Peach palm shells (Bactris gasipaes Kunth) bioconversion by Lentinula edodes: Potential as new bioproducts for beef cattle feeding.

This paper aims to develop and assess the in vitro effects on ruminal fermentation and greenhouse gas parameters of new bioproducts for beef cattle diets, carried out by solid-state fermentation of peach palm shells colonized by Lentinula edodes (SSF) and after Shiitake mushroom cultivation in axenic blocks (SMS). In vitro experiments were performed to assess the in vitro gas production, digestibility, and fiber degradation of formulated total diets. Bioproducts presented high ß-glucans (9.44---11.27 %) and protein (10.04---8.35 %) contents, as well as similar digestibility to conventional diets. SMS diet had the lowest methane and carbon dioxide (19.1 and 84.1 mM/g OM) production, and the SSF diet presented lower carbon dioxide production (98.9 mM/g OM) than other diets, whereas methane was similar. This study highlighted a sustainable use of byproducts for beef cattle diets, promising for digestibility, nutritional value, ß-glucans incorporation, and environmental impact mitigation, favoring the circular bioeconomy.

Phenotypic association among performance, feed efficiency and methane emission traits in Nellore cattle.

Enteric methane (CH4) emissions are a natural process in ruminants and can result in up to 12% of energy losses. Hence, decreasing enteric CH4 production constitutes an important step towards improving the feed efficiency of Brazilian cattle herds. The aim of this study was to evaluate the relationship between performance, residual feed intake (RFI), and enteric CH4 emission in growing Nellore cattle (Bos indicus). Performance, RFI and CH4 emission data were obtained from 489 animals participating in selection programs (mid-test age and body weight: 414±159 days and 356±135 kg, respectively) that were evaluated in 12 performance tests carried out in individual pens (n = 95) or collective paddocks (n = 394) equipped with electronic feed bunks. The sulfur hexafluoride tracer gas technique was used to measure daily CH4 emissions. The following variables were estimated: CH4 emission rate (g/day), residual methane emission and emission expressed per mid-test body weight, metabolic body weight, dry matter intake (CH4/DMI), average daily gain, and ingested gross energy (CH4/GE). Animals classified as negative RFI (RFI<0), i.e., more efficient animals, consumed less dry matter (P <0.0001) and emitted less g CH4/day (P = 0.0022) than positive RFI animals (RFI>0). Nonetheless, more efficient animals emitted more CH4/DMI and CH4/GE (P < 0.0001), suggesting that the difference in daily intake between animals is a determinant factor for the difference in daily enteric CH4 emissions. In addition, animals classified as negative RFI emitted less CH4 per kg mid-test weight and metabolic weight (P = 0.0096 and P = 0.0033, respectively), i.e., most efficient animals could emit less CH4 per kg of carcass. In conclusion, more efficient animals produced less methane when expressed as g/day and per kg mid-test weight than less efficient animals, suggesting lower emissions per kg of carcass produced. However, it is not possible to state that feed efficiency has a direct effect on enteric CH4 emissions since emissions per kg of consumed dry matter and the percentage of gross energy lost as CH4 are higher for more efficient animals.

Animals selected for postweaning weight gain rate have similar maintenance energy requirements regardless of their residual feed intake classification.

