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1.
Eur J Cancer Prev ; 26(1): 10-16, 2017 01.
Article in English | MEDLINE | ID: mdl-26938501

ABSTRACT

The emergence of antibiotic-resistant Helicobacter pylori strains impacts the efficacy of eradication therapy and promotes the development of alternative treatment strategies. Apocynin inhibits neutrophil NADPH oxidase and hence may decrease reactive oxygen species-mediated tissue damage in H. pylori-infected stomach tissue. Apocynin was tested in vitro for its cytotoxic and direct antibacterial effects. The therapeutic efficacy of orally administered apocynin (100 mg/kg/day through drinking water or 200 mg/kg/day through combined administration of drinking water and slow-release formulation) was assessed at 9 weeks after infection in the Mongolian gerbil model. Bacterial burdens were quantified by viable plate count and quantitative PCR. Histopathological evaluation of antrum and pylorus provided insight into mucosal inflammation and injury. Apocynin showed no cytotoxic or direct antibacterial effects in vitro or in vivo. Nine weeks of apocynin treatment at 200 mg/kg/day reduced active H. pylori gastritis as neutrophil infiltration in the mucous neck region and pit abscess formation decreased significantly. In our gerbil model, prolonged high-dose apocynin treatment significantly improved H. pylori-induced pit abscess formation without indications of drug toxicity and thus further investigation of the dosage regimen and formulation and the long-term impact on neoplastic development should be carried out.


Subject(s)
Acetophenones/therapeutic use , Carcinogenesis/drug effects , Helicobacter Infections/drug therapy , Helicobacter pylori/drug effects , Stomach Neoplasms/drug therapy , Acetophenones/pharmacology , Animals , Anti-Inflammatory Agents, Non-Steroidal/pharmacology , Anti-Inflammatory Agents, Non-Steroidal/therapeutic use , Carcinogenesis/pathology , Cell Line , Cell Survival/drug effects , Cell Survival/physiology , Drug Evaluation, Preclinical/methods , Female , Gerbillinae , Helicobacter Infections/complications , Helicobacter Infections/pathology , Stomach Neoplasms/etiology , Stomach Neoplasms/pathology
2.
Folia Microbiol (Praha) ; 60(4): 335-42, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25948317

ABSTRACT

Since biofilms are important in many clinical, industrial, and environmental settings, reliable methods to quantify these sessile microbial populations are crucial. Most of the currently available techniques do not allow the enumeration of the viable cell fraction within the biofilm and are often time consuming. This paper proposes flow cytometry (FCM) using the single-stain viability dye TO-PRO(®)-3 iodide as a fast and precise alternative. Mature biofilms of Candida albicans and Escherichia coli were used to optimize biofilm removal and dissociation, as a single-cell suspension is needed for accurate FCM enumeration. To assess the feasibility of FCM quantification of biofilms, E. coli and C. albicans biofilms were analyzed using FCM and crystal violet staining at different time points. A combination of scraping and rinsing proved to be the most efficient technique for biofilm removal. Sonicating for 10 min eliminated the remaining aggregates, resulting in a single-cell suspension. Repeated FCM measurements of biofilm samples revealed a good intraday precision of approximately 5 %. FCM quantification and the crystal violet assay yielded similar biofilm growth curves for both microorganisms, confirming the applicability of our technique. These results show that FCM using TO-PRO(®)-3 iodide as a single-stain viability dye is a valid fast alternative for the quantification of viable cells in a biofilm.


Subject(s)
Biofilms/growth & development , Flow Cytometry/methods , Microbial Viability , Microbiological Techniques/methods , Candida/physiology , Carbocyanines/metabolism , Escherichia coli/physiology , Staining and Labeling/methods
3.
J Microbiol Methods ; 112: 73-5, 2015 May.
Article in English | MEDLINE | ID: mdl-25772040

ABSTRACT

A novel in vitro onychomycosis model was developed to easily predict the topical activity potential of novel antifungal drugs. The model encompasses drug activity and diffusion through bovine hoof slices in a single experimental set-up. Results correspond well with the antifungal susceptibility assay and Franz cell diffusion test.


