voxel and/or structural level. Assigning an embryonic stage to each point in anatomy allows for unprecedented quantitative analysis of developmental asynchrony among different anatomical structures in the same mouse embryo. This comprehensive developmental data set offers developmental biologists a new, powerful staging system that can identify and compare differences in developmental timing in wild-type embryos and shows promise for localizing deviations in mutant development.


Subject(s)
Embryo, Mammalian/anatomy & histology , Gene Expression Regulation, Developmental , Animals , Automation , Embryonic Development , Image Processing, Computer-Assisted , Imaging, Three-Dimensional/methods , Mice , Phenotype , Software , Time Factors , Tomography, Optical/methods
17.
PLoS One ; 10(10): e0140030, 2015.
Article in English | MEDLINE | ID: mdl-26452269

ABSTRACT

How do the various anatomical parts (modules) of the animal body evolve into very different integrated forms (integration) yet still function properly without decreasing the individual's survival? This long-standing question remains unanswered for multiple reasons, including lack of consensus about conceptual definitions and approaches, as well as a reasonable bias toward the study of hard tissues over soft tissues. A major difficulty concerns the non-trivial technical hurdles of addressing this problem, specifically the lack of quantitative tools to quantify and compare variation across multiple disparate anatomical parts and tissue types. In this paper we apply for the first time a powerful new quantitative tool, Anatomical Network Analysis (AnNA), to examine and compare in detail the musculoskeletal modularity and integration of normal and abnormal human upper and lower limbs. In contrast to other morphological methods, the strength of AnNA is that it allows efficient and direct empirical comparisons among body parts with even vastly different architectures (e.g. upper and lower limbs) and diverse or complex tissue composition (e.g. bones, cartilages and muscles), by quantifying the spatial organization of these parts-their topological patterns relative to each other-using tools borrowed from network theory. Our results reveal similarities between the skeletal networks of the normal newborn/adult upper limb vs. lower limb, with exception to the shoulder vs. pelvis. However, when muscles are included, the overall musculoskeletal network organization of the upper limb is strikingly different from that of the lower limb, particularly that of the more proximal structures of each limb. Importantly, the obtained data provide further evidence to be added to the vast amount of paleontological, gross anatomical, developmental, molecular and embryological data recently obtained that contradicts the long-standing dogma that the upper and lower limbs are serial homologues. In addition, the AnNA of the limbs of a trisomy 18 human fetus strongly supports Pere Alberch's ill-named "logic of monsters" hypothesis, and contradicts the commonly accepted idea that birth defects often lead to lower integration (i.e. more parcellation) of anatomical structures.


Subject(s)
Biological Evolution , Lower Extremity/anatomy & histology , Muscle, Skeletal/anatomy & histology , Upper Extremity/anatomy & histology , Animals , Bone and Bones/anatomy & histology , Bone and Bones/pathology , Cartilage/anatomy & histology , Cartilage/growth & development , Cartilage/pathology , Humans , Lower Extremity/growth & development , Lower Extremity/pathology , Muscle, Skeletal/growth & development , Muscle, Skeletal/pathology , Toes/anatomy & histology , Toes/growth & development , Toes/pathology , Upper Extremity/growth & development , Upper Extremity/pathology
18.
Am J Phys Anthropol ; 158(3): 452-62, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26184494

ABSTRACT

OBJECTIVES: Understanding variation in dental development among primates is important to accurately characterize species-specific sequences and times of tooth formation. Conventional approaches that summarize dental development data (i.e., dental maturity score, DMS) inherently omit information about the full range of variation in raw scores; thus, classic bivariate analyses are limited for exploring patterns of variation in detail. Here we report a new multivariate approach to simultaneously assess all raw dental scores, for all teeth, among all individuals for all groups, thus retaining much greater detail about population-specific patterns of variation. METHODS: We scored (0-12) permanent tooth mineralization using radiographs of mandibles of captive-raised known-age chimpanzees (Pan troglodytes; n = 114) and free-lived age-unknown conspecifics (n = 54). As a test of our method we also scored free-lived baboons (Papio anubis, n = 50) because of well-described contrasting patterns of permanent molar initiation between Papio and Pan. Using principal component analysis (PCA), we investigated how crypt, crown and root formation scores covaried with each other in all three genera, and with chronological age in captive chimpanzees. RESULTS: PCA successfully captured additional detail about variation among raw scores. Also, compared to DMS, PC1 scores correlated equivalently well with known ages but had lower prediction error. CONCLUSIONS: We found different patterns of variation in scores between younger juvenile free and captive chimpanzees but saw no wholesale differences between groups. Pan and Papio showed different patterns of variation, further validating this multivariate approach to visualize, quantify and compare raw dental score datasets among primate species.


Subject(s)
Pan troglodytes/physiology , Tooth Calcification/physiology , Tooth/anatomy & histology , Animals , Animals, Wild , Animals, Zoo , Anthropology, Physical , Multivariate Analysis , Principal Component Analysis
19.
PLoS One ; 10(5): e0127653, 2015.
Article in English | MEDLINE | ID: mdl-25992690

ABSTRACT

Modularity and complexity go hand in hand in the evolution of the skull of primates. Because analyses of these two parameters often use different approaches, we do not know yet how modularity evolves within, or as a consequence of, an also-evolving complex organization. Here we use a novel network theory-based approach (Anatomical Network Analysis) to assess how the organization of skull bones constrains the co-evolution of modularity and complexity among primates. We used the pattern of bone contacts modeled as networks to identify connectivity modules and quantify morphological complexity. We analyzed whether modularity and complexity evolved coordinately in the skull of primates. Specifically, we tested Herbert Simon's general theory of near-decomposability, which states that modularity promotes the evolution of complexity. We found that the skulls of extant primates divide into one conserved cranial module and up to three labile facial modules, whose composition varies among primates. Despite changes in modularity, statistical analyses reject a positive feedback between modularity and complexity. Our results suggest a decoupling of complexity and modularity that translates to varying levels of constraint on the morphological evolvability of the primate skull. This study has methodological and conceptual implications for grasping the constraints that underlie the developmental and functional integration of the skull of humans and other primates.


Subject(s)
Biological Evolution , Primates/anatomy & histology , Skull/anatomy & histology , Animals , Phylogeny , Primates/classification
20.
Sci Rep ; 5: 8298, 2015 Feb 06.
Article in English | MEDLINE | ID: mdl-25656958

ABSTRACT

Mosaic evolution is a key mechanism that promotes robustness and evolvability in living beings. For the human head, to have a modular organization would imply that each phenotypic module could grow and function semi-independently. Delimiting the boundaries of head modules, and even assessing their existence, is essential to understand human evolution. Here we provide the first study of the human head using anatomical network analysis (AnNA), offering the most complete overview of the modularity of the head to date. Our analysis integrates the many biological dependences that tie hard and soft tissues together, arising as a consequence of development, growth, stresses and loads, and motion. We created an anatomical network model of the human head, where nodes represent anatomical units and links represent their physical articulations. The analysis of the human head network uncovers the presence of 10 musculoskeletal modules, deep-rooted in these biological dependences, of developmental and evolutionary significance. In sum, this study uncovers new anatomical and functional modules of the human head using a novel quantitative method that enables a more comprehensive understanding of the evolutionary anatomy of our lineage, including the evolution of facial expression and facial asymmetry.


Subject(s)
Biological Evolution , Head/anatomy & histology , Models, Anatomic , Musculoskeletal System/anatomy & histology , Humans , Phenotype
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