Data of comparative slaughter were used to determine Nellore bulls' net energy requirements classified as efficient or inefficient according to residual feed intake (RFI) and selection lines (SL). Sixty-seven Nellore bulls from the selected (SE) and control (CO) lines of the selection program for postweaning weight gain were used. The animals underwent digestibility trials before being submitted to the finishing trial. Sixteen bulls were slaughtered at the beginning of the finishing trial, and their body composition was used as the baseline for the remaining animals. For body composition determinations, whole empty body components were weighed, ground, and subsampled for chemical analyses. Initial body composition was determined with equations developed from the baseline group using shrunk body weight, fat, and protein. The low RFI (LRFI) and CO animals had a lower dry matter (DMI) and nutrient intake (P < 0.05) than high RFI (HRFI) and SE animals, without alterations in digestibility coefficients (P > 0.05). During the finishing trial, DMI remained lower for LRFI and CO animals. Growth performance was similar between RFI classes, except for empty body weight gain that tended to be higher for LRFI than HRFI (P = 0.091). The SE animals had less fat content on the empty body (P = 0.005) than CO. Carcasses tended to be leaner for LRFI than HRFI (P = 0.080) and for SE than CO (P = 0.066) animals. LRFI animals retained more energy (P = 0.049) and had lower heat production (HP; P = 0.033) than the HRFI ones. Retained energy was not influenced by SL (P = 0.165), but HP tended to be higher for SE when compared to CO (P = 0.075) animals. Net energy requirement for maintenance (NEm) was lower for LRFI than HRFI (P = 0.009), and higher for SE than CO (P = 0.046) animals. There was an interaction tendency between RFI and SL (P = 0.063), suggesting that NEm was lower for LRFI+CO than HRFI+CO (P = 0.006), with no differences for SE (P = 0.527) animals. The efficiency of ME utilization for maintenance (km) of LRFI and HRFI animals were 62.6% and 58.4%, respectively, and for SE and CO were 59.0% and 62.1%, respectively. The breeding program for postweaning weight has not improved feed efficiency over the years, with RFI classification not being a promising selection tool for SE animals. Classification based on RFI seems to be useful in animals that have not undergone the breeding program, with LRFI animals having lower energy requirements than the HRFI ones.

Association between residual feed intake, digestion, ingestive behavior, enteric methane emission and nitrogen metabolism in Nellore beef cattle.

This study aimed to evaluate nutrient intake and digestibility, enteric methane emission and nitrogen utilization efficiency in Nellore cattle ranked by residual feed intake (RFI). Twenty-four Nellore bulls at 466 ± 24 days of age and with 352 ± 14.6 kg of body weight, classified as low and high RFI, were evaluated. Animals were kept in individual pens for three periods of 28 days and variables were measured. Data were analyzed as repeated measures over time, considering as fixed effects RFI class, period and RFI class x period interaction, and linear (co)variate of age. No significant differences in dry matter or nutrient intake were detected between RFI classes, but total digestible nutrients intake tended to be lower in low RFI animals, and apparent nutrient digestibility was higher in high RFI animals. Partial efficiency of growth tended to be lower in high RFI animals. RFI class did not interfere with enteric methane production or microbial protein synthesis, but fecal nitrogen output was higher in low RFI animals. The greater efficiency of low RFI animals is consequence of lower maintenance requirements, since energy from higher nutrients digestibility in high RFI animals was spent on metabolic processes other than body tissue deposition.

Genetic association among feeding behavior, feed efficiency, and growth traits in growing indicine cattle.

This study aimed to estimate genetic parameters, including genomic data, for feeding behavior, feed efficiency, and growth traits in Nellore cattle. The following feeding behavior traits were studied (861 animals with records): time spent at the feed bunk (TF), duration of one feeding event (FD), frequency of visits to the bunk (FF), feeding rate (FR), and dry matter intake (DMI) per visit (DMIv). The feed efficiency traits (1,543 animals with records) included residual feed intake (RFI), residual weight gain (RWG), and feed conversion (FC). The growth traits studied were average daily gain (ADG, n = 1,543 animals) and selection (postweaning) weight (WSel, n = 9,549 animals). The (co)variance components were estimated by the maximum restricted likelihood method, fitting animal models that did (single-step genomic best linear unbiased prediction) or did not include (best linear unbiased prediction) genomic information in two-trait analyses. The direct responses to selection were calculated for the feed efficiency traits, ADG, and WSel, as well as the correlated responses in feed efficiency and growth by direct selection for shorter TF. The estimated heritabilities were 0.51 ± 0.06, 0.35 ± 0.06, 0.27 ± 0.07, 0.34 ± 0.06, and 0.33 ± 0.06 for TF, FD, FF, FR, and DMIv, respectively. In general, TF and FD showed positive genetic correlations with all feed efficiency traits (RFI, RWG, and FC), ADG, DMI, and WSel. Additionally, TF showed high and positive genetic and phenotypic correlations with RFI (0.71 ± 0.10 and 0.46 ± 0.02, respectively) and DMI (0.56 ± 0.09 and 0.48 ± 0.03), and medium to weak genetic correlations with growth (0.32 ± 0.11 with ADG and 0.14 ± 0.09 with WSel). The results suggest that TF is a strong indicator trait of feed efficiency, which exhibits high heritability and a weak positive genetic correlation with growth. In a context of a selection index, the inclusion of TF to select animals for shorter TF may accelerate the genetic gain in feed efficiency by reducing RFI but with zero or slightly negative genetic gain in growth traits.