Subject(s)
Anti-Infective Agents, Local/pharmacology , Antifungal Agents/pharmacology , Drug Evaluation, Preclinical/methods , Onychomycosis/drug therapy , Animals , Anti-Infective Agents, Local/pharmacokinetics , Antifungal Agents/pharmacokinetics , Cattle , Hoof and Claw/drug effects , Hoof and Claw/microbiology , Models, Theoretical
4.
Eur J Cardiothorac Surg ; 48(4): 622-9, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25564212

ABSTRACT

OBJECTIVES: Pulmonary ischaemia-reperfusion injury (IRI) is associated with several life-threatening pulmonary disorders, and may severely compromise the outcome of lung transplantation. Highly reactive molecules such as superoxide, nitric oxide (NO) and peroxynitrite (ONOO(-)) are presumed to contribute to IRI pathogenesis, but this assumption is based on indirect measurements. We use electron spin resonance (ESR) to directly quantify free radical formation after pulmonary ischaemia and reperfusion. METHODS: Five groups of 10 Swiss mice were subjected to left pulmonary hilum clamping for 1 h of ischaemia followed by 0, 1, 4 and 24 h of reperfusion or to sham thoracotomy alone as control procedure. In five mice per group, ESR was used to measure iron-diethyldithio-carbamate trihydrate-trapped NO in the lung. In the other group of 5, reactive oxygen species generation in the lung and in blood was quantified with ESR by detection of ascorbyl radical and CMH spin probe, respectively. Pulmonary ONOO(-) was monitored with nitrotyrosine Western blotting. RESULTS: After 1 h of reperfusion, a pulmonary NO peak (14.69 ± 0.91 × 10(4) Arbitrary Units (A.U.). vs 1.84 ± 0.75 × 10(4) A.U. in sham; P < 0.001) coincided with a significant increase in nitrosated proteins (0.105 ± 0.015 A.U.) compared with sham (0.047 ± 0.006 A.U.); P < 0.005). Peripheral blood showed a significant free radical burst after 1 h of ischaemia (11 774 ± 728 A.U. vs 6660 ± 833 A.U. in sham; P < 0.001). CONCLUSIONS: Longitudinal quantification of free radicals during IRI reveals the occurrence of two major radical bursts. The radical peak in peripheral blood after ischaemia may be related to systemic hypoxia. After 1 h of reperfusion, the lung tissue shows a significant increase of superoxide, NO and their reaction products, which are probably involved in IRI pathogenesis.


Subject(s)
Free Radicals/metabolism , Lung/blood supply , Reperfusion Injury/metabolism , Reperfusion Injury/physiopathology , Animals , Disease Models, Animal , Electron Spin Resonance Spectroscopy/methods , Evaluation Studies as Topic , Female , Lung Transplantation/adverse effects , Mice , Nitric Oxide/metabolism , Oxidative Stress/physiology , Random Allocation , Reactive Oxygen Species/metabolism , Sensitivity and Specificity , Superoxide Dismutase/metabolism
5.
Mycoses ; 58(3): 127-32, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25590577

ABSTRACT

Invasive aspergillosis (IA) has become increasingly common and is characterised by high morbidity and mortality. Upcoming resistance threatens treatment with azoles and highlights the continuous need for novel therapeutics. This laboratory study investigated the in vitro and in vivo potential of the alkylphospholipid oleylphosphocholine (OlPC) against Aspergillus. In vitro activities of OlPC, miltefosine, posaconazole and voriconazole were determined for Aspergillus fumigatus, A. niger, A. terreus and A. flavus. In vivo efficacy of OlPC was evaluated in a systemic A. fumigatus mouse model, adopting a short-term and long-term oral or intraperitoneal dosing regimen. OlPC showed good in vitro activity against A. fumigatus (IC50 = 1.04 µmol l(-1)). Intraperitoneal administration of 50 mg kg(-1) day(-1) OlPC significantly reduced the fungal organ burdens at 4 days post-infection (dpi). Although 5- and 10-day OlPC treatment improved survival, organ burdens were not affected at 10 and 15 dpi. While this study showed excellent in vitro activity of OlPC against Aspergillus spp., its therapeutic efficacy in an acute mouse model for IA was less convincing. Given the limited therapeutic options in the current antifungal market for invasive infections, OlPC activity should be assessed in a less stringent in vivo model, potentially in combination treatment with other already marketed antifungal drugs.


Subject(s)
Antifungal Agents/pharmacology , Antifungal Agents/therapeutic use , Aspergillosis/drug therapy , Aspergillus/drug effects , Phosphorylcholine , Pyrimidines/therapeutic use , Animals , Aspergillosis/microbiology , Aspergillus fumigatus/drug effects , Azoles/therapeutic use , Disease Models, Animal , Mice , Microbial Sensitivity Tests , Phosphorylcholine/analogs & derivatives , Phosphorylcholine/pharmacology , Phosphorylcholine/therapeutic use , Triazoles/pharmacology , Voriconazole/pharmacology
6.
J Surg Res ; 194(2): 659-666, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25588947

ABSTRACT

BACKGROUND: Pulmonary ischemia-reperfusion injury (IRI) causes postoperative morbidity in patients undergoing lung transplantation, isolated lung perfusion, and cardiopulmonary bypass and may lead to potentially lethal pathologies such as respiratory shock. In-depth study of this pathology requires a reliable animal model. Mice are a popular species to develop experimental models because of their logistic advantages and the availability of knock outs. However, their small size warrants microsurgical techniques and a skilled surgeon. MATERIALS AND METHODS: We developed a murine model of pulmonary anoxic IRI through hilar clamping using adult female Swiss mice. After left thoracotomy, we expose the pulmonary hilum keeping the ribs and the muscles of back and forepaw intact. A microvascular clamp is placed over the entire hilum, occluding bronchus, pulmonary artery, and vein. RESULTS: Our model proved to be simple, reliable, and reproducible, showing minimal preoperative and postoperative mortality. Histopathologic analysis indicated all characteristic features of pulmonary IRI, such as an early recruitment of lymphocytes followed by neutrophil influx. CONCLUSIONS: This article presents a murine surgery model for pulmonary IRI based on a muscle-sparing thoracotomy. The minimal approach limits manipulation of lung tissue, minimizing mortality and non-IRI-induced injury.


Subject(s)
Acute Lung Injury/etiology , Disease Models, Animal , Reperfusion Injury/etiology , Animals , Female , Mice, Inbred BALB C , Mice, Inbred C57BL , Microsurgery/methods
7.
Methods Mol Biol ; 1249: 27-35, 2015.
Article in English | MEDLINE | ID: mdl-25348295

ABSTRACT

A highly sensitive SPF10 real-time PCR was developed to achieve simultaneous amplification and detection of the human papillomavirus (HPV) target. That way, LiPA analysis of the HPV-negative samples can be avoided, reducing workload and cost. Here, we describe in detail a SYBR Green I-based real-time PCR assay based on SPF10 primers using the LightCycler(®) 480 system to generate and detect HPV amplicons, which are compatible with the LiPA assay.


Subject(s)
DNA Primers/metabolism , Genotyping Techniques/methods , Molecular Typing/methods , Papillomaviridae/classification , Papillomaviridae/genetics , Real-Time Polymerase Chain Reaction/methods , Genotype , Humans , Nucleic Acid Denaturation/genetics , Papillomaviridae/isolation & purification
8.
J Lab Autom ; 19(6): 555-61, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25124156

ABSTRACT

Quantification of bacteria using conventional viable plate counting (VPC) is labor-intensive and time-consuming. Flow cytometry (FCM) can be proposed as a faster alternative. This study aimed to develop a flow cytometric, single-stain approach using TO-PRO®-3 iodide (TP3) for the quantification of Staphylococcus aureus, Escherichia coli, and Bacillus subtilis cells. Live or dead bacterial suspensions were stained with TP3 and analyzed using a FACSCalibur flow cytometer. After optimization of staining parameters and instrument settings, an excellent separation of viable and dead cells was achieved for all species. The quantitative performance of the technique was assessed by analyzing serial dilutions of bacterial suspensions using FCM and VPC. A highly linear correlation (r2 > 0.99) was observed between the colony forming units (CFU)/mL as determined by FCM and by VPC over a concentration range of about 104 to 108 CFU/mL. As such, FCM quantification of viable bacteria using TP3 can be considered as an accurate and reliable alternative for VPC. The monostain procedure is easy to apply and cost-effective, and it allows bacterial enumeration in a broad variety of samples.


Subject(s)
Bacterial Load/methods , Carbocyanines/metabolism , Flow Cytometry/methods , Microbial Viability , Staining and Labeling/methods , Bacillus subtilis/isolation & purification , Colony Count, Microbial , Cost-Benefit Analysis , Escherichia coli/isolation & purification , Iodides/metabolism , Staphylococcus aureus/isolation & purification
9.
Drug Discov Today ; 19(9): 1380-6, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24931219

ABSTRACT

Although Aspergillus infections pose a growing threat to immunocompromised individuals, the limited range of existing drugs does not allow efficient management of invasive aspergillosis. Moreover, drug resistance is becoming increasingly common. Given that drug discovery relies on high-quality animal studies, careful design of in vivo models for invasive aspergillosis could facilitate the identification of novel antifungals. In this review, we discuss key aspects of animal models for invasive aspergillosis, covering laboratory animal species, immune modulation, inoculation routes, Aspergillus strains, treatment strategies and efficacy assessment, to enable the reader to tailor specific protocols for different types of preclinical antifungal evaluation study.