The phenotypic relationship between residual intake and gain and other feed efficiency traits in Nellore cattle.

This study aimed to compare feed efficiency measures of Nellore beef cattle on different residual intake and gain (RIG) classes. We used data from 610 animals weighing on average 236.33 kg and average of 283 days of age from feedlot performance tests carried out between 2005 and 2012. Animals were grouped based on RIG into three different classes: high RIG (> mean + 0.5 standard deviation (SD), most efficient; n = 193), medium RIG (mean ± 0.5 SD; n = 235), and low RIG (< mean - 0.5 SD, least efficient; n = 182). Residual feed intake (RFI), residual gain (RG), feed conversion ratio (FCR), feed efficiency (FE), relative growth rate (RGR), and Kleiber ratio (KR) of animals in each RIG class were compared by Tukey test at 1% of probability. Phenotypic correlations between variables were evaluated as well. Animals on high RIG class showed lower dry matter intake (P < 0.01) and higher average daily gain (P < 0.01) than low RIG animals. Consequently, high RIG animals had lower FCR (P < 0.01) and higher FE (P < 0.01) than those animals in low RIG class. The most efficient animals based on RIG were also the most efficient animals based on RG and RFI. RIG was negatively correlated to dry matter intake (P < 0.01) and FCR (P < 0.01), and a positive correlation was found between RIG and FE (P < 0.01). Therefore, RIG appears to be a good parameter to select animals with reduced dry matter intake and high productive performance.

Correction: Genomic Regions Associated with Feed Efficiency Indicator Traits in an Experimental Nellore Cattle Population.

[This corrects the article DOI: 10.1371/journal.pone.0164390.].

Digestion and metabolism of low and high residual feed intake Nellore bulls.

Understanding the reasons why animals of similar performances have different feed requirements is important to increase profits for cattle producers and to decrease the environmental footprint of beef cattle production. This study was carried out aiming to identify the associations between residual feed intake (RFI) and animal performance, nutrient digestibility, and blood metabolites related to energy balance of young Nellore bulls during the finishing period. Animals previously classified as low (n = 13) and high RFI (n = 12), with average initial body weight of 398 kg and age of 503 days were used. Cattle were fed a high energy diet and were slaughtered when rib fat thickness measured by ultrasound between the 12th and 13th ribs reached the minimum of 4 mm. A completely randomized design was adopted, being data analyzed with a mixed model that included the random effect of slaughter group, the fixed effect of RFI class, and linear effect of the covariate feedlot time. No differences were found (p > 0.10) between RFI classes for performance, dry matter, and nutrients intake. However, dry (p = 0.0911) and organic matter (p = 0.0876) digestibility tended to be lower, and digestibility of neutral detergent fiber corrected for ash and protein (p = 0.0017), and total digestible nutrients (p = 0.0657) were lower for high RFI animals, indicating lesser capacity of food utilization. Difference between low and high RFI animals was also found for blood cortisol at the end of the trial (p = 0.0044), having low RFI animals lower cortisol concentrations. Differences in the ability to digest food can affect the efficiency of transforming feed into meat by Nellore cattle.

Genomic Regions Associated with Feed Efficiency Indicator Traits in an Experimental Nellore Cattle Population.