Subject(s)
Antifungal Agents/pharmacology , Aspergillosis/drug therapy , Disease Models, Animal , Animals , Aspergillosis/microbiology , Aspergillus/drug effects , Aspergillus/isolation & purification , Drug Design , Drug Evaluation, Preclinical/methods , Drug Resistance, Fungal , Humans
10.
J Antimicrob Chemother ; 69(6): 1608-10, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24535279

ABSTRACT

BACKGROUND: Pyrrolo[1,2-α][1,4]benzodiazepines (PBDs) have been described as a novel class of antifungal compounds with activity against dermatophytes and Aspergillus fumigatus. The initial structure-activity relationship showed that compounds with a chlorine substitution at position 7 have a higher activity compared with regioisomers or other substituents. METHODS: The present study evaluated more analogues with a 7-chlorine-substitution in vitro against a broad panel of clinically relevant fungal species. The Microsporum canis model in guinea pigs was used to assess the in vivo efficacy after oral and topical administration. RESULTS: IC50 values in the low micromolar range (IC50 0.6-8.0 µM for dihydro-PBDs; 0.1-0.7 µM for oxidized PBDs) confirmed the potent and selective in vitro activity of PBDs against dermatophytes, while the activity against A. fumigatus and Candida parapsilosis was slightly lower. For dihydro-PBDs, para-substitution showed superior activity, while oxidized compounds with a meta-substitution performed best. Oxidized Compound O with meta-CF2CH3-substitution showed excellent IC50 values of 0.6 µM against M. canis, 2.0 µM against Trichophyton mentagrophytes and 0.7 µM against Trichophyton rubrum, matching or outperforming the activity of itraconazole (IC50 values of 2.0, 0.4 and 0.6 µM, respectively). In vivo, topical application of a 0.25% formulation of Compound O gave a lesion reduction of >90% compared with placebo-treated animals. Oral administration of this compound at 20 mg/kg showed superior therapeutic efficacy compared with the reference drug itraconazole. CONCLUSIONS: In conclusion, PBDs with a chlorine atom at position 7 are very promising antifungal candidates with convincing in vitro and in vivo activity particularly against dermatophytes and should be studied in greater detail to explore their full potential in the treatment of dermatophytoses.


Subject(s)
Antifungal Agents/pharmacology , Azepines/pharmacology , Dermatomycoses/microbiology , Microsporum/drug effects , Pyrroles/pharmacology , Administration, Oral , Administration, Topical , Animals , Antifungal Agents/administration & dosage , Antifungal Agents/pharmacokinetics , Azepines/administration & dosage , Azepines/pharmacokinetics , Cell Line , Dermatomycoses/drug therapy , Disease Models, Animal , Guinea Pigs , Humans , Inhibitory Concentration 50 , Microbial Sensitivity Tests , Pyrroles/administration & dosage , Pyrroles/pharmacokinetics
11.
Pathog Dis ; 70(3): 408-13, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24532232

ABSTRACT

The ability of Porphyromonas gingivalis to cause adult periodontitis is determined by its arsenal of virulence factors. Here, we investigated the importance of biofilm formation and bacterial dipeptidyl peptidase IV (DPPIV) for the pathogenicity of clinical P. gingivalis isolates. In our study, the isolates with biofilm-forming capacity also showed high DPPIV activity in vitro. Moreover, DPPIV activity increased in P. gingivalis biofilms compared to planktonic cells. In a murine subcutaneous abscess model, the biofilm-forming isolates with high DPPIV activity proved to be pathogenic, while the nonbiofilm formers with low DPPIV activity did not induce abscesses. The biofilm-forming ATCC 33277 strain with low DPPIV activity was not pathogenic in mice either. Our results suggest that biofilm formation and DPPIV activity contribute to the pathogenic potential of P. gingivalis. Furthermore, we show that biofilm formation may enhance P. gingivalis virulence through an increased DPPIV activity. Because of their importance for bacterial colonization and growth, biofilm formation and DPPIV activity could present interesting therapeutic targets to tackle periodontitis.


Subject(s)
Biofilms/growth & development , Dipeptidyl Peptidase 4/biosynthesis , Porphyromonas gingivalis/physiology , Abscess/microbiology , Animals , Disease Models, Animal , Enzyme Activation , Female , Humans , Mice , Periodontitis/microbiology , Porphyromonas gingivalis/pathogenicity , Virulence
12.
J Med Virol ; 86(2): 257-65, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24155172

ABSTRACT

This study reports the detection of HPV types from cancerous and pre-cancerous penile lesions that were diagnosed histologically. Sixty-six (22 pre-cancerous and 44 cancerous lesions) tissue biopsies, received between 2004 and 2011 by the Anatomical Pathology Department at Dr. George Mukhari Hospital were selected for this study. Total DNA was extracted and genotyped using type specific real-time quantitative polymerase chain reaction (qPCR) for 18 HPV types. Of 66 samples, only 51 were included in the analysis. Overall, HPV 11 (50.9%) and HPV 16 (49.1%) showed almost similar incidence in the study patients. In pre-cancerous lesions, HPV 11 was more frequent (80.0%), followed by HPV 31 and HPV 16 at 25.0% each and other HPV types included 35 (15.0%), 59 (15.0%), 53 (10.0%), 33 (10.0%), 18 (5.0%), 51 (5.0%), 52 (5.0%), 56 (5.0%), and 67 (5.0%). For cancerous lesions, HPV 16 was the most detected (62.9%), followed by HPV 11 (34.3%), and other HPV types included 18 (11.4%), 33 (5.7%), 39 (5.7%), 45 (5.7%), 66 (5.7%), 52 (2.9%), 58 (2.9%), 6 (2.9%), and 67 (2.9%). Several lesions demonstrated multiple HPV infections, ranging from two to six different types in one lesion. The study showed high diversity of HPV types in cancerous and pre-cancerous lesions of South African males with the most frequent being HPV types 11 and 16. The data suggest that boys could directly benefit from vaccination as they are exposed to variety of HPV types as early as 10 years of age in Africa.


Subject(s)
Condylomata Acuminata/virology , Papillomaviridae/classification , Papillomaviridae/isolation & purification , Papillomavirus Infections/virology , Penile Neoplasms/virology , Adolescent , Adult , Aged , Aged, 80 and over , Biopsy , Condylomata Acuminata/epidemiology , Genotype , Histocytochemistry , Humans , Incidence , Male , Middle Aged , Papillomaviridae/genetics , Papillomavirus Infections/epidemiology , Penile Neoplasms/epidemiology , Real-Time Polymerase Chain Reaction , Retrospective Studies , South Africa/epidemiology , Young Adult
13.
PLoS One ; 8(2): e57016, 2013.
Article in English | MEDLINE | ID: mdl-23457647

ABSTRACT

Cisplatin-induced hypomagnesemia is described in humans and rats, but the underlying mechanisms are still unclear. Recent studies have shown that epidermal growth factor (EGF) stimulates Mg(2+) re-absorption in the distal convoluted tubule via the Mg(2+) channel TRPM6. This study investigates the role of TRPM Mg(2+) channels, claudines, and EGF in the Mg(2+) homeostasis in a rat model of cisplatin-induced nephrotoxicity. Wistar rats were given 2.5 mg/kg cisplatin per week for 3 weeks and were euthanized 4 or 9 weeks after the first administration. The cisplatin treatment significantly increased the fractional excretion of Mg(2+). Real-time RT-PCR and/or Western blots were performed to assess the renal expression TRPM6, TRPM7, claudin-16, claudin-19, EGF, EGF receptor (EGFR) and EGFR-pathway components. The renal mRNA expression of TRPM6 and EGF showed a significant decrease after cisplatin treatment, while the TRPM7, claudin-16 and EGFR expressions remained stable. The claudin-19 mRNA expression was significantly upregulated after cisplatin treatment. Western blotting confirmed the mRNA expression data for the claudins, but an showed upregulation of EGFR only at week 9. The role of the EGFR pathway, involving Pi3-AKT-Rac1, in cisplatin-induced nephropathy, could not be substantiated in further detail. This study shows that cisplatin treatment results in EGF and TRPM6 downregulation in the rat kidney, causing renal Mg(2+) loss. Our results are in line with the hypothesis that EGF influences the renal expression or activation of TRPM6 and plays a significant role in Mg(2+) loss in medication-induced nephropathy.