The objective of this study was to identify genomic regions and metabolic pathways associated with dry matter intake, average daily gain, feed efficiency and residual feed intake in an experimental Nellore cattle population. The high-density SNP chip (Illumina High-Density Bovine BeadChip, 777k) was used to genotype the animals. The SNP markers effects and their variances were estimated using the single-step genome wide association method. The (co)variance components were estimated by Bayesian inference. The chromosome segments that are responsible for more than 1.0% of additive genetic variance were selected to explore and determine possible quantitative trait loci. The bovine genome Map Viewer was used to identify genes. In total, 51 genomic regions were identified for all analyzed traits. The heritability estimated for feed efficiency was low magnitude (0.13±0.06). For average daily gain, dry matter intake and residual feed intake, heritability was moderate to high (0.43±0.05; 0.47±0.05, 0.18±0.05, respectively). A total of 8, 17, 14 and 12 windows that are responsible for more than 1% of the additive genetic variance for dry matter intake, average daily gain, feed efficiency and residual feed intake, respectively, were identified. Candidate genes GOLIM4, RFX6, CACNG7, CACNG6, CAPN8, CAPN2, AKT2, GPRC6A, and GPR45 were associated with feed efficiency traits. It was expected that the response to selection would be higher for residual feed intake than for feed efficiency. Genomic regions harboring possible QTL for feed efficiency indicator traits were identified. Candidate genes identified are involved in energy use, metabolism protein, ion transport, transmembrane transport, the olfactory system, the immune system, secretion and cellular activity. The identification of these regions and their respective candidate genes should contribute to the formation of a genetic basis in Nellore cattle for feed efficiency indicator traits, and these results would support the selection for these traits.

Feed efficiency, blood parameters, and ingestive behavior of young Nellore males and females.

This study aimed to evaluate differences in efficiency of feed utilization between young Nellore males and females by comparing growth traits, feed intake, blood parameters, and ingestive behavior of the animals. Data from 768 Nellore males and females that participated in eight performance tests for individual feed intake evaluation were used. Performance and feed efficiency measures, efficiency-related hematological, metabolic and hormonal variables, and data regarding ingestive behavior were collected. Feed efficiency measures were defined by the relationship between performance and feed intake. Data were analyzed using mixed models that included the fixed effects of sex, herd, and the covariate age within sex and the random effects of facility within year, year, and residual. Significant differences between males and females were observed for traits related to weight gain and feed intake. Although individual dynamics of feed efficiency measures differed between males and females, no significant differences in residual feed intake, feed efficiency, or relative growth rate were observed between sexes. Significant differences between sexes were found for platelets, red blood cells, hemoglobin, creatinine, glucose, urea, triglycerides, insulin, cortisol, and IGF-I. Females spent more time feeding and less time ruminating when compared to males. However, males exhibited higher feeding efficiency and lower rumination efficiency than females. Growing Nellore males and females are efficient in feed utilization, and the differences in blood variables observed are probably due to differences in body size and feed intake. Males spend less time eating, consume more food, and spend more time ruminating than females.

Methane emission by Nellore cattle subjected to different nutritional plans.

The objective was to evaluate the emission of enteric methane by Nellore cattle subjected to different nutritional plans, as well as the intake and digestibility of nutrients from the diets supplied. Forty-seven animals in a confinement system (feedlot) were fed a corn silage-based diet for 35 days. Afterwards, these animals were evaluated in a grazing system during the rainy periods, in Urochloa brizantha cv Marandu paddocks, for 44 days. Chromic oxide was used as external marker to estimate the fecal production of animals. Samples of feces, ingredients, and pasture were collected and sampled for subsequent chemical analyses. The SF6 tracer gas technique was adopted to quantify the methane gas emitted by the animals. The experimental design was completely randomized, using procedure GLM of software SAS (9.2), including the fixed effects of sex and nutritional plan and the linear effect of the co-variable weights. Means were analyzed by Tukey's test at 5 % probability. The intakes of total dry matter and organic matter were greater for the animals subjected to the feedlot diet (P < 0.05). In this treatment, the animals showed greater dry matter digestibility, whereas the organic matter digestibility was lower (P < 0.05). The digestibility of the dry matter was higher in confinement, whereas the digestibility of the organic matter was lower in this treatment (P < 0.05). Emission of CH4/day (104.01 g) by the animals fed the feedlot diet (P < 0.05) was greater, but the loss of consumed energy for methane production (CH4/CEB) and methane emission per dry matter consumed were lower in relation to the grazing treatment (3.75 vs 4.23 % and 11.67 vs 15.71 g/kg). The better quality of the diet in the feedlot promoted lower energy losses as methane.