Subject(s)
Cisplatin/adverse effects , Down-Regulation/drug effects , Epidermal Growth Factor/metabolism , Kidney/drug effects , Kidney/metabolism , Signal Transduction/drug effects , TRPM Cation Channels/metabolism , Absorption/drug effects , Animals , Claudins/genetics , Claudins/metabolism , ErbB Receptors/metabolism , Kidney/cytology , Magnesium/metabolism , Male , Rats , Rats, Wistar , TRPM Cation Channels/genetics
14.
J Biomol Screen ; 18(1): 135-42, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22972847

ABSTRACT

A shift from conventional cytology to a molecular approach could improve cervical cancer screening. This proof-of-concept study aims to develop a high-content imaging platform for the simultaneous detection of multiple biomarkers for cervical disease. Liquid-based cytology (LBC) samples were used to optimize a dual ProExC/Ki-67 immunofluorescence staining protocol for SurePath-fixed cells. The simultaneous and automated detection of these biomarkers was performed using the BD Pathway 435 system. The ability of high-content imaging to detect dysplastic cervical cells was assessed using keratinocytes spiked with immunopositive SiHa cells and a high-grade squamous intraepithelial lesion (HSIL) LBC sample. The percentages of Ki-67- and ProExC-immunopositive objects correlated significantly with the percentages of spiked SiHa cells. The dysplastic cells of the HSIL sample could be detected using high-content cell analysis. In conclusion, high-content imaging allows the simultaneous and automated detection of Ki-67- and ProExC-immunopositive dysplastic cells in LBC specimens.


Subject(s)
Early Detection of Cancer/methods , Uterine Cervical Dysplasia/diagnosis , Uterine Cervical Neoplasms/diagnosis , Antigens, Neoplasm/metabolism , Biomarkers, Tumor/metabolism , Cell Cycle Proteins/metabolism , Cell Line, Tumor , DNA Topoisomerases, Type II/metabolism , DNA-Binding Proteins/metabolism , Diagnostic Imaging/methods , Female , Fluorescent Antibody Technique, Indirect , High-Throughput Screening Assays , Humans , Keratinocytes/metabolism , Ki-67 Antigen/metabolism , Minichromosome Maintenance Complex Component 2 , Nuclear Proteins/metabolism , Reference Standards , Staining and Labeling
15.
J Microbiol Methods ; 92(2): 189-91, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23266389

ABSTRACT

This study investigated a flow cytometric, single-stain approach to quantify Candida albicans as an alternative for the standard viable plate count. TO-PRO(®)-3 iodide allows an excellent distinction between viable and dead cells. Both quantification methods show a high degree of correlation.


Subject(s)
Candida albicans/isolation & purification , Carbocyanines/metabolism , Colony Count, Microbial/methods , Flow Cytometry/methods , Staining and Labeling/methods , Microbial Viability
16.
PLoS One ; 6(8): e23793, 2011.
Article in English | MEDLINE | ID: mdl-21858224

ABSTRACT

BACKGROUND: Quantitative real-time PCR (qPCR) is a widely used technique for gene expression analysis. Its reliability is highly dependent upon selection of the appropriate reference genes for accurate gene expression normalization. In this study, we investigated the expression stability of 10 commonly used reference genes in a mouse myocardial infarction model. METHODS & RESULTS: The expression stability of the 10 reference genes (Actb, B2m, Eef1a1, Gapdh, Hprt, Polr2a, Ppia, Rpl13a, Tbp, Tpt1) was analyzed using the geNorm software. Overall, the combination of Hprt, Rpl13a and Tpt1 was the most stable reference gene set in our experiments. Gapdh, Polr2a and Actb consistently showed the highest gene expression variability and the expression levels of Gapdh, Polr2a, Actb, B2m and Eef1a1 were found to be selectively up- or downregulated after myocardial infarction. We normalized the expression of Nppb and Vcam1, using different reference gene strategies and demonstrated that their induction after myocardial infarction was most clearly revealed with the optimal reference gene combination. However, the use of suboptimal reference gene combinations resulted in detrimental effects on gene expression levels and variability with a gradual loss of the expression differences and a significant reduction in statistical power. CONCLUSIONS: Hprt, Rpl13a and Tpt1 are a set of stably expressed reference genes for accurate gene expression normalization in myocardial infarction studies in mice. We found that Gapdh, Polr2a and Actb display high expression variability in mouse myocardial infarction tissues and that loss of statistical power and increase in sample size are the evident consequences of choosing suboptimal combinations of reference genes. We furthermore caution against the use of Gapdh, Polr2a, Actb, B2m and Eef1a1 for gene expression normalization in myocardial infarction studies because of selective up- or downregulation after myocardial infarction, which could potentially lead to biased study outcomes.


Subject(s)
Gene Expression Profiling/standards , Myocardial Infarction/genetics , Reverse Transcriptase Polymerase Chain Reaction/standards , Animals , Biomarkers, Tumor/genetics , Hypoxanthine Phosphoribosyltransferase/genetics , Male , Mice , Mice, Inbred C57BL , Reference Standards , Reproducibility of Results , Ribosomal Proteins/genetics , Software , Tumor Protein, Translationally-Controlled 1
17.
Am J Physiol Renal Physiol ; 301(3): F486-93, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21653632

ABSTRACT

Renal magnesium (Mg(2+)) and sodium (Na(+)) loss are well-known side effects of cyclosporine (CsA) treatment in humans, but the underlying mechanisms still remain unclear. Recently, it was shown that epidermal growth factor (EGF) stimulates Mg(2+) reabsorption in the distal convoluted tubule (DCT) via TRPM6 (Thébault S, Alexander RT, Tiel Groenestege WM, Hoenderop JG, Bindels RJ. J Am Soc Nephrol 20: 78-85, 2009). In the DCT, the final adjustment of renal sodium excretion is regulated by the thiazide-sensitive Na(+)-Cl(-) cotransporter (NCC), which is activated by the renin-angiotensin-aldosterone system (RAAS). The aim of this study was to gain more insight into the molecular mechanisms of CsA-induced hypomagnesemia and hyponatremia. Therefore, the renal expression of TRPM6, TRPM7, EGF, EGF receptor, claudin-16, claudin-19, and the NCC, and the effect of the RAAS on NCC expression, were analyzed in vivo in a rat model of CsA nephrotoxicity. Also, the effect of EGF administration on these parameters was studied. CsA significantly decreased the renal expression of TRPM6, TRPM7, NCC, and EGF, but not that of claudin-16 and claudin-19. Serum aldosterone was significantly lower in CsA-treated rats. In control rats treated with EGF, an increased renal expression of TRPM6 together with a decreased fractional excretion of Mg(2+) (FE Mg(2+)) was demonstrated. EGF did not show this beneficial effect on TRPM6 and FE Mg(2+) in CsA-treated rats. These data suggest that CsA treatment affects Mg(2+) homeostasis via the downregulation of TRPM6 in the DCT. Furthermore, CsA downregulates the NCC in the DCT, associated with an inactivation of the RAAS, resulting in renal sodium loss.


Subject(s)
Cyclosporine/adverse effects , Enzyme Inhibitors/adverse effects , Epidermal Growth Factor/therapeutic use , Kidney Tubules, Distal/metabolism , Kidney Tubules, Distal/pathology , Sodium Chloride Symporters/metabolism , TRPM Cation Channels/metabolism , Animals , Claudins/metabolism , Cyclosporine/pharmacology , Enzyme Inhibitors/pharmacology , Epidermal Growth Factor/metabolism , Epidermal Growth Factor/pharmacology , ErbB Receptors/metabolism , Homeostasis/drug effects , Hypercalciuria/physiopathology , Hyponatremia/physiopathology , Kidney Tubules, Distal/drug effects , Magnesium/metabolism , Male , Models, Animal , Nephrocalcinosis/physiopathology , Rats , Rats, Wistar , Renal Tubular Transport, Inborn Errors/physiopathology , Renin-Angiotensin System/physiology
18.
Clin Chem Lab Med ; 50(4): 655-61, 2011 Dec 20.
Article in English | MEDLINE | ID: mdl-22505529

ABSTRACT

BACKGROUND: The establishment of the causal relationship between high-risk human papillomavirus (HR-HPV) infection and cervical cancer and its precursors has resulted in the development of HPV DNA detection systems. Currently, real-time PCR assays for the detection of HPV, such as the RealTime High Risk (HR) HPV assay (Abbott) and the cobas® 4800 HPV Test (Roche Molecular Diagnostics) are commercially available. However, none of them enables the detection and typing of all HR-HPV types in a clinical high-throughput setting. This paper describes the laboratory workflow and the validation of a type-specific real-time quantitative PCR (qPCR) assay for high-throughput HPV detection, genotyping and quantification. This assay is routinely applied in a liquid-based cytology screening setting (700 samples in 24 h) and was used in many epidemiological and clinical studies. METHODS: The TaqMan-based qPCR assay enables the detection of 17 HPV genotypes and ß-globin in seven multiplex reactions. These HPV types include all 12 high-risk types (HPV16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59), three probably high-risk types (HPV53, 66 and 68), one low-risk type (HPV6) and one undetermined risk type (HPV67). RESULTS: An analytical sensitivity of ≤100 copies was obtained for all the HPV types. The analytical specificity of each primer pair was 100% and an intra- and inter-run variability of <6.4% was observed. CONCLUSIONS: The type-specific real-time PCR approach enables detection of 17 HPV types, identification of the HPV type and determination of the viral load in a single sensitive assay suitable for high-throughput screening.


Subject(s)
Genotyping Techniques/methods , Papillomaviridae/genetics , Papillomaviridae/isolation & purification , Real-Time Polymerase Chain Reaction/methods , DNA, Viral/analysis , DNA, Viral/genetics , Female , Humans , Papillomaviridae/physiology , Viral Load
19.
Int J Biol Markers ; 25(3): 117-25, 2010.
Article in English | MEDLINE | ID: mdl-20872354

ABSTRACT

A cervical cytology biobank (CCB) is an extension of current cytopathology laboratory practice consisting in the systematic storage of Pap smears or liquid-based cytology samples from women participating in cervical cancer screening with the explicit purpose to facilitate future scientific research and quality audit of preventive services. A CCB should use an internationally agreed uniform cytology terminology, be integrated in a national or regional screening registry, and be linked to other registries (histology, cancer, vaccination). Legal and ethical principles concerning personal integrity and data safety must be respected strictly. Biobank-based studies require approval of ethical review boards. A CCB is an almost inexhaustible resource for fundamental and applied biological research. In particular, it can contribute to answering questions on the natural history of HPV infection and HPV-induced lesions and cancers, screening effectiveness, exploration of new biomarkers, and surveillance of the short- and long-term effects of the introduction of HPV vaccination. To understand the limitations of CCB, more studies are needed on the quality of samples in relation to sample type, storage procedures, and duration of storage.


Subject(s)
Biological Specimen Banks , Cervix Uteri/cytology , Papanicolaou Test , Vaginal Smears , Alphapapillomavirus/isolation & purification , Alphapapillomavirus/pathogenicity , Biological Specimen Banks/ethics , Biological Specimen Banks/legislation & jurisprudence , Biological Specimen Banks/organization & administration , Biological Specimen Banks/standards , DNA/isolation & purification , Europe/epidemiology , Female , Guidelines as Topic , Humans , Medical Record Linkage , Molecular Diagnostic Techniques/methods , Molecular Diagnostic Techniques/standards , Papillomavirus Infections/epidemiology , Papillomavirus Infections/pathology , Papillomavirus Infections/prevention & control , Papillomavirus Vaccines , RNA/isolation & purification , Registries , Specimen Handling/standards , Terminology as Topic , Uterine Cervical Neoplasms/epidemiology , Uterine Cervical Neoplasms/pathology , Uterine Cervical Neoplasms/prevention & control , Uterine Cervical Neoplasms/virology , Uterine Cervicitis/pathology , Uterine Cervicitis/virology
20.
J Clin Microbiol ; 48(7): 2524-9, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20463156

ABSTRACT

Human papillomavirus (HPV) E6/E7 mRNA has been proposed as a more specific marker for cervical dysplasia and cancer than HPV DNA. This study evaluated the RNA specificity of nucleic acid sequence-based amplification (NASBA)-based HPV detection using HPV DNA plasmids (HPV type 16 [HPV16], HPV18, HPV31, HPV33, and HPV45) and nucleic acid extracts of several cell lines, which were systematically subjected to enzymatic treatments with DNase and RNase. HPV plasmid dilutions (10(6) to 10(0) copies/microl) and nucleic acid extracts (total DNA, RNA-free DNA, total RNA, and DNA-free RNA) of unfixed and fixed (PreServCyt and SurePath) HaCaT, HeLa, and CaSki cells were tested with the NucliSENS EasyQ HPV test. The RNA-free DNA extracts of HeLa and CaSki cells could be amplified by HPV18 and -16 NASBA, respectively. Fixation of the cells did not influence NASBA. All HPV plasmids could be detected with NASBA. Based on the plasmid dilution series, a lower detection limit of 5 x 10(3) HPV DNA copies could be determined. Our study identified viral double-stranded DNA as a possible target for NASBA-based HPV detection. The differences in diagnostic accuracy between the NASBA-based tests and conventional HPV DNA detection assays seem to be attributable not to the more specific amplification of viral mRNA but to the limited type range and the lower analytical sensitivity for HPV DNA.


Subject(s)
Alphapapillomavirus , Nucleic Acid Amplification Techniques/methods , RNA, Viral/isolation & purification , Virology/methods , Alphapapillomavirus/classification , Alphapapillomavirus/genetics , Cell Line, Tumor , DNA, Viral/analysis , DNA, Viral/isolation & purification , HeLa Cells , Humans , Papillomavirus Infections/virology , Plasmids/genetics , RNA, Viral/analysis , Reproducibility of Results
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